包立随｜中国海洋大学｜学者主页

2026

FoxL2 exhibits two-stage expression and maintains the ovarian niche in a lophotrochozoan

Yaxin Yang, Ying Cao, Liangjie Liu, Lijing Zhang, Lijing Zhang, Tong Wang, Ya Shu, Xiaohui Ma, Guoqing Li, Xinyi Zhang, Lisui Bao, Xiaoting Huang, Xiaoting Huang, Zhenmin Bao, Shi Wang, Huilan Wei, Lingling Zhang, Lingling Zhang

Communications Biology

DOI

2026

Genomic mating strategy for papilla number in Apostichopus japonicus

Pin-Gan Ni, M. Nie, Yuan Tian, Kun-Yao Wu, Luo Wang, Lingshu Han, Ya-Qing Chang, Jun Ding, Yangfan Wang, Lisui Bao

Genomics Communications

DOI

2023

双壳贝类CK1基因家族的鉴定及表达分析

孙凤芝，吕珍立，刘福云，邢强，连姗姗，王师，包立随

《海洋与湖沼》

2023

Reference genomes of channel catfish and blue catfish reveal multiple pericentric chromosome inversions

G. Waldbieser, Shi-Kai Liu, Zihao Yuan, Caitlin E. Older, Dongya Gao, Chen-Yu Shi, B. Bosworth, Ning Li, Lisui Bao, M. Kirby, Yulin Jin, Monica L Wood, Brian Scheffler, S. Simpson, R. Youngblood, M. V. Duke, Linda Ballard, A. Phillippy, S. Koren, Zhan-Jiang Liu

BMC Biology

DOI

2022

Ancient homomorphy of molluscan sex chromosomes sustained by reversible sex-biased genes and sex determiner translocation

Wentao Han, Liangjie Liu, Jing Wang, Huilan Wei, Yuli Li, Lijing Zhang, Zhenyi Guo, Yajuan Li, Tian Liu, Qifan Zeng, Qiang Xing, Ya Shu, Tong Wang, Yaxin Yang, Meiwei Zhang, Ruojiao Li, Jiachen Yu, Zhongqi Pu, Jia Lv, Shanshan Lian, Jingjie Hu, Xiaoli Hu, Zhenmin Bao, Lisui Bao, Lingling Zhang, Shi Wang

Nature Ecology & Evolution，Vol. 60, No. 120

DOI

2022

Starfish infers signatures of complex genomic rearrangements across human cancers

Lisui Bao, X. Zhong, Yang Yang, Li-Xing Yang

Nature Cancer

DOI

2022

Genomic imprinting-like monoallelic paternal expression determines sex of channel catfish

Wenwen Wang, Yu-Jia Yang, Suxu Tan, Tao Zhou, Yang Liu, Changxu Tian, Lisui Bao, De Xing, B. Su, Jin-Hai Wang, Yu Zhang, Shi-Kai Liu, Huitong Shi, Dongya Gao, R. Dunham, Zhan-Jiang Liu

Science Advances

DOI

2022

Decoding the byssus fabrication by spatiotemporal secretome analysis of scallop foot

Xiaoting Dai, Xuan Zhu, Lisui Bao, Xiao-Mei Chen, Y. Miao, Yangping Li, Yu-Li Li, Jia Lv, Ling-Ling Zhang, Xiao-Ting Huang, Z. Bao, Shi Wang, Jing Wang

Computational and Structural Biotechnology Journal

DOI

2022

Identification of an Epigenetically Marked Locus within the Sex Determination Region of Channel Catfish

Yu-Jia Yang, Tao Zhou, Yang Liu, Changxu Tian, Lisui Bao, Wenwen Wang, Yu Zhang, Shi-Kai Liu, Huitong Shi, Suxu Tan, Dongya Gao, R. Dunham, Zhan-Jiang Liu

International Journal of Molecular Sciences

DOI

2021

Genomic differentiation and selection signatures of two elite varieties of Yesso scallop Mizuhopecten yessoensis

Jia Lv, Yantong Cai, Ping-Ping Liu, Xiao-Wen Huang, Zhenli Lv, Rongchao Zhang, Liang Zhao, Lisui Bao, Shi Wang, Jing-Jie Hu

Aquaculture

DOI

2021

High-quality reannotation of the king scallop genome reveals no ‘gene-rich’ feature and evolution of toxin resistance

