王建新

2026

基于组学和机器学习技术的下一代微生物风险评估方法与应用研究

《中国食品卫生杂志》

2026

基于Transformer网络的线性密码攻击方法研究

《计算机工程与科学》

2026

GPS拒止环境中无人机嵌套式视觉导航标志设计与优化

《北京电子科技学院学报》

2026

基于进程代数的SP网络结构密码形式化设计研究

《信息安全学报》

DOI

2026

面向学科交叉的计算机研究生创新人才培养模式探索与实践——以智慧医疗方向为例

《工业和信息化教育》

2026

基于荔枝派4A平台的AES算法设计及全流程国产化验证

《北京电子科技学院学报》

2026

“学科交叉，产教融合”下专业学位研究生培养模式探索——以中南大学金融科技班为例

《工业和信息化教育》

2026

Detection of Base Modifications Using Long-Read Sequencing: Methods, Applications, and Challenges

Big Data Mining and Analytics

DOI

2026

scMustree: a multi-scale functional hierarchy for single-cell transcriptomic analysis

Bioinformatics

DOI

2026

MPATDTI: A Meta-Path-Aware Transformer with Contrastive Learning for Drug-Target Interaction Prediction

Lecture notes in computer science

DOI

2026

SecPredNet: Joint Modeling of PLM Embeddings and Physicochemical Features for Signal Peptide Secretion Efficiency Prediction

Lecture notes in computer science

DOI

2026

MCAF: Improving Mortality Risk Prediction Using Multimodal Learning with Balanced Pre-training and Correlation-Aware Fusion

Lecture notes in computer science

DOI

2026

Multi-scale cross-attention integrates dynamic and static features for protein–RNA prediction

Pattern Recognition

DOI

2026

Cardinality is Not Enough: Super Host Detection via Segmented Cardinality Estimation

ACM Web Conference (WWW)

DOI

2026

Multiview Transformer-Based Hierarchical Fusion Model for Cell Type Identification

IEEE Journal of Biomedical and Health Informatics

DOI

2026

IMoKGNN: Dual-Stream Fusion of Generic and Task-Specific Language Model Features for Graph Neural Networks

ACM Transactions on Intelligent Systems and Technology

DOI

2026

Optimizing video streaming with a versatile online bitrate adjustment strategy over fluctuating networks

Computer Networks

DOI

2026

Dispersion-to-consolidation: Consolidating dispersed semantics via context-aware clustering for whole slide image analysis

Medical Image Analysis

DOI

2026

L asso : Accurate and Efficient Detection of Long-Lived Sparse Items in High-Speed Data Streams

ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD)

DOI

2026

Inter-instance similarity modeling for contrastive learning

Pattern Recognition

DOI

2026

USP-ddG: a unified structural paradigm with data efficacy and mixture-of-experts for predicting mutational effects on protein–protein interactions

Bioinformatics

DOI

2026

Vision-language model with siamese bilateral difference network and text-guided image feature enhancement for acute ischemic stroke outcome prediction on CT angiography

Information Fusion

DOI

2026

A causal inference framework for identifying essential genes to enhance drug synergy prediction

Bioinformatics

DOI

2026

Toward Fine-Grained Load Balancing With Congested-Flow Isolation in Lossless Datacenters

IEEE Transactions on Networking

DOI

2026

LA-mUNet: An Efficient Hybrid CNN-Mamba Network with Lesion Attention for 3D Brain Tumor MRI Segmentation

Lecture notes in computer science

DOI

2026

Chameleon: Enabling Friendly Coexistence of Learning-Based Congestion Controls Across Different User Preferences

IEEE Transactions on Mobile Computing

DOI

2025

以产业化为导向的机器学习课程交叉应用案例库建设

《计算机教育》

2025

结合机器学习和强化学习的润滑油分子集生成方法

《石油学报(石油加工)》

2025

Identifying DNA methylation types and methylated base positions from bacteria using nanopore sequencing with multi-scale neural network

Bioinform.

DOI

2025

LRMD: Reference-Free Misassembly Detection Based on Multiple Features from Long-Read Alignments

bioRxiv

DOI

2025

NanoFilter: enhancing phasing performance by utilizing highly consistent INDELs and SNVs in nanopore sequencing

Bioinform.

