张伟鹏｜中国海洋大学｜学者主页

2026

A N-methylated antimicrobial peptide targets the fructose transporter FruA of Staphylococcus aureus

Qi Liu, Yaxuan Li, Zhichen Jiang, Shen Fan, Wei Ding, Weipeng Zhang

The Journal of Antibiotics

DOI

2026

Siderophore sharing protects clonal Pseudomonas aeruginosa biofilms from colistin

S Q Wang, Wei Ding, Hongzhe Peng, Lihui Ren, Bo Dong, Jinshui Lin, Weipeng Zhang

Applied and Environmental Microbiology

DOI

2026

A synthetic community derived from marine microplastic biofilms for efficient nitrate removal

Meng Sun, Weipeng Zhang, Wei Ding

Bioresource Technology Reports

DOI

2026

Intricate chemosymbiosis in a widespread shallow-water thyasirid clam

Menggong Li, Yunlong Li, Shi‐Hai Mao, Zhixin Zhang, Chong Chen, Xueying Nie, Xu Liu, Hui Wang, Xiaoshou Liu, Weipeng Zhang, Qiang Lin, Guangchao Zhuang, Jin Sun

Science Advances

DOI

2026

Genomic and chemical analyses of 713 marine biofilm-derived bacterial strains

Jie Lu, Shen Fan, Jiaoxia Shi, Xiaoli Hu, Wei Ding, Jiejie Hao, Weipeng Zhang

Applied and Environmental Microbiology

DOI

2026

Unlocking the unexplored AMPSphere in marine rare species

Shen Fan, Jie Lu, Han Cui, Wei Ding, Shunbo Li, Jin Sun, Yong‐Xin Li, Weipeng Zhang

Microbiome

DOI

2026

Regulation of DMSP organosulfur cycling in ubiquitous Roseobacter marine bacteria

Hui-Hui Fu, Ming-Chen Wang, Zhi-Qing Wang, Yu-Han Sang, Zhen-Kun Li, Feifei Li, Jia-Rong Liu, Qi‐Long Qin, Xiao-Yu Zhu, Na Wang, Jin-Jian Wan, Zhao‐Jie Teng, Weipeng Zhang, Andrew James Gates, Chun-Yang Li, Jonathan D. Todd, Yu-Zhong Zhang

The EMBO Journal

DOI

2026

An endogenous synthetic bacterial community mitigates nitrite toxicity in shrimps

yongming wang, Yi Shu, Weipeng Zhang, Zhenmin Bao, Wei Ding

Ecotoxicology and Environmental Safety

DOI

2025

Identifying a key Vibrio group that causes mass mortality in Zhikong scallops

Zhongcheng Wei, Yi Shu, Yongming Wang, Lirong Chang, Longfei Lu, Weipeng Zhang, Zhenmin Bao, Wei Ding, Xiaoli Hu

Aquaculture

DOI

2025

High-level polymyxin B resistance and underlying mechanism in a multidrug-resistant Acinetobacter strain isolated from the marine plastisphere

Peng Qin, Wei Ding, Weipeng Zhang

The Journal of Antibiotics

DOI

2025

Branched-chain amino acid metabolism supports Roseobacteraceae positive interactions in marine biofilms

Han Cui, Shuaitao Wang, Shen Fan, Hongan Long, Jinshui Lin, Wei Ding, Weipeng Zhang

Applied and Environmental Microbiology

DOI

2024

Genomic Features and Antimicrobial Activity of Phaeobacter inhibens Strains from Marine Biofilms

Han Cui, Jie Lu, Wei Ding, Weipeng Zhang

Marine Drugs

DOI

2024

Genomic Analysis of Novel Sulfitobacter Bacterial Strains Isolated from Marine Biofilms

Han Cui, Shen Fan, Wei Ding, Weipeng Zhang

Marine Drugs

DOI

2024

Synthetic biofilm community for efficient phosphorus removal from high-salinity wastewater

Heng Zhang, Jie Zhang, Shen Fan, Jie Lu, Weipeng Zhang, Wei Ding

Bioresource Technology

DOI

2024

Bioprospecting of culturable marine biofilm bacteria for novel antimicrobial peptides