Qi-Fan Zeng, Jing Liu, Chun-De Wang, Hao Wang, Ling-Ling Zhang, Jing-Jie Hu, Lisui Bao, Shi Wang

Computational and Structural Biotechnology Journal

DOI

2021

Genetic differentiation and selection signatures in two bay scallop (Argopecten irradians) breeds revealed by whole-genome resequencing analysis

Hao Wang, Jia Lv, Qi-Fan Zeng, Ya-Ran Liu, Qiang Xing, Shi Wang, Jing-Jie Hu, Lisui Bao

DOI

2021

Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway

Jian Carrot-Zhang, Xiao-Tong Yao, S. Devarakonda, Aditya Deshpande, J. Damrauer, T. Silva, Christopher K. Wong, H. Choi, I. Felau, A. G. Robertson, Mauro A. A. Castro, Lisui Bao, E. Rheinbay, E. Liu, Tuan Trieu, D. Haan, C. Yau, T. Hinoue, Yue-Xin Liu, Ofer Shapira, Kiran H. Kumar, K. Mungall, Hai-Lei Zhang, J. Lee, Ashton C. Berger, G. Gao, Binyamin Zhitomirsky, Wen-Wei Liang, Meng Zhou, S. Moorthi, A. Berger, E. Collisson, M. Zody, Li Ding, A. Cherniack, G. Getz, O. Elemento, C. Benz, J. Stuart, J. Zenklusen, R. Beroukhim, Jason C. Chang, Joshua D. Campbell, D. Hayes, Li-Xing Yang, P. Laird, J. Weinstein, D. Kwiatkowski, M. Tsao, W. Travis, E. Khurana, Benjamin P. Berman, K. Hoadley, N. Robine, M. Meyerson, R. Govindan, M. Imieliński, K. Arora, M. Shah, Jennifer M. Shelton, R. Bowlby, V. Friedl, M. Goldman, B. Craft, David I. Heiman, I. Hajirasouliha, C. Ricketts, P. Anur, K. Chiotti, S. Caesar-Johnson, J. Demchok, M. Ferguson, Anab Kemal, R. Tarnuzzer, Zhi-Ning Wang, Li-Ming Yang, P. Spellman, Benjamin J. Raphael, R. Akbani, Jing-Chun Zhu, Steven J. M. Jones, Hui Shen

Cell Reports

DOI

2020

Abstract 5895: Whole-genome characterization of lung adenocarcinomas lacking alterations in RTK/RAS/RAF/MAPK pathway

Jian Carrot-Zhang, S. Devarakonda, N. Robine, Xiao-Tong Yao, T. Silva, Jeff Damrauer, Aditya Deshpande, M. Tsao, C. Yao, Chris Wong, Lisui Bao, H. Choi, I. Felau, J. Zenklusen, G. Robertson, Tuan Trieua, Wei-Wei Liang, Meng Zhou, E. Rheinbay, N. Hayes, E. Khurana, L. Ding, P. Laird, O. Elemento, J. Weinstein, D. Kwiatkowski, C. Benz, J. Stuart, Li-Xing Yang, Mauro A. A. Castro, W. Travis, K. Hoadley, Benjamin P. Berman, M. Meyerson, R. Govindan, M. Imieliński

Molecular and Cellular Biology / Genetics

DOI

2019

A chromosome-level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth

Yan He, Yue Chang, Lisui Bao, Mengjun Yu, Rui Li, Jingjing Niu, Guangyi Fan, Weihao Song, Inge Seim, Yating Qin, Xuemei Li, Jinxiang Liu, Xiangfu Kong, Meiting Peng, Minmin Sun, Mengya Wang, Jiangbo Qu, Xuangang Wang, Xiaobing Liu, Xiaolong Wu, Xi Zhao, Xuliang Wang, Yaolei Zhang, Jiao Guo, Yang Liu, Kaiqiang Liu, Yilin Wang, He Zhang, Longqi Liu, Mingyue Wang, Haiyang Yu, Xubo Wang, Jie Cheng, Zhigang Wang, Xun Xu, Jian Wang, Huanming Yang, Simon Ming-Yuen Lee, Xin Liu, Quanqi Zhang, Jie Qi

Molecular Ecology Resources，Vol. 190, No. 50

DOI

2019

The Y chromosome sequence of the channel catfish suggests novel sex determination mechanisms in teleost fish