DOI

2025

panHiTE: A comprehensive and accurate pipeline for TE detection in large-scale population genomes

Plant Communications

DOI

2025

Toward QoE-Fairness for Video Streaming Over Heterogeneous Networks: An Innovative Bandwidth Allocation Mechanism

IEEE Transactions on Networking

DOI

2025

Edge-Aware Transformer with Shared Axis Feature Alignment and Adaptive Self-Attention for Glioma Grading

Engineering Applications of Artificial Intelligence

DOI

2025

SIM: Accelerating Distributed DNN Training by Exploring Gradient Similarity

IEEE Transactions on Networking

DOI

2025

Parameterized algorithms for the spanning forest isomorphism and containment on tree

Theoretical Computer Science

DOI

2025

Treasure Hunting: Embodied Contrastive Learning-Enhanced Coarse-to-Fine Object Seeking With Explorer and Discriminator Cooperation

IEEE Transactions on Neural Networks and Learning Systems

DOI

2025

MMProtRepPPI: A Multimodal Protein Representation for Predicting Protein–Protein Interactions Using Sequence and Structure

IEEE Transactions on Molecular Biological and Multi-Scale Communications

DOI

2025

ChromNet: A Multi‐Task Learning Framework for Cross‐Cell Type Prediction of 3D Chromatin Interactions Using Epigenetic Signals

Advanced Science

DOI

2025

Perspective from a Higher Dimension: Can 3D Geometric Priors Help Visual Floorplan Localization?

ACM International Conference on Multimedia (ACM MM)

DOI

2025

Methylation reference datasets from quartet DNA materials for benchmarking epigenome sequencing

Nature Communications

DOI

2025

Multiple object stitching for unsupervised representation learning

Pattern Recognition

DOI

2025

Customized SAM-Med3D With Multi-View Representation Fusion and Age-Grade Stratified Loss for Glioma Survival Risk Prediction

IEEE Journal of Biomedical and Health Informatics

DOI

2025

VisNet: A Human Visual System Inspired Lightweight Dual-Path Network for Medical Images Denoising

Lecture notes in computer science

DOI

2025

Bipartite Patient-Modality Graph Learning with Event-Conditional Modelling of Censoring for Cancer Survival Prediction

Lecture notes in computer science

DOI

2025

Parameterized Approximation Algorithm for Doubly Constrained Fair Clustering

International Joint Conference on Artificial Intelligence

DOI

2025

diPaRIS: Dynamic and Interpretable Protein‐RNA Interactions Prediction With U‐Shaped Network and Novel Structure Encoding

Advanced Science

DOI

2025

LRTM: Left-Right Transition Matrices for Molecular Association Prediction

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2025

Predict MiRNA-Disease Associations Using a Variant of Deep Forest Model and Improving Feature Vectors by Graph Convolutional Network

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2025

SwitchTop- k : Scaling Top- k Compression on Programmable Switches

ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD)

DOI

2025

EMF: Enhancing Mortality Risk Prediction via Evidential Multimodal Fusion

Lecture notes in computer science

DOI

2025

SGMDTI: A Unified Framework for Drug-Target Interaction Prediction by Semantic-Guided Meta-path Method

Lecture notes in computer science

DOI

2025

SDMFF: Spatial-Temporal Dual-Pathway Network with Multi-scale Feature Fusion for Parkinson’s Disease Diagnosis

Lecture notes in computer science

DOI

2025

HCM-Net: Hybrid CNN and Mamba Network with Multi-scale Awareness Feature Fusion for Lung Cancer Pathological Complete Response Prediction

Lecture notes in computer science

DOI

2025

Automatic Dual Threshold Tuning for Switch Buffer Sharing in Datacenter Networking

IEEE Transactions on Networking

DOI

2025

MRLF-DDI: A Multi-View Representation Learning Framework for Drug-Drug Interaction Event Prediction

IEEE Journal of Biomedical and Health Informatics

DOI

2025

Effectively Integrating CNN and Low-Complexity Transformer for Lung Cancer Tumor Prediction After Neoadjuvant Chemoimmunotherapy