Shen Fan, Peng Qin, Jie Lu, Shuaitao Wang, Jie Zhang, Yan Wang, Aifang Cheng, Yan Cao, Wei Ding, Weipeng Zhang

iMeta

DOI

2024

Acute nitrite exposure causes gut microbiota dysbacteriosis and proliferation of pathogenic Photobacterium in shrimp

Yongming Wang, Yi Shu, Yue Sun, Qifan Zeng, Weipeng Zhang, Zhenmin Bao, Wei Ding

Ecotoxicology and Environmental Safety

DOI

2024

Acute Ammonia Causes Pathogenic Dysbiosis of Shrimp Gut Biofilms

Ning Gao, Yi Shu, Yongming Wang, Meng Sun, Zhongcheng Wei, Chenxi Song, Weipeng Zhang, Yue Sun, Xiaoli Hu, Zhenmin Bao, Wei Ding

International Journal of Molecular Sciences

DOI

2023

Genomic and transcriptomic insights into complex virus-prokaryote interactions in marine biofilms

Kun Zhou, Tin Yan Wong, Lexin Long, Karthik Anantharaman, Weipeng Zhang, Wai Chuen Wong, Rui Zhang, Pei-Yuan Qian

Isme Journal，Vol. 170, No. 120

DOI

2023

Microbial resource mining from ancient biofilms

Jie Lu, Shen Fan, Wei Ding, R. Tian, Weipeng Zhang

The Innovation Geoscience

DOI

2023

Biofilm formation stabilizes metabolism in a Roseobacteraceae bacterium under temperature increase

Meng Wang, Jie Lu, Peng Qin, Shuaitao Wang, Wei Ding, Hui‐Hui Fu, Yu‐Zhong Zhang, Weipeng Zhang

Applied and Environmental Microbiology

DOI

2023

Gene co‐option, duplication and divergence of cement proteins underpin the evolution of bioadhesives across barnacle life histories

Yue Him Wong, Niklas Dreyer, Hao-Cheng Liu, Yi Lan, Jamie J. Chen, Jin Sun, Weipeng Zhang, Pei‐Yuan Qian, Benny K. K. Chan

Molecular Ecology

DOI

2023

Early stage of biofilm assembly on microplastics is structured by substrate size and bacterial motility

Peng Qin, Han Cui, Panxin Li, Shuaitao Wang, Shen Fan, Jie Lu, Meng Sun, Heng Zhang, Shougang Wang, Xiaoyan Su, Hui‐Hui Fu, Xiaoli Hu, Jinshui Lin, Yu‐Zhong Zhang, Wei Ding, Weipeng Zhang

iMeta

DOI

2023

Copiotrophy in a Marine-Biofilm-Derived Roseobacteraceae Bacterium Can Be Supported by Amino Acid Metabolism and Thiosulfate Oxidation

Xiaoyan Su, Han Cui, Weipeng Zhang

International Journal of Molecular Sciences

DOI

2023

Meta-organism gene expression reveals that the impact of nitrate enrichment on coral larvae is mediated by their associated Symbiodiniaceae and prokaryotic assemblages

Haoya Tong, Fang Zhang, Jin Sun, Shelby E. McIlroy, Weipeng Zhang, Yan Wang, Hui Huang, Guo‐Wei Zhou, Pei‐Yuan Qian

Microbiome

DOI

2023

Anaerobic thiosulfate oxidation by the Roseobacter group is prevalent in marine biofilms

Wei Ding, Shougang Wang, Peng Qin, Shen Fan, Xiaoyan Su, Peiyan Cai, Jie Lu, Han Cui, Meng Wang, Yi Shu, Yongming Wang, Hui‐Hui Fu, Yu‐Zhong Zhang, Yong‐Xin Li, Weipeng Zhang

Nature Communications

DOI

2023

The Landscape of Global Ocean Microbiome: From Bacterioplankton to Biofilms

Jie Lu, Yi Shu, Heng Zhang, Shangxian Zhang, Chengrui Zhu, Wei Ding, Weipeng Zhang

International Journal of Molecular Sciences

DOI

2022

Profiling Signal Transduction in Global Marine Biofilms

Ruojun Wang, Weipeng Zhang, Wei Ding, Zhi-Cong Liang, Lexin Long, Wai-Chuen Wong, P. Qian

Frontiers in Microbiology

DOI

2022

Microbial Richness of Marine Biofilms Revealed by Sequencing Full-Length 16S rRNA Genes