Lisui Bao, Changxu Tian, Shi-Kai Liu, Yu Zhang, Ahmed Elaswad, Zihao Yuan, K. Khalil, Fan-Yue Sun, Yu-Jia Yang, Tao Zhou, Ning Li, Suxu Tan, Qi-Fan Zeng, Yang Liu, Yue-Ru Li, Yun Li, Dongya Gao, R. Dunham, Kenneth Davis, G. Waldbieser, Zhan-Jiang Liu

BMC Biology

DOI

2018

Sea cucumber genome provides insights into saponin biosynthesis and aestivation regulation

Yu-Li Li, Ruijia Wang, Xiaogang Xun, Jing Wang, Lisui Bao, Ramesha Thimmappa, Jun Ding, Jing-Wei Jiang, Li-Heng Zhang, Tian-Qi Li, Jia Lv, Chuang Mu, Xiao-Li Hu, Ling-Ling Zhang, Jing Liu, Yuqiang Li, Lijie Yao, Wen-Qian Jiao, Yang-Fan Wang, Shan-Shan Lian, Zelong Zhao, Yao-Yao Zhan, Xiao-Ting Huang, Huan Liao, Jia Wang, Hong-Zhen Sun, Xue Mi, Yu Xia, Qiang Xing, Wei Lu, A. Osbourn, Zun-Chun Zhou, Ya-Qing Chang, Z. Bao, Shi Wang

Cell Discovery

DOI

2018

Increased Alternative Splicing as a Host Response to Edwardsiella ictaluri Infection in Catfish

Suxu Tan, Wenwen Wang, Xiaoxiao Zhong, Changxu Tian, Donghong Niu, Lisui Bao, Tao Zhou, Yulin Jin, Yu-Jia Yang, Zihao Yuan, Dongya Gao, R. Dunham, Zhan-Jiang Liu

Marine Biotechnology

DOI

2018

The annotation of repetitive elements in the genome of channel catfish (Ictalurus punctatus)

Zihao Yuan, Tao Zhou, Lisui Bao, Shi-Kai Liu, Huitong Shi, Yu-Jia Yang, Dongya Gao, R. Dunham, G. Waldbieser, Zhan-Jiang Liu

PLoS ONE

DOI

2018

Comparative transcriptome analysis of the swimbladder reveals expression signatures in response to low oxygen stress in channel catfish, Ictalurus punctatus.

Yu-Jia Yang, Qiang Fu, Xiao-Zhu Wang, Yang Liu, Qi-Fan Zeng, Yun Li, Sen Gao, Lisui Bao, Shi-Kai Liu, Dongya Gao, R. Dunham, Zhan-Jiang Liu

Physiological Genomics

DOI

2018

1 SC 2 THE FIRST NON-MAMMALIAN Y CHROMOSOME SEQUENCE REVEALS BCAR 1 AS THE CANDIDATE SEX DETERMINATION GENE IN CHANNEL CATFISH

2018

Genome-wide association analysis of intra-specific QTL associated with the resistance for enteric septicemia of catfish

Huitong Shi, Tao Zhou, Xiao-Zhu Wang, Yu-Jia Yang, Chenglong Wu, Shi-Kai Liu, Lisui Bao, Ning Li, Zihao Yuan, Yulin Jin, Suxu Tan, Wenwen Wang, Xiaoxiao Zhong, Guyu Qin, Xin Geng, Dongya Gao, R. Dunham, Zhan-Jiang Liu

Zeitschrift für Induktive Abstammungs- und Vererbungslehre

DOI

2018

Comparative transcriptome analysis reveals conserved branching morphogenesis related genes involved in chamber formation of catfish swimbladder.

Yu-Jia Yang, Qiang Fu, Yang Liu, Xiao-Zhu Wang, R. Dunham, Shi-Kai Liu, Lisui Bao, Qi-Fan Zeng, Tao Zhou, Ning Li, Zhen-Kui Qin, Chen Jiang, Dongya Gao, Zhan-Jiang Liu

Physiological Genomics

DOI

2018

Genome sequence of walking catfish (Clarias batrachus) provides insights into terrestrial adaptation

Ning Li, Lisui Bao, Tao Zhou, Zihao Yuan, Shi-Kai Liu, R. Dunham, Yuan-Ning Li, Kun Wang, Xiaoyan Xu, Yulin Jin, Qi-Fan Zeng, Sen Gao, Qiang Fu, Yang Liu, Yu-Jia Yang, Qi Li, A. Meyer, Dongya Gao, Zhan-Jiang Liu

