Zhiao Wang, Ruihang Li, Wei Li, Xiaoding Ma, Shen Yan, Mao-Mao Li, Binhua Hu, Mingjing Tang, Guomin Zhou, Jian Wang, Jian-Hua Zhang (2026). Deep learning-based methods for phenotypic trait extraction in rice panicles. Frontiers in Plant Science.DOI
Kunchi Yu, Chunhui Liu, Joohyun Lee, Xiaoding Ma, Bing Han, Zhengwu Zhao, Soon-Wook Kwon, Longzhi Han, Di Cui (2026). Discovery of cold tolerance genes and favorable alleles in Kam sweet rice across various growth stages. Theoretical and Applied Genetics.DOI
Xiliu Cheng, Haoran Wang, Mingjie Lyu, Meiting Gao, Guangzhi Zhang, Yanjia Gong, Yanqing Chen, Xianjun Sun, Xiaoding Ma, Weihua Qiao, Fan Zhang, J Liu, J Liu (2026). Green Revolution-associated DELLA accumulation enhances salt tolerance in cereals by disrupting INDETERMINATE SPIKELET1 biomolecular condensates. Molecular Plant.DOI
Hui Wen Liang, Chunhui Liu, Leiyue Geng, Xiaoding Ma, Bing Han, Zhengwu Zhao, Longzhi Han, Di Cui (2026). Genome-Wide Association Study Identifies Candidate Genes for Salt Tolerance in Traditional Rice Landraces. Rice.DOI
Yu Shicong, Nenggang Chen, Lanying Wang, Tang Yulin, Shuqin Zheng, Luo Kaiyuan, He Zhiyuan, Wang Ping, Li Hui, Xiaoqing Yan, Anping Du, Bai Yulu, Liu Xiaolan, Liang Jing, Ma Xiaoding, Pu ZhiGang, Binhua Hu (2026). LRDS1, a BEL1-like Homeobox Transcription Factor, Regulates Leaf Expansion and Drought Tolerance by Targeting RL14 in Rice. Rice Science.DOI
Fei Wang, Di Cui, Xiaoding Ma, Zichao Zhu, Bing Han, Chunhui Liu, Chutao Wang, Ying Xiong, Chunlin Long, Xianyong Li, Longzhi Han (2025). Geographic Divergence and Putative Candidate Gene Discovery of Rice Grain Quality in China. Rice.DOI
Bing Han, Zichao Zhu, Xiaoding Ma, Ying Xiong, Di Cui, Chutao Wang, Li Chen, Xianyong Li, Longzhi Han (2025). Identification of gene OsZIPH1 related to rice shattering using Bulk Segregant Analysis. Current Plant Biology.DOI
Bing Zou, Bing Han, Jianchang Sun, Mingmao Sun, Xiaoding Ma, Li Chen, Di Cui, Jing Ma, Xiaohong Guo, Longzhi Han (2025). Identification and Evolution of Salt‐Tolerant Genes in Weedy Rice Through High‐Throughput Resequencing. Plant Direct.DOI
Di Cui, Zichao Zhu, Soon‐Wook Kwon, Joohyun Lee, Mingmao Sun, Xiaoding Ma, Chutao Wang, Bing Han, Xianyong Li, Longzhi Han (2025). Metabolomic insights into the function and nutritional quality of special rice. Food Chemistry X.DOI
Duo Xia, Peizhou Xu, Shuqin Zheng, Le Xue, Yuejiao Yin, Zhuchen Yao, Sikai Ding, Yusen Lai, Yipei Wang, Xiaoding Ma, WU Xian-jun, Hao Zhou (2025). Haplotype Analysis of the GL7/GW7/SLG7 Gene and Its Application in Improving the Grain Quality of Three-Line Hybrid Rice. Rice.DOI
Xue Li, Sen Wang, Qiuyu Zhang, Bing Han, Di Cui, Longzhi Han, Jianxin Deng, Xiaoding Ma (2025). Identification of key genes associated with mesocotyl length through a genome-wide association study in rice. Frontiers in Plant Science.DOI
Kunchi Yu, Jin Liu, Mingmao Sun, Xiaoding Ma, Bing Han, Maomao Li, Zhengwu Zhao, Longzhi Han, Di Cui (2025). Candidate gene discovery for nitrogen use efficiency in rice based on genome-wide association study. Current Plant Biology.DOI