Shou-Gang Wang, Xiao-Yan Su, Han Cui, Meng Wang, Xiao-Li Hu, Wei Ding, Weipeng Zhang

Genes

DOI

2022

TCA cycle enhancement and uptake of monomeric substrates support growth of marine Roseobacter at low temperature

Meng Wang, Huan Wang, Peng Wang, Hui‐Hui Fu, Chunyang Li, Qi‐Long Qin, Yantao Liang, Min Wang, Xiu‐Lan Chen, Yu‐Zhong Zhang, Weipeng Zhang

Communications Biology

DOI

2022

Genomic analysis of Thalassospira sp. SW-3-3 reveals its genetic potential for phthalate pollution remediation

Shanshan Wu, Wenjing Zhu, Chen Wang, Chuan-Lei Suo, Weipeng Zhang, Chunyang Li, Hui‐Hui Fu, Yi Zhang, Mei‐Ling Sun, Peng Wang

Marine Genomics

DOI

2022

Halomonas profundi sp. nov., isolated from deep-sea sediment of the Mariana Trench

Fan Wang, Jin-Jian Wan, Xi‐Ying Zhang, Yu Xin, Mei‐Ling Sun, Peng Wang, Weipeng Zhang, Jiwei Tian, Yu‐Zhong Zhang, Chunyang Li, Hui‐Hui Fu

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2021

Expanding our understanding of marine viral diversity through metagenomic analyses of biofilms

Wei Ding, Ruojun Wang, Zhi-Mei Liang, Rui Zhang, P. Qian, Weipeng Zhang

Marine Life Science & Technology

DOI

2021

Scientific and technological progress in the microbial exploration of the hadal zone

Shen Fan, Meng Wang, Wei Ding, Yong-Xin Li, Yu-Zhong Zhang, Weipeng Zhang

Marine Life Science & Technology

DOI

2021

Hologenome analysis reveals dual symbiosis in the deep-sea hydrothermal vent snail Gigantopelta aegis

Yi Lan, Jin Sun, Chong Chen, Ya-Nan Sun, Yadong Zhou, Yi Yang, Weipeng Zhang, Runsheng Li, Kun Zhou, Wai-Chuen Wong, Yick Hang Kwan, Aifang Cheng, S. Bougouffa, C. V. Van Dover, Jian-Wen Qiu, P. Qian

Nature Communications

DOI

2021

Culture Enrichment Combined With Long-Read Sequencing Facilitates Genomic Understanding of Hadal Sediment Microbes

Huan Wang, Meng Wang, Shen-Hou Fan, Jie Lu, Yi Lan, Menggong Li, Jiangyan Li, Ru-Long Liu, Jin Sun, Jia-Song Fang, P. Qian, Yu-Zhong Zhang, Weipeng Zhang

Frontiers in Marine Science

DOI

2021

Structural and Mechanistic Insights Into Dimethylsulfoxide Formation Through Dimethylsulfide Oxidation

Xiujuan Wang, Nan Zhang, Zhao‐Jie Teng, Peng Wang, Weipeng Zhang, Xiu‐Lan Chen, Yu‐Zhong Zhang, Yin Chen, Hui‐Hui Fu, Chunyang Li

Frontiers in Microbiology

DOI

2021

Correction to: Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate cycling in polar oceans

Zhao‐Jie Teng, Qi‐Long Qin, Weipeng Zhang, Jian Li, Hui‐Hui Fu, Peng Wang, Musheng Lan, Guangfu Luo, Jianfeng He, Andrew McMinn, Min Wang, Xiu‐Lan Chen, Yu‐Zhong Zhang, Yin Chen, Chunyang Li

Microbiome

DOI

2021

Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate cycling in polar oceans

Zhao‐Jie Teng, Qi‐Long Qin, Weipeng Zhang, Jian Li, Hui‐Hui Fu, Peng Wang, Musheng Lan, Guangfu Luo, Jianfeng He, Andrew McMinn, Min Wang, Xiu‐Lan Chen, Yu‐Zhong Zhang, Yin Chen, Chunyang Li

Microbiome

DOI

2021

A novel ATP dependent dimethylsulfoniopropionate lyase in bacteria that releases dimethyl sulfide and acryloyl-CoA