BMC Genomics

DOI

2018

Chemokine C-C motif ligand 33 is a key regulator of teleost fish barbel development

Tao Zhou, Ning Li, Yulin Jin, Qi-Fan Zeng, W. Prabowo, Yang Liu, Changxu Tian, Lisui Bao, Shi-Kai Liu, Zihao Yuan, Qiang Fu, Sen Gao, Dongya Gao, R. Dunham, N. Shubin, Zhan-Jiang Liu

Proceedings of the National Academy of Sciences of the United States of America

DOI

2018

Comparative genome analysis of 52 fish species suggests differential associations of repetitive elements with their living aquatic environments

Zihao Yuan, Shi-Kai Liu, Tao Zhou, Changxu Tian, Lisui Bao, R. Dunham, Zhan-Jiang Liu

BMC Genomics

DOI

2017

Erratum to: Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research

H. Abdelrahman, M. Elhady, A. Alcivar-Warren, S. Allen, Rafet Al-Tobasei, Lisui Bao, B. Beck, H. Blackburn, B. Bosworth, John T. Buchanan, J. Chappell, W. Daniels, Sheng Dong, R. Dunham, E. Durland, Ahmed Elaswad, M. Gómez-Chiarri, Kamal Gosh, Xi-Ming Guo, P. Hackett, T. Hanson, D. Hedgecock, T. Howard, Leigh Holland, Molly Jackson, Yulin Jin, K. Khalil, T. Kocher, T. Leeds, Ning Li, Lauren Lindsey, Shi-Kai Liu, Zhan-Jiang Liu, K. Martin, Romi Novriadi, R. Odin, Y. Palti, E. Peatman, Dina A. Proestou, Guyu Qin, B. Reading, C. Rexroad, S. Roberts, M. Salem, A. Severin, Huitong Shi, C. Shoemaker, S. Stiles, Suxu Tan, Kathy F. J. Tang, W. Thongda, T. Tiersch, J. Tomasso, W. Prabowo, R. Vallejo, H. V. D. van der Steen, Khoi M. Vo, G. Waldbieser, Hanping Wang, Xiao-Zhu Wang, J. Xiang, Yu-Jia Yang, R. Yant, Zihao Yuan, Qi-Fan Zeng, Tao Zhou

BMC Genomics

DOI

2017

Identification of sex determination gene(s) through comparative sequence analysis of X and Y chromosomes in channel catfish

Lisui Bao

2017

Development of a 690 K SNP array in catfish and its application for genetic mapping and validation of the reference genome sequence

Qi-Fan Zeng, Qiang Fu, Yun Li, G. Waldbieser, B. Bosworth, Shi-Kai Liu, Yu-Jia Yang, Lisui Bao, Zihao Yuan, Ning Li, Zhan-Jiang Liu

Scientific Reports

DOI

2017

Analysis of Long Non‐coding RNAs

Ruijia Wang, Lisui Bao, Shi-Kai Liu, Zhan-Jiang Liu

DOI

2017

A deletion in the Hermansky–Pudlak syndrome 4 (Hps4) gene appears to be responsible for albinism in channel catfish

Yue-Ru Li, Xin Geng, Lisui Bao, Ahmed Elaswad, Kevin W. Huggins, R. Dunham, Zhan-Jiang Liu

Zeitschrift für Induktive Abstammungs- und Vererbungslehre

DOI

2017

Genome-Wide Association Study Reveals Multiple Novel QTL Associated with Low Oxygen Tolerance in Hybrid Catfish

Xiaoxiao Zhong, Xiao-Zhu Wang, Tao Zhou, Yulin Jin, Suxu Tan, Chen Jiang, Xin Geng, Ning Li, Huitong Shi, Qi-Fan Zeng, Yu-Jia Yang, Zihao Yuan, Lisui Bao, Shi-Kai Liu, Changxu Tian, E. Peatman, Qi Li, Zhan-Jiang Liu

