孙善文｜东北林业大学｜学者主页

期刊论文

2026

CS-DTA: a language model-driven framework for robust drug-target affinity prediction under strict cold-start scenarios

Zhaokun Jiang, Heying Dai, Yongxv Chen, Baixue Qiao, Shanwen Sun

Frontiers in Chemistry

DOI

2026

Editorial: Machine learning for mining plant functional genes

Shanwen Sun, Quan Zou, Lijun Dou

Frontiers in Plant Science

DOI

2026

Integrative Multi-Omics Analysis of Gut Microbiota Dysbiosis and Host–Microbiome Interaction Mechanisms in Hypertension

Wenkai Lai, Shao-Ping Huang, Yuchen Zhang, Shirong Lai, Shanwen Sun, Furong Tang, Hai-Dan Yan, Fenglong Yang

bioRxiv

DOI

2025

植物单细胞基因调控网络推断研究进展

张旭东，孙善文

《现代农业科技》

2025

Deep learning‐based annotation of plant abiotic stress resistance genes for crops

Hongmei Zhang, Xuanrui Liu, Wuyong Liu, Shuda Wang, Yiqi Li, Yiqi Li, Wei Xiang, Qinghua Yang, Aiqin Zhang, Guohua Wang, Yang Li, Yang Li, Shanwen Sun

The Plant Journal

DOI

2025

The FERM guild: a differentially correlated microbial module drives hypertension via metabolic flux perturbations

Wenkai Lai, Yuchen Zhang, Shao-Ping Huang, Shirong Lai, F. Lin, Zi-Wei Wang, Shanwen Sun, Fenglong Yang

bioRxiv

DOI

2024

Deep learning in template-free de novo biosynthetic pathway design of natural products

Xueying Xie, Lin Gui, Baixue Qiao, Guohua Wang, Shan Huang, Yuming Zhao, Shanwen Sun

Briefings in Bioinformatics

DOI

2024

A putative Na+/H+ antiporter BpSOS1 contributes to salt tolerance in birch

Minghui Zhang, Mingke Wu, Tao Xu, Junfeng Cao, Zihui Zhang, Tianxu Zhang, Qingyi Xie, Qingyi Xie, Jiang Wang, Shanwen Sun, Qingzhu Zhang, Renyi Ma, Linan Xie

Plant Science

DOI

2024

A DNA demethylase reduces seed size by decreasing the DNA methylation of AT-rich transposable elements in soybean

Wanpeng Wang, Tianxu Zhang, Chunyu Liu, Chunyan Liu, Zhenfeng Jiang, Zhaohan Zhang, Shahid Ali, Zhuozheng Li, Jiang Wang, Shanwen Sun, Qingshan Chen, Qingzhu Zhang, Linan Xie

Communications Biology

DOI

2024

Identifying nucleotide-binding leucine-rich repeat receptor and pathogen effector pairing using transfer-learning and bilinear attention network

Baixue Qiao, Shuda Wang, Mingjun Hou, Haodi Chen, Zhengwenyang Zhou, Xue-Ying Xie, Shaozi Pang, Chun-Xue Yang, Fenglong Yang, Quan Zou, Shanwen Sun

Bioinform.

DOI

2023

GwasWA: A GWAS one-stop analysis platform from WGS data to variant effect assessment

Yuming Zhao, Lin Gui, Chang Hou, Dandan Zhang, Shanwen Sun

Computers in Biology and Medicine

DOI

2023

Editorial: Machine learning on understanding the epigenetic mechanisms underlying plant adaptation and domestication

Shanwen Sun, Xiucai Ye, Quan Zou

Frontiers in Plant Science

DOI

2022

Climate-responsive DNA methylation is involved in the biosynthesis of lignin in birch

Bowei Chen, Yile Guo, Xu Zhang, Lishan Wang, Lesheng Cao, Tianxu Zhang, Zihui Zhang, Wei Jun Zhou, Linan Xie, Jiang Wang, Shanwen Sun, Chuanping Yang, Qingzhu Zhang

Frontiers in Plant Science

DOI

2022

PlantCADB: A Comprehensive Plant Chromatin Accessibility Database

Ke Ding, Shanwen Sun, Yang Luo, Chaoyue Long, Jingwen Zhai, Yixiao Zhai, Guohua Wang

Genomics Proteomics & Bioinformatics

DOI

2022

MAG2 and MAL Regulate Vesicle Trafficking and Auxin Homeostasis With Functional Redundancy