Chunyang Li, Xiujuan Wang, Xiu‐Lan Chen, Qi Sheng, Shan Zhang, Peng Wang, Mussa Quareshy, Branko Rihtman, Xuan Shao, Chao Gao, Fuchuan Li, Shengying Li, Weipeng Zhang, Xiao‐Hua Zhang, Gui‐Peng Yang, Jonathan D. Todd, Yin Chen, Yu‐Zhong Zhang

eLife

DOI

2021

Grincamycins P–T: Rearranged Angucyclines from the Marine Sediment-Derived Streptomyces sp. CNZ-748 Inhibit Cell Lines of the Rare Cancer Pseudomyxoma Peritonei

Zhuo Shang, Zachary E. Ferris, Douglas Sweeney, Alexander B. Chase, Chunhua Yuan, Yvonne Y. Hui, Lukuan Hou, Ethan A. Older, Dan Xue, Xiaoyu Tang, Weipeng Zhang, Prakash S. Nagarkatti, Mitzi Nagarkatti, Traci L. Testerman, Paul R. Jensen, Jie Li

Journal of Natural Products

DOI

2021

Oxidation of trimethylamine to trimethylamine N -oxide facilitates high hydrostatic pressure tolerance in a generalist bacterial lineage

Qi‐Long Qin, Zhibin Wang, Hai‐Nan Su, Xiu‐Lan Chen, Jie Miao, Xiujuan Wang, Chunyang Li, Xi‐Ying Zhang, Ping‐Yi Li, Min Wang, Jiasong Fang, Ian D. E. A. Lidbury, Weipeng Zhang, Xiao‐Hua Zhang, Gui‐Peng Yang, Yin Chen, Yu‐Zhong Zhang

Science Advances

DOI

2021

Author response: A novel ATP dependent dimethylsulfoniopropionate lyase in bacteria that releases dimethyl sulfide and acryloyl-CoA

DOI

2021

Evolutionary Trajectory of the Replication Mode of Bacterial Replicons

Bin-Bin Xie, Jin‐Cheng Rong, Bai-Lu Tang, Sishuo Wang, Guiming Liu, Qi‐Long Qin, Xi‐Ying Zhang, Weipeng Zhang, Qunxin She, Yin Chen, Fuchuan Li, Shengying Li, Xiu‐Lan Chen, Haiwei Luo, Yu‐Zhong Zhang

mBio

DOI

2020

Exploring the Influence of Signal Molecules on Marine Biofilms Development

Ruojun Wang, Wei Ding, Lexin Long, Yi Lan, Haoya Tong, S. Saha, Y. Wong, Jin Sun, Yong-Xin Li, Weipeng Zhang, P. Qian

Frontiers in Microbiology

DOI

2020

Correction to: Structure and function of the Arctic and Antarctic marine microbiota as revealed by metagenomics

Shunan Cao, Weipeng Zhang, Wei Ding, Meng Wang, Shen Fan, Bo Yang, A. McMinn, Min Wang, Bin-Bin Xie, Qi-Long Qin, Xiu-Lan Chen, Jianfeng He, Yu-Zhong Zhang

Microbiome

DOI

2020

Structure and function of the Arctic and Antarctic marine microbiota as revealed by metagenomics

Shunan Cao, Weipeng Zhang, Wei Ding, Meng Wang, Shen Fan, Bo Kyung Yang, Andrew McMinn, Min Wang, Bin-Bin Xie, Qi‐Long Qin, Xiu‐Lan Chen, Jianfeng He, Yu‐Zhong Zhang

Microbiome

DOI

2020

The Scaly-foot Snail genome and implications for the origins of biomineralised armour

Jin Sun, Chong Chen, Norio Miyamoto, Run-Sheng Li, J. Sigwart, Ting Xu, Ya-Nan Sun, Wai-Chuen Wong, J. C. Ip, Weipeng Zhang, Yi Lan, D. Bissessur, Tomo-o Watsuji, H. Watanabe, Y. Takaki, K. Ikeo, N. Fujii, K. Yoshitake, Jian-Wen Qiu, K. Takai, P. Qian

Nature Communications

DOI

2020

Nutrient gradients simulate different adjustments of coral-algal symbiosis

Haoya Tong, Guowei Zhou, Fang Zhang, J. Sun, Weipeng Zhang, Hui Huang, P. Qian

DOI

2020

Experimental evidence for long‐term coexistence of copiotrophic and oligotrophic bacteria in pelagic surface seawater