Big Data Mining and Analytics

DOI

2025

ColdstartCPI: Induced-fit theory-guided DTI predictive model with improved generalization performance

Nature Communications

DOI

2025

MiRNA-Disease Association Prediction Based on Stacked Autoencoders and Variant Triplet Networks

Journal of Computer Science and Technology

DOI

2025

Progress-Aware Transmission Protocol for Efficient In-Network Aggregation in Distributed Machine Learning

IEEE Transactions on Networking

DOI

2025

Enhancing Antimicrobial Peptide Function Prediction via Knowledge Transfer on Protein Language Models

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2025

Minimum sum vertex cover: Difficulty of ordering

Theoretical Computer Science

DOI

2025

MADSP: predicting anti-cancer drug synergy through multi-source integration and attention-based representation learning

Bioinformatics

DOI

2025

Hybrid region and population hypergraph neural network for mild cognitive impairment detection

Pattern Recognition

DOI

2025

Knowledge-Driven Graph Representation Learning for Myocardial Infarction Localization

IEEE Journal of Biomedical and Health Informatics

DOI

2025

A deep learning-based method for predicting the frequency classes of drug side effects based on multi-source similarity fusion

Bioinformatics

DOI

2025

Towards Protein Functions Prediction: An Inclusive Literature Review of Artificial Intelligent Techniques and Future Research Guidelines

International Journal of Computer Science and Mobile Computing

DOI

2025

Multimodal Representation Learning Based on Personalized Graph-Based Fusion for Mortality Prediction Using Electronic Medical Records

Big Data Mining and Analytics

DOI

2025

Teaching to Fish Rather Than Giving a Fish: The Concentrator Method of Teaching Classic Congestion Control With Learning-Based module

IEEE Transactions on Mobile Computing

DOI

2025

FedComDist: Towards Effective Personalized Federated Learning for Patient Outcome Prediction Using Multi-Center Electronic Medical Records

IEEE Journal of Biomedical and Health Informatics

DOI

2025

Rodent Arena Multi-View Monitor (RAMM): A Camera Synchronized Photographic Control System for Multi-View Rodent Monitoring

Tsinghua Science & Technology

DOI

2025

CATH-ddG: towards robust mutation effect prediction on protein–protein interactions out of CATH homologous superfamily

Bioinformatics

DOI

2025

Proactive Transport With High Link Utilization Using Opportunistic Packets in Cloud Data Centers

IEEE Transactions on Mobile Computing

DOI

2025

C2F-TP: A Coarse-to-Fine Denoising Framework for Uncertainty-Aware Trajectory Prediction

Proceedings of the AAAI Conference on Artificial Intelligence

DOI

2025

Fully-Scalable Massively Parallel Algorithm for k-center with Outliers

Proceedings of the AAAI Conference on Artificial Intelligence

DOI

2025

Have Our Cake and Eat It: Augmentation Diversity and Semantic Consistency Balanced Graph Contrastive Learning

ACM Transactions on Knowledge Discovery from Data

DOI

2025

Multi-grained contrast for data-efficient unsupervised representation learning

Pattern Recognition

DOI

2025

Compressed Hierarchical Federated Learning for Edge-Level Imbalanced Wireless Networks

IEEE Transactions on Computational Social Systems

DOI

2025

Introspective Congestion Control for Consistent High Performance

DOI

2025

Multi‐view sparse attention network for glioma survival risk prediction

Medical Physics

DOI

2025

CA2CL: Cluster-Aware Adversarial Contrastive Learning for Pathological Image Analysis

IEEE Journal of Biomedical and Health Informatics

DOI

2025

LW-CTrans: A lightweight hybrid network of CNN and Transformer for 3D medical image segmentation

Medical Image Analysis

DOI

2025

MoKGNN: Boosting Graph Neural Networks via Mixture of Generic and Task-Specific Language Models

DOI

2025

LLMDTA: Improving Cold-Start Prediction in Drug-Target Affinity With Biological LLM

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2025

Large vessel occlusion identification network with vessel guidance and asymmetry learning on CT angiography of acute ischemic stroke patients

