许艳｜哈尔滨医科大学｜学者主页

2024

scPAS: single-cell phenotype-associated subpopulation identifier

Aimin Xie, Hao Wang, Jiaxu Zhao, Zhaoyang Wang, Jinyuan Xu, Yan Xu

Briefings in Bioinformatics

DOI

2024

Identification of CAF-related lncRNAs at the pan-cancer level represents a potential carcinogenic risk

Ming‐Wei Wang, Minghui Jiang, Aimin Xie, Nan Zhang, Yan Xu

Human Molecular Genetics

DOI

2022

Upregulation of CXCL1 and LY9 contributes to BRCAness in ovarian cancer and mediates response to PARPi and immune checkpoint blockade

Tingting Chen, Tong Yu, Shuping Zhuang, Yiding Geng, Junwen Xue, Jiayi Wang, Liqiang Ai, Bo Chen, Zhangxiang Zhao, Yawei Li, Jinghao Wang, Haihai Liang, Yan Xu, Yunyan Gu

British Journal of Cancer

DOI

2021

Strongly preserved modules between cancer tissue and cell line contribute to drug resistance analysis across multiple cancer types

Siyao Dong, Chengyan Song, Baocui Qi, Xiaochen Jiang, Lu Liu, Yan Xu

Genomics

DOI

2021

Identification of Primary and Metastatic Lung Cancer-Related lncRNAs and Potential Targeted Drugs Based on ceRNA Network

Siyao Dong, Cheng Wu, Chengyan Song, Baocui Qi, Lu Liu, Yan Xu

Frontiers in Oncology

DOI

2020

An individualized transcriptional signature to predict the epithelial-mesenchymal transition based on relative expression ordering

Tingting Chen, Zhangxiang Zhao, Bo Chen, Yuquan Wang, Fan Yang, Chengyu Wang, Qi Dong, Yaoyao Liu, Haihai Liang, Wenyuan Zhao, Lishuang Qi, Yan Xu, Yunyan Gu

Aging

DOI

2020

Identification and Characterization of the Copy Number Dosage-Sensitive Genes in Colorectal Cancer

Zhiqiang Chang, Xinxin Liu, Wenyuan Zhao, Yan Xu

Molecular Therapy — Methods & Clinical Development

DOI

2019

Identification of cancer prognosis-associated lncRNAs based on the miRNA-TF co-regulatory motifs and dosage sensitivity

Yinling Zhu, Siyao Dong, Yanjiao Zhu, Yichuan Zhao, Yan Xu

Molecular Omics

DOI

2019

DNA co-methylation analysis of lincRNAs across nine cancer types reveals novel potential epigenetic biomarkers in cancer

Yunzhen Wei, Siyao Dong, Yanjiao Zhu, Yichuan Zhao, Cheng Wu, Yinling Zhu, Kun Li, Yan Xu

Epigenomics

DOI

2019

Systematic identification of dysregulated lncRNAs associated with platinum-based chemotherapy response across 11 cancer types

Yanjiao Zhu, Yichuan Zhao, Siyao Dong, Lu Liu, Lin Tai, Yan Xu

Genomics

DOI

2018

Identification of cancer‐related potential biomarkers based on lnc RNA –pseudogene– mRNA competitive networks

Cheng Wu, Yunzhen Wei, Yinling Zhu, Kun Li, Yanjiao Zhu, Yichuan Zhao, Zhiqiang Chang, Yan Xu

FEBS Letters

DOI

2017

基于miRNA-TF调控网络识别乳腺癌亚型关键调控子

韩晓乐，赵宁，刘永晶，严自创，张强，周元帅，张瑞，许艳

《哈尔滨医科大学学报》

2017

Identification of potential cancer-related pseudogenes in lung adenocarcinoma based on ceRNA hypothesis

Yunzhen Wei, Zhiqiang Chang, Cheng Wu, Yinling Zhu, Kun Li, Yan Xu

Oncotarget

DOI

2017

Integrated analysis of dosage effect lncRNAs in lung adenocarcinoma based on comprehensive network

Yunzhen Wei, Zichuang Yan, Cheng Wu, Qiang Zhang, Yinling Zhu, Kun Li, Yan Xu

Oncotarget

DOI

2017

The characteristic landscape of lncRNAs classified by RBP–lncRNA interactions across 10 cancers

Qiang Zhang, Yunzhen Wei, Zichuang Yan, Cheng Wu, Zhiqiang Chang, Yinling Zhu, Kun Li, Yan Xu