Yi Li, Zhibin Wang, Xi‐Ying Zhang, Yan‐Ru Dang, Lin‐Lin Sun, Weipeng Zhang, Hui‐Hui Fu, Gui‐Peng Yang, Min Wang, Andrew McMinn, Xiu‐Lan Chen, Yin Chen, Shi Wang, Yu‐Zhong Zhang, Qi‐Long Qin

Environmental Microbiology

DOI

2019

Metagenomic Analysis of Zinc Surface-Associated Marine Biofilms

Wei Ding, Weipeng Zhang, Nabeel Mannalamkunnath Alikunhi, Zenon Batang, Bite Pei, Ruojun Wang, Lianguo Chen, Abdulaziz Al-Suwailem, Pei-Yuan Qian

Microbial Ecology，Vol. 770, No. 20

DOI

2019

Marine biofilms constitute a bank of hidden microbial diversity and functional potential

Weipeng Zhang, Wei Ding, Yong-Xin Li, Chun‐Fung Tam, S. Bougouffa, Ruojun Wang, Bite Pei, Ho-Yin Chiang, Pok M. Leung, Yan-Hong Lu, Jin Sun, He Fu, V. Bajic, Hongbin Liu, N. Webster, P. Qian

Nature Communications

DOI

2019

Potential Interactions between Clade SUP05 Sulfur-Oxidizing Bacteria and Phages in Hydrothermal Vent Sponges

Kun Zhou, Rui Zhang, Jin Sun, Weipeng Zhang, R. Tian, Chong Chen, S. Kawagucci, Ying Xu

Applied and Environmental Microbiology

DOI

2019

Potential SUP05-Phage Interactions in Hydrothermal Vent Sponges

Kun Zhou, Rui Zhang, Jin Sun, Weipeng Zhang, R. Tian, Chong Chen, S. Kawagucci, Ying Xu

2019

Distribution, diversity and functional dissociation of the mac genes in marine biofilms

Wei Ding, Weipeng Zhang, Ruojun Wang, Ya-Nan Sun, Bite Pei, Zhao-Ming Gao, P. Qian

Biofouling (Print)

DOI

2019

Host–Symbiont Interactions in Deep-Sea Chemosymbiotic Vesicomyid Clams: Insights From Transcriptome Sequencing

Yi Lan, Jin Sun, Weipeng Zhang, Ting Xu, Yu Zhang, Chong Chen, D. Feng, Hongbin Wang, Jun Tao, Jian-Wen Qiu, P. Qian

Frontiers in Marine Science

DOI

2018

Genome Reduction in Psychromonas Species within the Gut of an Amphipod from the Ocean’s Deepest Point

Weipeng Zhang, R. Tian, Jin Sun, S. Bougouffa, Wei Ding, Lin Cai, Yi Lan, Haoya Tong, Yong-Xin Li, A. Jamieson, V. Bajic, J. Drazen, D. Bartlett, P. Qian

mSystems

DOI

2018

Gut Microbial Divergence between Two Populations of the Hadal Amphipod Hirondellea gigas

Weipeng Zhang, H. Watanabe, Wei Ding, Yi Lan, R. Tian, Jin Sun, Chong Chen, Lin Cai, Yong-Xin Li, K. Oguri, T. Toyofuku, H. Kitazato, J. Drazen, D. Bartlett, P. Qian

Applied and Environmental Microbiology

DOI

2018

Identification of Barnacle Shell Proteins by Transcriptome and Proteomic Approaches

Y. Wong, N. Ozaki, Weipeng Zhang, Jin Sun, E. Yoshimura, Mieko Oguro-Okano, Y. Nogata, Hsiu-Chin Lin, B. K. Chan, P. Qian, K. Okano

DOI

2018

Dysregulation of Intestinal Health by Environmental Pollutants: Involvement of the Estrogen Receptor and Aryl Hydrocarbon Receptor.