Medical Image Analysis

DOI

2025

MolFCL: predicting molecular properties through chemistry-guided contrastive and prompt learning

Bioinformatics

DOI

2025

Segmentation-Guided Deep Learning for Glioma Survival Risk Prediction with Multimodal MRI

Big Data Mining and Analytics

DOI

2025

Foundation models in bioinformatics

National Science Review

DOI

2025

MPEMDA: A multi-similarity integration approach with pre-completion and error correction for predicting microbe-drug associations

Methods

DOI

2025

FedKD-CPI: Combining the federated knowledge distillation technique to accomplish synergistic compound-protein interaction prediction

Methods

DOI

2025

Predicting thermodynamic stability of inorganic compounds using ensemble machine learning based on electron configuration

Nature Communications

DOI

2025

Variable-Sized Tiling and Rate Allocation for 360° Video Streaming

IEEE Transactions on Vehicular Technology

DOI

2025

Parameterized Algorithms for Planar 2-Layer Drawing by Vertex Splitting on a Given Subset

Lecture notes in computer science

DOI

2025

Minimum Sum Vertex Cover: Kernelization and Parameterized Algorithms

Lecture notes in computer science

DOI

2025

PISAD: reference-free intraspecies sample anomalies detection tool based on k-mer counting

GigaScience

DOI

2024

De novo diploid genome assembly using long noisy reads

bioRxiv

DOI

2024

RNA m6A detection using raw current signals and basecalling errors from Nanopore direct RNA sequencing reads

Bioinform.

DOI

2024

Phasing nanopore genome assembly by integrating heterozygous variations and Hi-C data

Bioinform.

DOI

2024

RLPS: Reinforcement Learning based Periodic Strategy for 40/100Gbps Energy Efficient Ethernet

IEEE International Symposium on Parallel and Distributed Processing with Applications (ISPA)

DOI

2024

SRCC: Sub-RTT Congestion Control for Lossless Datacenter Networks

IEEE Transactions on Industrial Informatics

DOI

2024

LIMO-GCN: a linear model-integrated graph convolutional network for predicting Alzheimer disease genes

Briefings in Bioinformatics

DOI

2024

Cox-Path: Biological Pathway-Informed Graph Neural Network for Cancer Survival Prediction

ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB)

DOI

2024

NeuralTE: an accurate approach for Transposable Element superfamily classification with multi-feature fusion

ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB)

DOI

2024

ESGC-MDA: Identifying miRNA-Disease Associations Using Enhanced Simple Graph Convolutional Networks

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2024

Embodied Contrastive Learning with Geometric Consistency and Behavioral Awareness for Object Navigation

ACM International Conference on Multimedia (ACM MM)

DOI

2024

FGITrans: Cross-City Transformer for Fine-grained Urban Flow Inference

ACM International Conference on Information and Knowledge Management (CIKM)

DOI

2024

A Knowledge Graph-Based Method for Drug-Drug Interaction Prediction With Contrastive Learning

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2024

BANDRP: a bilinear attention network for anti-cancer drug response prediction based on fingerprint and multi-omics.

PubMed

DOI

2024

Predicting Clinical Anticancer Drug Response of Patients by Using Domain Alignment and Prototypical Learning

IEEE Journal of Biomedical and Health Informatics

DOI

2024

Asymmetric patch sampling for contrastive learning

Pattern Recognition

DOI

2024

scCAD: Cluster decomposition-based anomaly detection for rare cell identification in single-cell expression data

Nature Communications

DOI

2024

LKLPDA: A Low-Rank Fast Kernel Learning Approach for Predicting piRNA-Disease Associations

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2024

PeFAD: A Parameter-Efficient Federated Framework for Time Series Anomaly Detection

ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD)

DOI

2024

VASE: Enhancing Adaptive Bitrate Selection for VBR-Encoded Audio and Video Content With Deep Reinforcement Learning

IEEE Transactions on Mobile Computing

DOI

2024

PTAS for Minimum Cost MultiCovering with Disks

SIAM Journal on Computing

DOI

2024

Straggler-Aware Gradient Aggregation for Large-Scale Distributed Deep Learning System