Molecular BioSystems

DOI

2016

The functional consequences and prognostic value of dosage sensitivity in ovarian cancer

Zichuang Yan, Yongjing Liu, Yunzhen Wei, Ning Zhao, Qiang Zhang, Cheng Wu, Zhiqiang Chang, Yan Xu

Molecular BioSystems

DOI

2016

Optimization of cell lines as tumour models by integrating multi-omics data

Ning Zhao, Yongjing Liu, Yunzhen Wei, Zichuang Yan, Qiang Zhang, Cheng Wu, Zhiqiang Chang, Yan Xu

Briefings in Bioinformatics

DOI

2016

A comparative analysis reveals the dosage sensitivity and regulatory patterns of lncRNA in prostate cancer

Yongjing Liu, Rui Zhang, Ning Zhao, Qiang Zhang, Zichuang Yan, Zhiqiang Chang, Yunzhen Wei, Cheng Wu, Jin Xu, Yan Xu

Molecular BioSystems

DOI

2015

Identification of Biomarker and Co-Regulatory Motifs in Lung Adenocarcinoma Based on Differential Interactions

Ning Zhao, Yongjing Liu, Zhiqiang Chang, Kening Li, Rui Zhang, Yuanshuai Zhou, Fujun Qiu, Xiaole Han, Yan Xu

PLoS ONE

DOI

2015

An integrated approach to reveal miRNAs’ impacts on the functional consequence of copy number alterations in cancer

Kening Li, Yongjing Liu, Yuanshuai Zhou, Rui Zhang, Ning Zhao, Zichuang Yan, Qiang Zhang, Shujuan Zhang, Fujun Qiu, Yan Xu

Scientific Reports

DOI

2015

ICan: An Integrated Co-Alteration Network to Identify Ovarian Cancer-Related Genes

Yuanshuai Zhou, Yongjing Liu, Kening Li, Rui Zhang, Fujun Qiu, Ning Zhao, Yan Xu

PLoS ONE

DOI

2014

Construction of a lncRNA–PCG bipartite network and identification of cancer-related lncRNAs: a case study in prostate cancer

Yongjing Liu, Rui Zhang, Fujun Qiu, Kening Li, Yuanshuai Zhou, Desi Shang, Yan Xu

Molecular BioSystems

DOI

2013

Functional analysis of microRNA and transcription factor synergistic regulatory network based on identifying regulatory motifs in non-small cell lung cancer

Kening Li, Zihui Li, Ning Zhao, Yaoqun Xu, Yongjing Liu, Yongjing Liu, Yuanshuai Zhou, Desi Shang, Fujun Qiu, Rui Zhang, Zhiqiang Chang, Yan Xu, Yan Xu

BMC Systems Biology

DOI

2012

CNVD: Text mining-based copy number variation in disease database

Fujun Qiu, Yan Xu, Kening Li, Zihui Li, Yufeng Liu, Huizi DuanMu, Shanzhen Zhang, Zhiyang Li, Zhiqiang Chang, Yuanshuai Zhou, Rui Zhang, Shujuan Zhang, Chunquan Li, Yan Zhang, Minzhai Liu, Xia Li

Human Mutation

DOI

2012

Calculating phenotypic similarity between genes using hierarchical structure data based on semantic similarity

Shanzhen Zhang, Zhiqiang Chang, Zhiyang Li, Huizi DuanMu, Zihui Li, Kening Li, Yufeng Liu, Fujun Qiu, Yan Xu

Gene

DOI

2011

Analysis of drug addiction mechanism based on functional and pathway association of differential co-expressed genes

Kening Li, Yufeng Liu, Zihui Li, Shujuan Zhang, Chao Wu, Yan Xu

Int J Genet

DOI

2011

Analysis of functional and pathway association of differential co-expressed genes: A case study in drug addiction

Zihui Li, Yu-feng Liu, Kening Li, Huizi DuanMu, Zhiqiang Chang, Zhiyang Li, Shan-zhen Zhang, Yan Xu

Journal of Biomedical Informatics

DOI

2011

The application of gene co-expression network reconstruction based on CNVs and gene expression microarray data in breast cancer

Yan Xu, Huizi DuanMu, Zhiqiang Chang, Shanzhen Zhang, Zhiyang Li, Zihui Li, Yufeng Liu, Kening Li, Fujun Qiu, Xia Li