Xiaohui Ma, Xiaonan Zhao, Hailong Zhang, Yiming Zhang, Shanwen Sun, Ying Li, Zhengbiao Long, Yuqi Liu, Xiaomeng Zhang, Rongxia Li, Li Tan, Lixi Jiang, Jian‐Kang Zhu, Lixin Li

Frontiers in Plant Science

DOI

2022

A CD8+ T cell-associated immune gene panel for prediction of the prognosis and immunotherapeutic effect of melanoma

Shanwen Sun, Zheng-Ke Zhi, Yang Su, Jingxian Sun, Qian-Jun Li

Frontiers in Immunology

DOI

2020

Revisiting genome-wide association studies from statistical modelling to machine learning

Shanwen Sun, Benzhi Dong, Quan Zou

Briefings Bioinform.

DOI

2020

BP4RNAseq: a babysitter package for retrospective and newly generated RNA-seq data analyses using both alignment-based and alignment-free quantification method

Shanwen Sun, Lei Xu, Quan Zou, Guohua Wang

Bioinform.

DOI

2020

Identifying Antifreeze Proteins Based on Key Evolutionary Information

Shanwen Sun, H. Ding, Donghua Wang, Shu-Guang Han

Frontiers in Bioengineering and Biotechnology

DOI

2020

The Frequencies of Oppositely Charged, Uncharged Polar, and β-Branched Amino Acids Determine Proteins’ Thermostability

Shanwen Sun, Chun-Yan Ao, Donghua Wang, Benzhi Dong

IEEE Access

DOI

2019

Machine learning and its applications in plant molecular studies.

Shanwen Sun, Chun-yu Wang, H. Ding, Quan Zou

Briefings in Functional Genomics

DOI

预印本

2023

Syntaxin of plants 32 regulates pollen wall development and pollen tube cell wall integrity via controlling secretory pathway

Yuqi Liu, Xiaonan Zhao, Guangtao Qian, Xiaohui Ma, Ming-Lei Song, Guochen Qin, Shanwen Sun, Mingyu Wang, Kaiying Gu, Wei Sun, Jian‐Kang Zhu, Lixi Jiang, Lixin Li

bioRxiv (Cold Spring Harbor Laboratory)

DOI

孙善文

精选作品

期刊论文

CS-DTA: a language model-driven framework for robust drug-target affinity prediction under strict cold-start scenarios

Editorial: Machine learning for mining plant functional genes

Integrative Multi-Omics Analysis of Gut Microbiota Dysbiosis and Host–Microbiome Interaction Mechanisms in Hypertension

植物单细胞基因调控网络推断研究进展

Deep learning‐based annotation of plant abiotic stress resistance genes for crops

The FERM guild: a differentially correlated microbial module drives hypertension via metabolic flux perturbations

Deep learning in template-free de novo biosynthetic pathway design of natural products

A putative Na+/H+ antiporter BpSOS1 contributes to salt tolerance in birch

A DNA demethylase reduces seed size by decreasing the DNA methylation of AT-rich transposable elements in soybean

Identifying nucleotide-binding leucine-rich repeat receptor and pathogen effector pairing using transfer-learning and bilinear attention network

GwasWA: A GWAS one-stop analysis platform from WGS data to variant effect assessment

Editorial: Machine learning on understanding the epigenetic mechanisms underlying plant adaptation and domestication

Climate-responsive DNA methylation is involved in the biosynthesis of lignin in birch

PlantCADB: A Comprehensive Plant Chromatin Accessibility Database

MAG2 and MAL Regulate Vesicle Trafficking and Auxin Homeostasis With Functional Redundancy

A CD8+ T cell-associated immune gene panel for prediction of the prognosis and immunotherapeutic effect of melanoma

Revisiting genome-wide association studies from statistical modelling to machine learning

BP4RNAseq: a babysitter package for retrospective and newly generated RNA-seq data analyses using both alignment-based and alignment-free quantification method

Identifying Antifreeze Proteins Based on Key Evolutionary Information

The Frequencies of Oppositely Charged, Uncharged Polar, and β-Branched Amino Acids Determine Proteins’ Thermostability

Machine learning and its applications in plant molecular studies.

预印本

Syntaxin of plants 32 regulates pollen wall development and pollen tube cell wall integrity via controlling secretory pathway

研究方向