Xiaoding Ma, Hao Wang, Shen Yan, Chuanqing Zhou, Kunneng Zhou, Qiang Zhang, Maomao Li, Yaolong Yang, Danting Li, Peng Song, Cuifeng Tang, Leiyue Geng, Jianchang Sun, Zhiyuan Ji, Xianjun Sun, Yongli Zhou, Peng Zhou, Di Cui, Bing Han, Xin Jing, Qiang He, Fang Wei, Longzhi Han (2025). Large-scale genomic and phenomic analyses of modern cultivars empower future rice breeding design. Molecular Plant.DOI
Haolin Wang, Xiangzheng Fu, Lijia Liu, Yi Wang, Jingpeng Hong, Bintao Pan, Yaning Cao, Yanqing Chen, Yongsheng Cao, Xiaoding Ma, Wei Hua Fang, Shen Yan (2025). PhytoCluster: a generative deep learning model for clustering plant single-cell RNA-seq data. aBIOTECH.DOI
Qiuyu Zhang, Bing Han, Di Cui, Zhengwu Zhao, Longzhi Han, Xiaoding Ma (2025). Genome-wide association study to identify candidate genes for submergence tolerance during rice seed germination. Theoretical and Applied Genetics.DOI
Lina Zhang, Fei Wang, Chunhui Liu, Xiaoding Ma, Di Cui, Bing Han, Longzhi Han (2025). Linkage Mapping and Identification of Candidate Genes for Cold Tolerance in Rice (Oryza Sativa L.) at the Bud Bursting Stage. Rice.DOI
Aixia Jiao, Li Chen, Xiaoding Ma, Jing Ma, Di Cui, Bing Han, Jianchang Sun, Longzhi Han (2024). Linkage Mapping and Discovery of Candidate Genes for Drought Tolerance in Rice During the Vegetative Growth Period. Rice.DOI
Xiaoding Ma, Hao Wang, Shengyang Wu, Bing Han, Di Cui, Jin Liu, Qiang Ling Zhang, Xiuzhong Xia, Peng Song, Cuifeng Tang, Leiyue Geng, Yaolong Yang, Shen Yan, Kunneng Zhou, Longzhi Han (2024). DeepCCR : large‐scale genomics‐based deep learning method for improving rice breeding. Plant Biotechnology Journal.DOI
Xingye Yang, Shicong Yu, Shen Yan, Hao Wang, Wei Fang, Yanqing Chen, Xiaoding Ma, Longzhi Han (2024). Progress in Rice Breeding Based on Genomic Research. Genes.DOI
Yu Shicong, Ruxian Luo, Zheng Shu-qin, Ning Jing, Shi Yuanzhu, Guo Daiming, Jia Liangmeng, Wang Sen, Guizong Xiao, Guo Pengwang, Yang Li, Ma Xiaoding (2024). CHOLINE TRANSPORTER-RELATED 4 (CTR4) Is Involved in Drought and Saline Tolerance in Rice. Rice Science.DOI
Li Chen, Jing Ma, Xiaoding Ma, Di Cui, Bing Han, Jianchang Sun, Longzhi Han (2023). QTL analysis of drought tolerance traits in rice during the vegetative growth period. Euphytica.DOI
Leiyue Geng, Wei Zhang, Tuo Zou, Qi Du, Xiaoding Ma, Di Cui, Bing Han, Qixing Zhang, Longzhi Han (2023). Integrating linkage mapping and comparative transcriptome analysis for discovering candidate genes associated with salt tolerance in rice. Frontiers in Plant Science.DOI
Chunhui Liu, Tianyi Wang, Huicha Chen, Xiaoding Ma, Chengzhi Jiao, Di Cui, Bing Han, Xiaobing Li, Aixia Jiao, Ruan RenChao, Dayuan Xue, Yanjie Wang, Longzhi Han (2022). Genomic footprints of Kam Sweet Rice domestication indicate possible migration routes of the Dong people in China and provide resources for future rice breeding. Molecular Plant.DOI
Chunyan Ju, Xiaoding Ma, Bing Han, Wei Zhang, Zhengwu Zhao, Leiyue Geng, Di Cui, Longzhi Han (2022). Candidate gene discovery for salt tolerance in rice (Oryza sativa L.) at the germination stage based on genome-wide association study. Frontiers in Plant Science.DOI
Chunhui Liu, Yanjie Wang, Aixia Jiao, Xiaoding Ma, Di Cui, Xiaobing Li, Bing Han, Huicha Chen, Ruan RenChao, Dayuan Xue, Longzhi Han (2022). Effects of Traditional Ethnic Minority Food Culture on Genetic Diversity in Rice Landraces in Guizhou Province, China. Agronomy.DOI