Molecular Biology Reports

DOI

2010

Prediction of human protein–protein interaction by a mixed Bayesian model and its application to exploring underlying cancer-related pathway crosstalk

Yan Xu, Wen Hu, Zhiqiang Chang, Huizi DuanMu, Shanzhen Zhang, Zhiyang Li, Zihui Li, Lili Yu, Xia Li

Journal of The Royal Society Interface

DOI

2009

Mining the Relationship between Gene and Disease from Literature

Yan Xu, Zhiqiang Chang, Wen Hu, Lili Yu, Huizi DuanMu, Xia Li

International Conference on Fuzzy Systems and Knowledge Discovery (FSKD)

DOI

2009

Relationship Mining Among the Entities Associated with GPCRs

Zhiqiang Chang, Yan Xu, Shanzhen Zhang, Wen Hu, Zhiyang Li, Xing Wang, Lili Yu, Huizi DuanMu

DOI

2008

The Research on the Relationship between Opioid Receptors

Yan Xu, Xia Li, Wen Hu, Lili Yu

International Conference on Natural Computation (ICNC)

DOI

2007

The Research on the Relationship Between Adrenergic Receptor Subtypes

Hailong Yu, Yan Xu, Yun Xiao, Xia Li

DOI

许艳

精选作品

期刊论文

scPAS: single-cell phenotype-associated subpopulation identifier

Identification of CAF-related lncRNAs at the pan-cancer level represents a potential carcinogenic risk

Upregulation of CXCL1 and LY9 contributes to BRCAness in ovarian cancer and mediates response to PARPi and immune checkpoint blockade

Strongly preserved modules between cancer tissue and cell line contribute to drug resistance analysis across multiple cancer types

Identification of Primary and Metastatic Lung Cancer-Related lncRNAs and Potential Targeted Drugs Based on ceRNA Network

An individualized transcriptional signature to predict the epithelial-mesenchymal transition based on relative expression ordering

Identification and Characterization of the Copy Number Dosage-Sensitive Genes in Colorectal Cancer

Identification of cancer prognosis-associated lncRNAs based on the miRNA-TF co-regulatory motifs and dosage sensitivity

DNA co-methylation analysis of lincRNAs across nine cancer types reveals novel potential epigenetic biomarkers in cancer

Systematic identification of dysregulated lncRNAs associated with platinum-based chemotherapy response across 11 cancer types

Identification of cancer‐related potential biomarkers based on lnc RNA –pseudogene– mRNA competitive networks

基于miRNA-TF调控网络识别乳腺癌亚型关键调控子

Identification of potential cancer-related pseudogenes in lung adenocarcinoma based on ceRNA hypothesis

Integrated analysis of dosage effect lncRNAs in lung adenocarcinoma based on comprehensive network

The characteristic landscape of lncRNAs classified by RBP–lncRNA interactions across 10 cancers

The functional consequences and prognostic value of dosage sensitivity in ovarian cancer

Optimization of cell lines as tumour models by integrating multi-omics data

A comparative analysis reveals the dosage sensitivity and regulatory patterns of lncRNA in prostate cancer

Identification of Biomarker and Co-Regulatory Motifs in Lung Adenocarcinoma Based on Differential Interactions

An integrated approach to reveal miRNAs’ impacts on the functional consequence of copy number alterations in cancer

ICan: An Integrated Co-Alteration Network to Identify Ovarian Cancer-Related Genes

Construction of a lncRNA–PCG bipartite network and identification of cancer-related lncRNAs: a case study in prostate cancer

Functional analysis of microRNA and transcription factor synergistic regulatory network based on identifying regulatory motifs in non-small cell lung cancer

CNVD: Text mining-based copy number variation in disease database

Calculating phenotypic similarity between genes using hierarchical structure data based on semantic similarity

Analysis of drug addiction mechanism based on functional and pathway association of differential co-expressed genes

Analysis of functional and pathway association of differential co-expressed genes: A case study in drug addiction

The application of gene co-expression network reconstruction based on CNVs and gene expression microarray data in breast cancer

Prediction of human protein–protein interaction by a mixed Bayesian model and its application to exploring underlying cancer-related pathway crosstalk

Mining the Relationship between Gene and Disease from Literature

Relationship Mining Among the Entities Associated with GPCRs

The Research on the Relationship between Opioid Receptors

The Research on the Relationship Between Adrenergic Receptor Subtypes