Lian-Guo Chen, Weipeng Zhang, Jiang-Huan Hua, Chenyan Hu, Nelson Lok-Shun Lai, P. Qian, P. Lam, James C. W. Lam, Bingsheng Zhou

Environmental Science and Technology

DOI

2017

Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes

Jin Sun, Yu Zhang, Ting Xu, Yang Zhang, Huawei Mu, Yanjie Zhang, Yi Lan, Christopher J. Fields, Jerome Ho Lam Hui, Weipeng Zhang, Runsheng Li, Wenyan Nong, Fiona Ka Man Cheung, Jian-Wen Qiu, Pei-Yuan Qian

Nature Ecology & Evolution，Vol. 10, No. 50

DOI

2017

Molecular cross-talk between a chemosymbiotic Calyptogena clam and its endosymbiont shown through meta-transcriptome sequencing

Yi Lan, Jin Sun, Weipeng Zhang, Ting Xu, Chong Chen, Jian-Wen Qiu, P. Qian

2017

Linking genomic responses of gonads with reproductive impairment in marine medaka (Oryzias melastigma) exposed chronically to the chemopreventive and antifouling agent, 3,3'-diindolylmethane (DIM).

Lian-Guo Chen, D. Au, Chenyan Hu, Weipeng Zhang, Bingsheng Zhou, Lin Cai, J. Giesy, P. Qian

Aquatic Toxicology

DOI

2017

Genome Reduction and Microbe-Host Interactions Drive Adaptation of a Sulfur-Oxidizing Bacterium Associated with a Cold Seep Sponge

R. Tian, Weipeng Zhang, Lin Cai, Y. Wong, Wei Ding, P. Qian

mSystems

DOI

2016

Environmental switching during biofilm development in a cold seep system and functional determinants of species sorting

Weipeng Zhang, Renmao Tian, Yang Bo, Huiluo Cao, Lin Cai, Lianguo Chen, Guowei Zhou, Jin Sun, Xixiang Zhang, Abdulaziz Al-Suwailem, Pei-Yuan Qian

Molecular Ecology，Vol. 250, No. 90

DOI

2016

Genomic and Transcriptomic Evidence for Carbohydrate Consumption among Microorganisms in a Cold Seep Brine Pool

Weipeng Zhang, Wei Ding, Bo Yang, R. Tian, Shuo Gu, Haiwei Luo, P. Qian

Frontiers in Microbiology

DOI

2016

Post-translational modifications are enriched within protein functional groups important to bacterial adaptation within a deep-sea hydrothermal vent environment

Weipeng Zhang, Jin Sun, Huiluo Cao, R. Tian, Lin Cai, Wei Ding, P. Qian

Microbiome

DOI

2016

Endocrine Disruption throughout the Hypothalamus-Pituitary-Gonadal-Liver (HPGL) Axis in Marine Medaka (Oryzias melastigma) Chronically Exposed to the Antifouling and Chemopreventive Agent, 3,3'-Diindolylmethane (DIM).

Lian-Guo Chen, R. Ye, Weipeng Zhang, Chenyan Hu, Bingsheng Zhou, Drew R. Peterson, Doris W. T. Au, P. Lam, P. Qian

Chemical Research in Toxicology

DOI

2016

Chronic Exposure of Marine Medaka (Oryzias melastigma) to 4,5-Dichloro-2-n-octyl-4-isothiazolin-3-one (DCOIT) Reveals Its Mechanism of Action in Endocrine Disruption via the Hypothalamus-Pituitary-Gonadal-Liver (HPGL) Axis.

Lian-Guo Chen, Weipeng Zhang, R. Ye, Chenyan Hu, Qiangwei Wang, F. Seemann, D. Au, Bingsheng Zhou, J. Giesy, P. Qian

Environmental Science and Technology

DOI

2015

Hepatic proteomic responses in marine medaka (Oryzias melastigma) chronically exposed to antifouling compound butenolide [5-octylfuran-2(5H)-one] or 4,5-dichloro-2-N-octyl-4-isothiazolin-3-one (DCOIT).

Lian-Guo Chen, Jin Sun, Huo-Ming Zhang, D. Au, P. Lam, Weipeng Zhang, V. Bajic, Jian-Wen Qiu, P. Qian

Environmental Science and Technology

DOI

2015

Synchronized dynamics of bacterial niche-specific functions during biofilm development in a cold seep brine pool.