IEEE/ACM Transactions on Networking

DOI

2024

A2HTL: An Automated Hybrid Transformer-Based Learning for Predicting Survival of Esophageal Cancer Using CT Images

IEEE Transactions on NanoBioscience

DOI

2024

Achieving Efficient Scheduling based on Accurate Measurement of Small Flows in Data Center

Proceedings of the International Conference on Parallel Processing

DOI

2024

SaSDim:Self-Adaptive Noise Scaling Diffusion Model for Spatial Time Series Imputation

DOI

2024

Predicting pathological response in esophageal squamous cell carcinoma with longitudinal CT radiomics and disentangled representation learning: a multicenter retrospective cohort study

International Journal of Surgery

DOI

2024

FedMMR: Multi-Modal Federated Learning via Missing Modality Reconstruction

IEEE International Conference on Multimedia and Expo (ICME)

DOI

2024

HyperMatch: long-form text matching via hypergraph convolutional networks

Knowledge and Information Systems

DOI

2024

HiTE: a fast and accurate dynamic boundary adjustment approach for full-length transposable element detection and annotation

Nature Communications

DOI

2024

Bioinformatics and Biomedical Computing

Fundamental Research

DOI

2024

DDAffinity: predicting the changes in binding affinity of multiple point mutations using protein 3D structure

Bioinformatics

DOI

2024

Achieving QoE Fairness in Video Streaming over Heterogeneous Congestion Control Protocols

IEEE/ACM International Symposium on Quality of Service (IWQoS)

DOI

2024

Analysis and Improvement of PowerTCP

IEEE/ACM International Symposium on Quality of Service (IWQoS)

DOI

2024

TaLB: Tensor-aware Load Balancing for Distributed DNN Training Acceleration

IEEE/ACM International Symposium on Quality of Service (IWQoS)

DOI

2024

SGC: Similarity-Guided Gradient Compression for Distributed Deep Learning

IEEE/ACM International Symposium on Quality of Service (IWQoS)

DOI

2024

Socially Aware Object Goal Navigation With Heterogeneous Scene Representation Learning

IEEE Robotics and Automation Letters

DOI

2024

RGCNPPIS: A Residual Graph Convolutional Network for Protein-Protein Interaction Site Prediction

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2024

Tile-size aware bitrate allocation for adaptive 360$$^{\circ }$$ video streaming

Multimedia Tools and Applications

DOI

2024

Optimizing Video Streaming in Dynamic Networks: An Intelligent Adaptive Bitrate Solution Considering Scene Intricacy and Data Budget

IEEE Transactions on Mobile Computing

DOI

2024

Prediction of Protein–Protein Interactions Based on Integrating Deep Learning and Feature Fusion

International Journal of Molecular Sciences

DOI

2024

DLP: Duplex Link Prediction via Subspace Segmentation for Predicting Drug-MiRNA Associations

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2024

Gsyn: Reducing Staleness and Communication Waiting via Grouping-based Synchronization for Distributed Deep Learning

DOI

2024

HSPNav: Hierarchical Scene Prior Learning for Visual Semantic Navigation Towards Real Settings

Proceedings - IEEE International Conference on Robotics and Automation/Proceedings

DOI

2024

KeyEE: Enhancing Low-Resource Generative Event Extraction with Auxiliary Keyword Sub-Prompt

Big Data Mining and Analytics

DOI

2024

Deep Imputation Bi-Stochastic Graph Regularized Matrix Factorization for Clustering Single-Cell RNA-Sequencing Data

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2024

Identifying new cancer genes based on the integration of annotated gene sets via hypergraph neural networks

Bioinformatics

DOI

2024

DTKGIN: Predicting drug-target interactions based on knowledge graph and intent graph

Methods

DOI

2024

MA‐PEP : A novel anticancer peptide prediction framework with multimodal feature fusion based on attention mechanism

Protein Science

DOI

2024

TripHLApan: predicting HLA molecules binding peptides based on triple coding matrix and transfer learning

Briefings in Bioinformatics

DOI

2024

GSScore: a novel Graphormer-based shell-like scoring method for protein–ligand docking