Lina Zhang, Di Cui, Xiaoding Ma, Bing Han, Longzhi Han, Longzhi Han (2022). Comparative analysis of rice reveals insights into the mechanism of colored rice via widely targeted metabolomics. Food Chemistry.DOI
Qian Huang, Chunyan Ju, Yibing Cheng, Di Cui, Bing Han, Zhengwu Zhao, Xiaoding Ma, Longzhi Han (2022). QTL Mapping of Mesocotyl Elongation and Confirmation of a QTL in Dongxiang Common Wild Rice in China. Agronomy.DOI
Di Cui, Han Zhou, Xiaoding Ma, Zechuan Lin, Linhua Sun, Bing Han, Maomao Li, Jianchang Sun, Jin Liu, Guixiu Jin, Xianju Wang, Guilan Cao, Xing Wang Deng, Hang He, Longzhi Han (2022). Genomic insights on the contribution of introgressions from Xian/Indica to the genetic improvement of Geng/Japonica rice cultivars. Plant Communications.DOI
Chunhui Liu, Yanjie Wang, Xiaoding Ma, Di Cui, Bing Han, Dayuan Xue, Longzhi Han (2022). Traditional agricultural management of Kam Sweet Rice (Oryza sativa L.) in southeast Guizhou Province, China. Journal of Ethnobiology and Ethnomedicine.DOI
Chunhui Liu, Di Cui, Aixia Jiao, Xiaoding Ma, Xiaobing Li, Bing Han, Huicha Chen, Ruan RenChao, Yanjie Wang, Longzhi Han (2022). Kam Sweet Rice (Oryza sativa L.) Is a Special Ecotypic Rice in Southeast Guizhou, China as Revealed by Genetic Diversity Analysis. Frontiers in Plant Science.DOI
Jin Liu, Liqin Yu, Xiaoding Ma, Huiying Zhou, Di Cui, Jiaxiao Hu, Si Le, Bing Han, Chen Wu, Longzhi Han, Maomao Li (2022). Identification of the major quantitative trait locus cluster qGNPS4.1 for grain number and panicle structure in rice ( Oryza sativa ). Plant Breeding.DOI
Bing Han, Di Cui, Xiaoding Ma, Guilan Cao, Hui Zhang, Hee‐Jong Koh, Longzhi Han (2021). Evidence for evolution and selection of drought-resistant genes based on high-throughput resequencing in weedy rice. Journal of Experimental Botany.DOI
Lina Zhang, Jianghong Tang, Di Cui, Cuifeng Tang, Xiaoding Ma, A Xinxiang, Bing Han, Guilan Cao, Zhengwu Zhao, Hee‐Jong Koh, Longzhi Han (2021). Identification of QTLs for cold tolerance at the booting and flowering stages in rice (Oryza sativa L.). Euphytica.DOI
Di Cui, Cuifeng Tang, Hongfeng Lü, Jinmei Li, Xiaoding Ma, A Xinxiang, Bing Han, Yayun Yang, Chao Dong, Feifei Zhang, Luyuan Dai, Longzhi Han (2021). Genetic differentiation and restricted gene flow in rice landraces from Yunnan, China: effects of isolation-by-distance and isolation-by-environment. Rice.DOI
Ruyu Tang, Di Cui, Jian Feng Zhou, Wenqiu Li, Xiaoding Ma, Bing Han, Xiaohong Guo, Zhengwu Zhao, Longzhi Han (2021). Comparative analysis of genetic diversity of rice (Oryza sativa L.) varieties cultivated in different periods in China. Genetic Resources and Crop Evolution.DOI
Bing Han, Xiaoding Ma, Di Cui, Leiyue Geng, Guilan Cao, Hui Zhang, Longzhi Han (2020). Parallel reaction monitoring revealed tolerance to drought proteins in weedy rice (Oryza sativa f. spontanea). Scientific Reports.DOI
Bing Han, Xiaoding Ma, Di Cui, Yanjie Wang, Leiyue Geng, Guilan Cao, Hui Zhang, Longzhi Han (2020). Comprehensive Evaluation and Analysis of the Mechanism of Cold Tolerance Based on the Transcriptome of Weedy Rice Seedlings. Rice.DOI