Weipeng Zhang, Yong Wang, S. Bougouffa, R. Tian, Huiluo Cao, Yong-Xin Li, Lin Cai, Y. Wong, Gen Zhang, Guowei Zhou, Xi-Xiang Zhang, V. Bajic, A. Al-Suwailem, P. Qian

Environmental Microbiology

DOI

2014

Toward Understanding the Dynamics of Microbial Communities in an Estuarine System

Weipeng Zhang, S. Bougouffa, Yong Wang, O. Lee, Jiangke Yang, C. Chan, Xingyu Song, P. Qian

PLoS ONE

DOI

2013

Adaptation of intertidal biofilm communities is driven by metal ion and oxidative stresses

Weipeng Zhang, Yong Wang, O. Lee, R. Tian, Huiluo Cao, Zhao-Ming Gao, Yong-Xin Li, Li Yu, Ying Xu, P. Qian

Scientific Reports

DOI

精选作品

期刊论文

A N-methylated antimicrobial peptide targets the fructose transporter FruA of Staphylococcus aureus

Siderophore sharing protects clonal Pseudomonas aeruginosa biofilms from colistin

A synthetic community derived from marine microplastic biofilms for efficient nitrate removal

Intricate chemosymbiosis in a widespread shallow-water thyasirid clam

Genomic and chemical analyses of 713 marine biofilm-derived bacterial strains

Unlocking the unexplored AMPSphere in marine rare species

Regulation of DMSP organosulfur cycling in ubiquitous Roseobacter marine bacteria

An endogenous synthetic bacterial community mitigates nitrite toxicity in shrimps

Identifying a key Vibrio group that causes mass mortality in Zhikong scallops

High-level polymyxin B resistance and underlying mechanism in a multidrug-resistant Acinetobacter strain isolated from the marine plastisphere

Branched-chain amino acid metabolism supports Roseobacteraceae positive interactions in marine biofilms

Genomic Features and Antimicrobial Activity of Phaeobacter inhibens Strains from Marine Biofilms

Genomic Analysis of Novel Sulfitobacter Bacterial Strains Isolated from Marine Biofilms

Synthetic biofilm community for efficient phosphorus removal from high-salinity wastewater

Bioprospecting of culturable marine biofilm bacteria for novel antimicrobial peptides

Acute nitrite exposure causes gut microbiota dysbacteriosis and proliferation of pathogenic Photobacterium in shrimp

Acute Ammonia Causes Pathogenic Dysbiosis of Shrimp Gut Biofilms

Genomic and transcriptomic insights into complex virus-prokaryote interactions in marine biofilms

Microbial resource mining from ancient biofilms

Biofilm formation stabilizes metabolism in a Roseobacteraceae bacterium under temperature increase

Gene co‐option, duplication and divergence of cement proteins underpin the evolution of bioadhesives across barnacle life histories

Early stage of biofilm assembly on microplastics is structured by substrate size and bacterial motility

Copiotrophy in a Marine-Biofilm-Derived Roseobacteraceae Bacterium Can Be Supported by Amino Acid Metabolism and Thiosulfate Oxidation

Meta-organism gene expression reveals that the impact of nitrate enrichment on coral larvae is mediated by their associated Symbiodiniaceae and prokaryotic assemblages

Anaerobic thiosulfate oxidation by the Roseobacter group is prevalent in marine biofilms

The Landscape of Global Ocean Microbiome: From Bacterioplankton to Biofilms

Profiling Signal Transduction in Global Marine Biofilms

Microbial Richness of Marine Biofilms Revealed by Sequencing Full-Length 16S rRNA Genes

TCA cycle enhancement and uptake of monomeric substrates support growth of marine Roseobacter at low temperature

Genomic analysis of Thalassospira sp. SW-3-3 reveals its genetic potential for phthalate pollution remediation

Halomonas profundi sp. nov., isolated from deep-sea sediment of the Mariana Trench

Expanding our understanding of marine viral diversity through metagenomic analyses of biofilms

Scientific and technological progress in the microbial exploration of the hadal zone

Hologenome analysis reveals dual symbiosis in the deep-sea hydrothermal vent snail Gigantopelta aegis

Culture Enrichment Combined With Long-Read Sequencing Facilitates Genomic Understanding of Hadal Sediment Microbes

Structural and Mechanistic Insights Into Dimethylsulfoxide Formation Through Dimethylsulfide Oxidation

Correction to: Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate cycling in polar oceans

Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate cycling in polar oceans

A novel ATP dependent dimethylsulfoniopropionate lyase in bacteria that releases dimethyl sulfide and acryloyl-CoA