Marine Biotechnology

DOI

2017

Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research

H. Abdelrahman, M. Elhady, A. Alcivar-Warren, S. Allen, Rafet Al-Tobasei, Lisui Bao, B. Beck, H. Blackburn, B. Bosworth, John T. Buchanan, J. Chappell, W. Daniels, Sheng Dong, R. Dunham, E. Durland, Ahmed Elaswad, M. Gómez-Chiarri, Kamal Gosh, Xi-Ming Guo, P. Hackett, T. Hanson, D. Hedgecock, T. Howard, Leigh Holland, Molly Jackson, Yulin Jin, Karim Kahlil, T. Kocher, T. Leeds, Ning Li, Lauren Lindsey, Shi-Kai Liu, Zhan-Jiang Liu, K. Martin, Romi Novriadi, R. Odin, Y. Palti, E. Peatman, Dina A. Proestou, Guyu Qin, B. Reading, C. Rexroad, S. Roberts, M. Salem, A. Severin, Huitong Shi, C. Shoemaker, S. Stiles, Suxu Tan, Kathy F. J. Tang, W. Thongda, T. Tiersch, J. Tomasso, W. Prabowo, R. Vallejo, H. V. D. van der Steen, Khoi M. Vo, G. Waldbieser, Hanping Wang, Xiao-Zhu Wang, J. Xiang, Yu-Jia Yang, R. Yant, Zihao Yuan, Qi-Fan Zeng, Tao Zhou

BMC Genomics

DOI

2017

DExD/H-box RNA helicase genes are differentially expressed between males and females during the critical period of male sex differentiation in channel catfish.

Changxu Tian, Suxu Tan, Lisui Bao, Qi-Fan Zeng, Shi-Kai Liu, Yu-Jia Yang, Xiaoxiao Zhong, Zhan-Jiang Liu

Comparative Biochemistry and Physiology - Part D:Genomics and Proteomics

DOI

2017

GWAS analysis of QTL for enteric septicemia of catfish and their involved genes suggest evolutionary conservation of a molecular mechanism of disease resistance

Tao Zhou, Shi-Kai Liu, Xin Geng, Yulin Jin, Chen Jiang, Lisui Bao, Jun Yao, Yu Zhang, Jia-Ren Zhang, Luyang Sun, Xiao-Zhu Wang, Ning Li, Suxu Tan, Zhan-Jiang Liu

Zeitschrift für Induktive Abstammungs- und Vererbungslehre

DOI

2017

Genome Annotation: Determination of the Coding Potential of the Genome

Ruijia Wang, Lisui Bao, Shi-Kai Liu, Zhan-Jiang Liu

DOI

2017

Multiple across-strain and within-strain QTLs suggest highly complex genetic architecture for hypoxia tolerance in channel catfish

Xiao-Zhu Wang, Shi-Kai Liu, Chen Jiang, Xin Geng, Tao Zhou, Ning Li, Lisui Bao, Yun Li, Jun Yao, Yu-Jia Yang, Xiaoxiao Zhong, Yulin Jin, R. Dunham, Zhan-Jiang Liu

Zeitschrift für Induktive Abstammungs- und Vererbungslehre

DOI

2017

Analysis of Repetitive Elements in the Genome

Lisui Bao, Zhan-Jiang Liu

DOI

2016

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts

Zhan-Jiang Liu, Shi-Kai Liu, Jun Yao, Lisui Bao, Jia-Ren Zhang, Yun Li, Chen Jiang, Luyang Sun, Ruijia Wang, Yu Zhang, Tao Zhou, Qi-Fan Zeng, Qiang Fu, Sen Gao, Ning Li, S. Koren, Yanliang Jiang, A. Zimin, Peng Xu, A. Phillippy, Xin Geng, Lin Song, Fan-Yue Sun, Chao Li, Xiao-Zhu Wang, Ailu Chen, Yulin Jin, Zihao Yuan, Yu-Jia Yang, Suxu Tan, E. Peatman, Jianguo Lu, Zhen-Kui Qin, R. Dunham, Zhao-Xia Li, T. Sonstegard, Jian-Bin Feng, R. Danzmann, Steven G. Schroeder, B. Scheffler, M. V. Duke, Linda L. Ballard, H. Kucuktas, L. Kaltenboeck, Hai-Xiang Liu, J. Armbruster, Yang-Jie Xie, M. Kirby, Yi Tian, Mary Elizabeth Flanagan, Wei-Jie Mu, Geoffrey C. Waldbieser

Nature Communications

DOI

2016

A Genome-Wide Association Study Identifies Multiple Regions Associated with Head Size in Catfish

Xin Geng, Shi-Kai Liu, Jun Yao, Lisui Bao, Jia-Ren Zhang, Chao Li, Ruijia Wang, Jin Sha, Peng Zeng, D. Zhi, Zhan-Jiang Liu

G3: Genes, Genomes, Genetics

DOI

2016

High-density interspecific genetic linkage mapping provides insights into genomic incompatibility between channel catfish and blue catfish.