Briefings in Bioinformatics

DOI

2024

SEC: More Accurate Clustering Algorithm via Structural Entropy

Proceedings of the AAAI Conference on Artificial Intelligence

DOI

2024

GraphPath: a graph attention model for molecular stratification with interpretability based on the pathway–pathway interaction network

Bioinformatics

DOI

2024

Chinese EMR Named Entity Recognition Using Fused Label Relations Based on Machine Reading Comprehension Framework

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2024

Boundary-Aware Dual Biaffine Model for Sequential Sentence Classification in Biomedical Documents

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2024

Multi-Network Graph Contrastive Learning for Cancer Driver Gene Identification

IEEE Transactions on Network Science and Engineering

DOI

2024

On scheduling multiple parallel two-stage flowshops with Johnson’s Rule

Journal of Combinatorial Optimization

DOI

2024

Cyclic Matrix Coding to Mitigate ACK Blocking of MPTCP in Data Center Networks

IEEE Transactions on Cloud Computing

DOI

2024

Hybrid CNN-Transformer Network With Circular Feature Interaction for Acute Ischemic Stroke Lesion Segmentation on Non-Contrast CT Scans

IEEE Transactions on Medical Imaging

DOI

2024

AGImpute: imputation of scRNA-seq data based on a hybrid GAN with dropouts identification

Bioinformatics

DOI

2024

Achieving Low Latency for Multipath Transmission in RDMA Based Data Center Network

IEEE Transactions on Cloud Computing

DOI

2024

KT-AMP: Enhancing Antimicrobial Peptide Functions Prediction Through Knowledge Transfer on Protein Language Model

Lecture notes in computer science

DOI

2024

Diagnosis of Parkinson's Disease Based on Hybrid Fusion Approach of Offline Handwriting Images

IEEE Signal Processing Letters

DOI

2024

LLMDTA: Improving Cold-Start Prediction in Drug-Target Affinity with Biological LLM

Lecture notes in computer science

DOI

2024

Combining CNN and Self-attention-Free Transformer Using Local-Global Attention Fusion for Lung Cancer Segmentation

Lecture notes in computer science

DOI

2024

MARE: Multi-Aspect Rationale Extractor on Unsupervised Rationale Extraction

Conference on Empirical Methods in Natural Language Processing (EMNLP)

DOI

2024

Residual Spatio-Temporal Attention Based Prototypical Network for Rare Arrhythmia Classification

Lecture notes in computer science

DOI

2024

Hybrid CNN and Low-Complexity Transformer Network with Attention-Based Feature Fusion for Predicting Lung Cancer Tumor After Neoadjuvant Chemoimmunotherapy

Lecture notes in computer science

DOI

2024

CAST: An Intricate-Scene Aware Adaptive Bitrate Approach for Video Streaming via Parallel Training

Lecture notes in computer science

DOI

2024

ViT-Based Multi-task Learning Method for Pulmonary Embolism Detection, Localization, and Type Classification

Lecture notes in computer science

DOI

2024

Improved Approximation Algorithm for the Distributed Lower-Bounded k-Center Problem

Lecture notes in computer science

DOI

2024

FedKD-DTI: Drug-Target Interaction Prediction Based on Federated Knowledge Distillation

Lecture notes in computer science

DOI

2024

MEMDA: A Multi-similarity Integration Pre-completion Algorithm with Error Correction for Predicting Microbe-Drug Associations

Lecture notes in computer science

DOI

2023

基于直接拥塞通告的数据中心无损网络传输控制机制

《电子学报》

2023

Taming the Aggressiveness of Heterogeneous TCP Traffic in Data Center Networks

IEEE/ACM Transactions on Networking

DOI

2023

PDLB: Path Diversity-aware Load Balancing with adaptive granularity in data center networks

Journal of Cloud Computing Advances Systems and Applications

DOI

2023

A Fully Automated CT-Guided Learning for Survival Prediction of Esophageal Cancer

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2023

M3CI-Net: Multi-Modal MRI-Based Characteristics Inspired Network for IDH Genotyping

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2023

Improving Medical Image Denoising via a Lightweight Plug-and-play Module

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2023

Personalized federated adaptive regularization for heterogeneous medical image classification: COVID-19 CT results