Grincamycins P–T: Rearranged Angucyclines from the Marine Sediment-Derived Streptomyces sp. CNZ-748 Inhibit Cell Lines of the Rare Cancer Pseudomyxoma Peritonei

Oxidation of trimethylamine to trimethylamine N -oxide facilitates high hydrostatic pressure tolerance in a generalist bacterial lineage

Author response: A novel ATP dependent dimethylsulfoniopropionate lyase in bacteria that releases dimethyl sulfide and acryloyl-CoA

Evolutionary Trajectory of the Replication Mode of Bacterial Replicons

Exploring the Influence of Signal Molecules on Marine Biofilms Development

Correction to: Structure and function of the Arctic and Antarctic marine microbiota as revealed by metagenomics

Structure and function of the Arctic and Antarctic marine microbiota as revealed by metagenomics

The Scaly-foot Snail genome and implications for the origins of biomineralised armour

Nutrient gradients simulate different adjustments of coral-algal symbiosis

Experimental evidence for long‐term coexistence of copiotrophic and oligotrophic bacteria in pelagic surface seawater

Metagenomic Analysis of Zinc Surface-Associated Marine Biofilms

Marine biofilms constitute a bank of hidden microbial diversity and functional potential

Potential Interactions between Clade SUP05 Sulfur-Oxidizing Bacteria and Phages in Hydrothermal Vent Sponges

Potential SUP05-Phage Interactions in Hydrothermal Vent Sponges

Distribution, diversity and functional dissociation of the mac genes in marine biofilms

Host–Symbiont Interactions in Deep-Sea Chemosymbiotic Vesicomyid Clams: Insights From Transcriptome Sequencing

Genome Reduction in Psychromonas Species within the Gut of an Amphipod from the Ocean’s Deepest Point

Gut Microbial Divergence between Two Populations of the Hadal Amphipod Hirondellea gigas

Identification of Barnacle Shell Proteins by Transcriptome and Proteomic Approaches

Dysregulation of Intestinal Health by Environmental Pollutants: Involvement of the Estrogen Receptor and Aryl Hydrocarbon Receptor.

Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes

Molecular cross-talk between a chemosymbiotic Calyptogena clam and its endosymbiont shown through meta-transcriptome sequencing

Linking genomic responses of gonads with reproductive impairment in marine medaka (Oryzias melastigma) exposed chronically to the chemopreventive and antifouling agent, 3,3'-diindolylmethane (DIM).

Genome Reduction and Microbe-Host Interactions Drive Adaptation of a Sulfur-Oxidizing Bacterium Associated with a Cold Seep Sponge

Environmental switching during biofilm development in a cold seep system and functional determinants of species sorting

Genomic and Transcriptomic Evidence for Carbohydrate Consumption among Microorganisms in a Cold Seep Brine Pool

Post-translational modifications are enriched within protein functional groups important to bacterial adaptation within a deep-sea hydrothermal vent environment

Endocrine Disruption throughout the Hypothalamus-Pituitary-Gonadal-Liver (HPGL) Axis in Marine Medaka (Oryzias melastigma) Chronically Exposed to the Antifouling and Chemopreventive Agent, 3,3'-Diindolylmethane (DIM).

Chronic Exposure of Marine Medaka (Oryzias melastigma) to 4,5-Dichloro-2-n-octyl-4-isothiazolin-3-one (DCOIT) Reveals Its Mechanism of Action in Endocrine Disruption via the Hypothalamus-Pituitary-Gonadal-Liver (HPGL) Axis.

Hepatic proteomic responses in marine medaka (Oryzias melastigma) chronically exposed to antifouling compound butenolide [5-octylfuran-2(5H)-one] or 4,5-dichloro-2-N-octyl-4-isothiazolin-3-one (DCOIT).

Synchronized dynamics of bacterial niche-specific functions during biofilm development in a cold seep brine pool.

Toward Understanding the Dynamics of Microbial Communities in an Estuarine System

Adaptation of intertidal biofilm communities is driven by metal ion and oxidative stresses

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Shallow-water chemosymbiotic clams are a globally significant and previously overlooked carbon sink

Coordinated regulation of DMSP demethylation and cleavage in abundant marine bacteria

Mutual cross-feeding drives marine biofilm assembly on various carbon sources

Neo-functionalization of lineage-specific cement protein paralogs underpin the evolution of barnacle bioadhesives in larval and adult life stages

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