Shi-Kai Liu, Yun Li, Z. Qin, Xin Geng, Lisui Bao, L. Kaltenboeck, H. Kucuktas, R. Dunham, Zhan-Jiang Liu

Animal Genetics

DOI

2016

Ribosomal protein genes are highly enriched among genes with allele-specific expression in the interspecific F1 hybrid catfish

Ailu Chen, Ruijia Wang, Shi-Kai Liu, E. Peatman, Luyang Sun, Lisui Bao, Chen Jiang, Chao Li, Yun Li, Qi-Fan Zeng, Zhan-Jiang Liu

Zeitschrift für Induktive Abstammungs- und Vererbungslehre

DOI

2015

A genome-wide association study in catfish reveals the presence of functional hubs of related genes within QTLs for columnaris disease resistance

Xin Geng, Jin Sha, Shi-Kai Liu, Lisui Bao, Jia-Ren Zhang, Ruijia Wang, Jun Yao, Chao Li, Jian-Bin Feng, Fan-Yue Sun, Luyang Sun, Chen Jiang, Yu Zhang, Ailu Chen, R. Dunham, D. Zhi, Zhan-Jiang Liu

BMC Genomics

DOI

2015

Claudin multigene family in channel catfish and their expression profiles in response to bacterial infection and hypoxia as revealed by meta-analysis of RNA-Seq datasets.

Luyang Sun, Shi-Kai Liu, Lisui Bao, Yun Li, Jian-Bin Feng, Zhan-Jiang Liu

Comparative Biochemistry and Physiology - Part D:Genomics and Proteomics

DOI

2014

Construction of a high-density, high-resolution genetic map and its integration with BAC-based physical map in channel catfish

Yun Li, Shi-Kai Liu, Zhen-Kui Qin, G. Waldbieser, Ruijia Wang, Luyang Sun, Lisui Bao, R. Danzmann, R. Dunham, Zhan-Jiang Liu

DNA Research

DOI

2014

Analysis of 52 Rab GTPases from channel catfish and their involvement in immune responses after bacterial infections.

Ruijia Wang, Yu Zhang, Shi-Kai Liu, Chao Li, Luyang Sun, Lisui Bao, Jian-Bin Feng, Zhan-Jiang Liu

Developmental and Comparative Immunology

DOI

2014

Identification and Analysis of Genome-Wide SNPs Provide Insight into Signatures of Selection and Domestication in Channel Catfish (Ictalurus punctatus)

Luyang Sun, Shi-Kai Liu, Ruijia Wang, Yanliang Jiang, Yu Zhang, Jia-Ren Zhang, Lisui Bao, L. Kaltenboeck, R. Dunham, G. Waldbieser, Zhan-Jiang Liu

PLoS ONE

DOI

2013

Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish

Ruijia Wang, Luyang Sun, Lisui Bao, Jia-Ren Zhang, Yanliang Jiang, Jun Yao, Lin Song, Jian-Bin Feng, Shi-Kai Liu, Zhan-Jiang Liu

BMC Genomics

DOI

2013

Whole genome comparative analysis of channel catfish (Ictalurus punctatus) with four model fish species

Yanliang Jiang, Xiao-Yu Gao, Shi-Kai Liu, Yu Zhang, Hong Liu, Fan-Yue Sun, Lisui Bao, G. Waldbieser, Zhan-Jiang Liu

BMC Genomics

DOI

2013

Generation of Physical Map Contig-Specific Sequences Useful for Whole Genome Sequence Scaffolding

Yanliang Jiang, P. Ninwichian, Shi-Kai Liu, Jia-Ren Zhang, H. Kucuktas, Fan-Yue Sun, L. Kaltenboeck, Luyang Sun, Lisui Bao, Zhan-Jiang Liu

PLoS ONE

DOI

精选作品

期刊论文

FoxL2 exhibits two-stage expression and maintains the ovarian niche in a lophotrochozoan

Genomic mating strategy for papilla number in Apostichopus japonicus

双壳贝类CK1基因家族的鉴定及表达分析

Reference genomes of channel catfish and blue catfish reveal multiple pericentric chromosome inversions