Chen Chen, Bing-Shu He, Xingxun Liu, Xiaoding Ma, Yu-Jie Liu, Hong-Yan Yao, Peng Zhang, Junliang Yin, Xin Wei, H. Koh, Chen Yang, Hong-Wei Xue, Z. Fang, Yongli Qiao (2019). Pyrophosphate‐fructose 6‐phosphate 1‐phosphotransferase (PFP1) regulates starch biosynthesis and seed development via heterotetramer formation in rice (Oryza sativa L.). Plant Biotechnology Journal.DOI
Xiaoding Ma, Jiani Zhang, Bing Han, Jianghong Tang, Di Cui, Long-Zhi Han (2019). FLA, which encodes a homolog of UBP, is required for chlorophyll accumulation and development of lemma and palea in rice. Plant Cell Reports.DOI
Jian Ma, Yongfei Wang, Xiaoding Ma, Lingzhi Meng, Ruonan Jing, Fan Wang, Shuai Wang, Zhijun Cheng, Xin Zhang, Ling Jiang, Jiulin Wang, Jie Wang, Zhichao Zhao, Xiuping Guo, Qibing Lin, Fuqing Wu, Shanshan Zhu, Chuan-Yin Wu, Yu-Long Ren, Cailin Lei, Hu-qu Zhai, J. Wan (2019). Disruption of gene SPL35, encoding a novel CUE domain‐containing protein, leads to cell death and enhanced disease response in rice. Plant Biotechnology Journal.DOI
Bing Han, Xiaoding Ma, Di Cui, Yanjie Wang, Leiyue Geng, Guilan Cao, Hui Zhang, Hee‐Jong Koh, Longzhi Han (2019). Analysis of evolutionary relationships provides new clues to the origins of weedy rice. Ecology and Evolution.DOI
Jianghong Tang, Xiaoding Ma, Di Cui, Bing Han, Leiyue Geng, Zhengwu Zhao, Yafei Li, Longzhi Han (2019). QTL analysis of main agronomic traits in rice under low temperature stress. Euphytica.DOI
Xiaoding Ma, Bing Han, Jianghong Tang, Jiani Zhang, Di Cui, Leiyue Geng, Huiying Zhou, Maomao Li, Longzhi Han (2019). Construction of chromosome segment substitution lines of Dongxiang common wild rice (Oryza rufipogon Griff.) in the background of the japonica rice cultivar Nipponbare (Oryza sativa L.). Plant Physiology and Biochemistry.DOI
Di Cui, Hongfeng Lü, Cuifeng Tang, Jinmei Li, A Xinxiang, Tengqiong Yu, Xiaoding Ma, Enlai Zhang, Yanjie Wang, Guilan Cao, Furong Xu, Yongli Qiao, Luyuan Dai, Ruiqiang Li, Shilin Tian, Hee‐Jong Koh, Longzhi Han (2019). Genomic analyses reveal selection footprints in rice landraces grown under on‐farm conservation conditions during a short‐term period of domestication. Evolutionary Applications.DOI
Xiaoding Ma, Jianghong Tang, Jia-Ni Zhang, Di Cui, Hui Li, Maomao Li, Longzhi Han (2019). Development of molecular markers polymorphic between Dongxiang wild rice and Geng rice cultivar ‘Nipponbare’. ACTA AGRONOMICA SINICA.DOI
Yanjie Wang, Aixia Jiao, Huicha Chen, Xiaoding Ma, Di Cui, Bing Han, Ruan RenChao, Dayuan Xue, Longzhi Han (2018). Status and factors influencing on-farm conservation of Kam Sweet Rice (Oryza sativa L.) genetic resources in southeast Guizhou Province, China. Journal of Ethnobiology and Ethnomedicine.DOI
Bing Han, Jiao Wang, Yafei Li, Xiaoding Ma, Sumin Jo, Di Cui, Yanjie Wang, Dongsoo Park, You‐Chun Song, Guilan Cao, Xingsheng Wang, Jianchang Sun, Dongjin Shin, Longzhi Han (2018). Identification of quantitative trait loci associated with drought tolerance traits in rice (Oryza sativa L.) under PEG and field drought stress. Euphytica.DOI
Maomao Li, Xia Li, Liqin Yu, Jinwen Wu, Hui Li, Jin Liu, Xiaoding Ma, Sumin Jo, Dong-Soo Park, You‐Chun Song, Dongjin Shin, Longzhi Han (2018). Identification of QTLs associated with heat tolerance at the heading and flowering stage in rice (Oryza sativa L.). Euphytica.DOI