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2023

Domain-specific Knowledge Guided Self-supervised Learning for Pathological Image Segmentation

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2023

A learning-based approach for video streaming over fluctuating networks with limited playback buffers

Computer Communications

DOI

2023

SSLpheno: a self-supervised learning approach for gene–phenotype association prediction using protein–protein interactions and gene ontology data

Bioinformatics

DOI

2023

SemNav-HRO: A target-driven semantic navigation strategy with human–robot–object ternary fusion

Engineering Applications of Artificial Intelligence

DOI

2023

DiffUFlow: Robust Fine-grained Urban Flow Inference with Denoising Diffusion Model

ACM International Conference on Information and Knowledge Management (CIKM)

DOI

2023

Advances and challenges in Bioinformatics and Biomedical Engineering: IWBBIO 2020

BMC Bioinformatics

DOI

2023

Think Holistically, Act Down-to-Earth: A Semantic Navigation Strategy With Continuous Environmental Representation and Multi-Step Forward Planning

IEEE Transactions on Circuits and Systems for Video Technology

DOI

2023

PA-ATP: Progress-Aware Transmission Protocol for In-Network Aggregation

Proceedings/Proceedings - International Conference on Network Protocols

DOI

2023

Traffic‐aware rate control for mix‐flow in datacenter

IET Communications

DOI

2023

The Impact of Computational Drug Discovery on Society

IEEE Transactions on Computational Social Systems

DOI

2023

Scheduling Coflows by Online Identification in Data Center Network

IEEE Transactions on Emerging Topics in Computing

DOI

2023

Parameterized Algorithms for Fixed-Order Book Drawing with Few Crossings Per Edge

International Journal of Foundations of Computer Science

DOI

2023

Consistent Low Latency Scheduler for Distributed Key-Value Stores

IEEE Transactions on Parallel and Distributed Systems

DOI

2023

ITRPCA: a new model for computational drug repositioning based on improved tensor robust principal component analysis

Frontiers in Genetics

DOI

2023

SCN-MLTPP: A Multi-Label Classifier for Predicting Therapeutic Properties of Peptides Using the Stacked Capsule Network

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2023

IsoFrog: a reversible jump Markov Chain Monte Carlo feature selection-based method for predicting isoform functions

Bioinformatics

DOI

2023

Identifying the serious clinical outcomes of adverse reactions to drugs by a multi-task deep learning framework

Communications Biology

DOI

2023

MSDRP: a deep learning model based on multisource data for predicting drug response

Bioinformatics

DOI

2023

BEA-Net: Body and Edge Aware Network With Multi-Scale Short-Term Concatenation for Medical Image Segmentation

IEEE Journal of Biomedical and Health Informatics

DOI

2023

Corrigendum to “A secure model against mobile sink replication attacks in unattended sensor networks” COMPNW, Volume 221, February 2023, 109529

Computer Networks

DOI

2023

Multigranularity Label Prediction Model for Automatic International Classification of Diseases Coding in Clinical Text

Journal of Computational Biology

DOI

2023

DNA 5-methylcytosine detection and methylation phasing using PacBio circular consensus sequencing

Nature Communications

DOI

2023

Improvement of Copa: Behaviors and Friendliness of Delay-Based Congestion Control Algorithm

IEEE/ACM Transactions on Networking

DOI

2023

Practical periodic strategy for 40/100 Gbps Energy Efficient Ethernet

Computer Networks

DOI

2023

LGTRL-DE: Local and Global Temporal Representation Learning with Demographic Embedding for in-hospital mortality prediction

Journal of Biomedical Informatics

DOI

2023

Modeling global distribution for federated learning with label distribution skew

Pattern Recognition

DOI

2023

CellBRF: a feature selection method for single-cell clustering using cell balance and random forest

Bioinformatics

DOI

2023

Achieving QoE Fairness in Bitrate Allocation of 360° Video Streaming

IEEE Transactions on Multimedia

DOI

2023

Exploring Contextual Relationships for Cervical Abnormal Cell Detection

IEEE Journal of Biomedical and Health Informatics

DOI

2023

ViTScore: A Novel Three-Dimensional Vision Transformer Method for Accurate Prediction of Protein–Ligand Docking Poses