Ancient homomorphy of molluscan sex chromosomes sustained by reversible sex-biased genes and sex determiner translocation

Starfish infers signatures of complex genomic rearrangements across human cancers

Genomic imprinting-like monoallelic paternal expression determines sex of channel catfish

Decoding the byssus fabrication by spatiotemporal secretome analysis of scallop foot

Identification of an Epigenetically Marked Locus within the Sex Determination Region of Channel Catfish

Genomic differentiation and selection signatures of two elite varieties of Yesso scallop Mizuhopecten yessoensis

High-quality reannotation of the king scallop genome reveals no ‘gene-rich’ feature and evolution of toxin resistance

Genetic differentiation and selection signatures in two bay scallop (Argopecten irradians) breeds revealed by whole-genome resequencing analysis

Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway

Abstract 5895: Whole-genome characterization of lung adenocarcinomas lacking alterations in RTK/RAS/RAF/MAPK pathway

A chromosome-level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth

The Y chromosome sequence of the channel catfish suggests novel sex determination mechanisms in teleost fish

Sea cucumber genome provides insights into saponin biosynthesis and aestivation regulation

Increased Alternative Splicing as a Host Response to Edwardsiella ictaluri Infection in Catfish

The annotation of repetitive elements in the genome of channel catfish (Ictalurus punctatus)

Comparative transcriptome analysis of the swimbladder reveals expression signatures in response to low oxygen stress in channel catfish, Ictalurus punctatus.

1 SC 2 THE FIRST NON-MAMMALIAN Y CHROMOSOME SEQUENCE REVEALS BCAR 1 AS THE CANDIDATE SEX DETERMINATION GENE IN CHANNEL CATFISH

Genome-wide association analysis of intra-specific QTL associated with the resistance for enteric septicemia of catfish

Comparative transcriptome analysis reveals conserved branching morphogenesis related genes involved in chamber formation of catfish swimbladder.

Genome sequence of walking catfish (Clarias batrachus) provides insights into terrestrial adaptation

Chemokine C-C motif ligand 33 is a key regulator of teleost fish barbel development

Comparative genome analysis of 52 fish species suggests differential associations of repetitive elements with their living aquatic environments

Erratum to: Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research

Identification of sex determination gene(s) through comparative sequence analysis of X and Y chromosomes in channel catfish

Development of a 690 K SNP array in catfish and its application for genetic mapping and validation of the reference genome sequence

Analysis of Long Non‐coding RNAs

A deletion in the Hermansky–Pudlak syndrome 4 (Hps4) gene appears to be responsible for albinism in channel catfish

Genome-Wide Association Study Reveals Multiple Novel QTL Associated with Low Oxygen Tolerance in Hybrid Catfish

Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research

DExD/H-box RNA helicase genes are differentially expressed between males and females during the critical period of male sex differentiation in channel catfish.

GWAS analysis of QTL for enteric septicemia of catfish and their involved genes suggest evolutionary conservation of a molecular mechanism of disease resistance

Genome Annotation: Determination of the Coding Potential of the Genome

Multiple across-strain and within-strain QTLs suggest highly complex genetic architecture for hypoxia tolerance in channel catfish

Analysis of Repetitive Elements in the Genome

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts

A Genome-Wide Association Study Identifies Multiple Regions Associated with Head Size in Catfish

High-density interspecific genetic linkage mapping provides insights into genomic incompatibility between channel catfish and blue catfish.

Ribosomal protein genes are highly enriched among genes with allele-specific expression in the interspecific F1 hybrid catfish

A genome-wide association study in catfish reveals the presence of functional hubs of related genes within QTLs for columnaris disease resistance

Claudin multigene family in channel catfish and their expression profiles in response to bacterial infection and hypoxia as revealed by meta-analysis of RNA-Seq datasets.

Construction of a high-density, high-resolution genetic map and its integration with BAC-based physical map in channel catfish

Analysis of 52 Rab GTPases from channel catfish and their involvement in immune responses after bacterial infections.

Identification and Analysis of Genome-Wide SNPs Provide Insight into Signatures of Selection and Domestication in Channel Catfish (Ictalurus punctatus)

Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish

Whole genome comparative analysis of channel catfish (Ictalurus punctatus) with four model fish species

Generation of Physical Map Contig-Specific Sequences Useful for Whole Genome Sequence Scaffolding

研究方向