Yanjie Wang, Yanli Wang, Xiaodong Sun, Zhuoma Caiji, Jingbiao Yang, Di Cui, Guilan Cao, Xiaoding Ma, Bing Han, Dayuan Xue, Longzhi Han (2016). Influence of ethnic traditional cultures on genetic diversity of rice landraces under on-farm conservation in southwest China. Journal of Ethnobiology and Ethnomedicine.DOI
Jian Ma, Cailin Lei, Xing Xu, Kun Hao, Jiulin Wang, Zhijun Cheng, Xiaoding Ma, Jin Ma, Kun-Neng Zhou, Xin Zhang, Xiuping Guo, Fuqing Wu, Qibing Lin, Chunming Wang, Hu-qu Zhai, Hai-Yang Wang, J. Wan (2015). Pi64, Encoding a Novel CC-NBS-LRR Protein, Confers Resistance to Leaf and Neck Blast in Rice. Molecular Plant-Microbe Interactions.DOI
Xiaoding Ma, Jian Ma, Hong-Hong Zhai, Pei-Yong Xin, Jinfang Chu, Yongli Qiao, Long-Zhi Han (2015). CHR729 Is a CHD3 Protein That Controls Seedling Development in Rice. PLoS ONE.DOI
Di Cui, Jinmei Li, Cuifeng Tang, A Xinxiang, Tengqiong Yu, Xiaoding Ma, Enlai Zhang, Guilan Cao, Furong Xu, Yongli Qiao, Luyuan Dai, Longzhi Han (2015). Diachronic analysis of genetic diversity in rice landraces under on-farm conservation in Yunnan, China. Theoretical and Applied Genetics.DOI
Jian Ma, Xiaoding Ma, Zhichao Zhao, Shuai Wang, Jiulin Wang, Jie WANG, Zhijun Cheng, Cailin Lei (2015). Development and Application of a Functional Marker of the Blast Resistance Gene Pi35 in Rice. ACTA AGRONOMICA SINICA.DOI
Yinghua Pan, Hongliang Zhang, Dongling Zhang, Jinjie Li, Haiyan Xiong, Jianping Yu, Jilong Li, Muhammad Abdul Rehman Rashid, Gangling Li, Xiaoding Ma, Guilan Cao, Longzhi Han, Zichao Li (2015). Genetic Analysis of Cold Tolerance at the Germination and Booting Stages in Rice by Association Mapping. PLoS ONE.DOI
Di Cui, Chang-ying Xu, Yang Chun-gang, Qixing Zhang, Junguo Zhang, Xiaoding Ma, Yongli Qiao, Guilan Cao, Sanyuan Zhang, Longzhi Han (2014). Association mapping of salinity and alkalinity tolerance in improved japonica rice (Oryza sativa L. subsp. japonica Kato) germplasm. Genetic Resources and Crop Evolution.DOI
Jing-long Liang, Yingping Qu, Yang Chun-gang, Xiaoding Ma, Guilan Cao, Zhengwu Zhao, Sanyuan Zhang, Tao Zhang, Longzhi Han (2014). Identification of QTLs associated with salt or alkaline tolerance at the seedling stage in rice under salt or alkaline stress. Euphytica.DOI
Hui Li, Ling Jiang, Ji-Hyun Youn, Wei Sun, Zhijun Cheng, Tian-Yun Jin, Xiaoding Ma, Xiuping Guo, Jiulin Wang, Xin Zhang, Fuqing Wu, Chuan-Yin Wu, Seong-Ki Kim, J. Wan (2013). A comprehensive genetic study reveals a crucial role of CYP90D2/D2 in regulating plant architecture in rice (Oryza sativa). New Phytologist.DOI
Xue-Feng Ma, Zhijun Cheng, Rui-Zhen Qin, Yang Qiu, Yue-Qin Heng, Hui Yang, Yu-Long Ren, Xiao-Le Wang, Jing-Cui Bi, Xiaoding Ma, Xin Zhang, Jiulin Wang, Cailin Lei, Xiuping Guo, Jie Wang, Fuqing Wu, Ling Jiang, Hai-Yang Wang, J. Wan (2012). OsARG encodes an arginase that plays critical roles in panicle development and grain production in rice. The Plant Journal.DOI
Xiaoding Ma, Zhijun Cheng, Fuqing Wu, Ming-Na Jin, Liguo Zhang, Feng Zhou, Jiulin Wang, Kun-Neng Zhou, Jian Ma, Qibing Lin, Cailin Lei, J. Wan (2012). BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Rice. Plant Molecular Biology Reporter.DOI