IEEE Transactions on NanoBioscience

DOI

2023

A2TP: Aggregator-aware In-network Aggregation for Multi-tenant Learning

DOI

2023

STExplorer: A Hierarchical Autonomous Exploration Strategy with Spatio-temporal Awareness for Aerial Robots

ACM Transactions on Intelligent Systems and Technology

DOI

2023

DFHiC: a dilated full convolution model to enhance the resolution of Hi-C data

Bioinformatics

DOI

2023

RBS-Net: Hippocampus segmentation using multi-layer feature learning with the region, boundary and structure loss

Computers in Biology and Medicine

DOI

2023

Improved kernels for triangle packing in tournaments

Science China Information Sciences

DOI

2023

Learning Audio and Video Bitrate Selection Strategies via Explicit Requirements

IEEE Transactions on Mobile Computing

DOI

2023

Task Migration and Resource Allocation Scheme in IoV With Roadside Unit

IEEE Transactions on Network and Service Management

DOI

2023

EDDSN-MRT: multiple rodent tracking based on ear detection and dual siamese network for rodent social behavior analysis

BMC Neuroscience

DOI

2023

Joint multi-user DNN partitioning and task offloading in mobile edge computing

Ad Hoc Networks

DOI

2023

Intelligent Electrocardiogram Analysis in Medicine: Data, Methods, and Applications

Chinese Medical Sciences Journal

DOI

2023

Benchmarking of computational methods for predicting circRNA-disease associations

Briefings in Bioinformatics

DOI

2023

CDA: A Contrastive Data Augmentation Method for Alzheimer’s Disease Detection

DOI

2023

MPFNet: ECG Arrhythmias Classification Based on Multi-perspective Feature Fusion

Lecture notes in computer science

DOI

2023

Identifying miRNA-Disease Associations Based on Simple Graph Convolution with DropMessage and Jumping Knowledge

Lecture notes in computer science

DOI

2023

Reinforcement-Learning Based Preload Strategy for Short Video

Lecture notes in computer science

DOI

2023

The Fair k-Center with Outliers Problem: FPT and Polynomial Approximations

Lecture notes in computer science

DOI

2023

Applying Johnson’s Rule in Scheduling Multiple Parallel Two-Stage Flowshops

Lecture notes in computer science

DOI

2022

Semi-automated assembly of high-quality diploid human reference genomes

Nature

DOI

2022

NanoSNP: a progressive and haplotype-aware SNP caller on low-coverage nanopore sequencing data

Bioinform.

DOI

2022

Fec: a fast error correction method based on two-rounds overlapping and caching

Bioinform.

DOI

2022

Energy-Aware 3D-Deployment of UAV for IoV With Highway Interchange

IEEE Transactions on Communications

DOI

2022

Inferring disease-associated circRNAs by multi-source aggregation based on heterogeneous graph neural network

Briefings in Bioinformatics

DOI

2022

CRMSS: predicting circRNA-RBP binding sites based on multi-scale characterizing sequence and structure features

Briefings in Bioinformatics

DOI

2022

Attention-based Memory Fusion Network for Clinical Outcome Prediction using Electronic Medical Records

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2022

An integration of deep learning with feature fusion for protein-protein interaction prediction

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2022

Predicting of microbe-drug associations via a pre-completion-based label propagation algorithm

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2022

ViTRMSE: a three-dimensional RMSE scoring method for protein-ligand docking models based on Vision Transformer

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2022

ASNet: An Adversarial Sparse Network for Multi-task Biomedical Named Entity Recognition

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2022

Integrating Multi-scale Feature Representation and Ensemble Learning for Schizophrenia Diagnosis

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2022

MVSF: Multi-View Signature Fusion Network for Noninvasively Predicting Ki67 Status

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2022

GIFDTI: Prediction of Drug-Target Interactions Based on Global Molecular and Intermolecular Interaction Representation Learning

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2022

Improved approximation algorithms for solving the squared metric k-facility location problem

Theoretical Computer Science

DOI

2022

A spatiotemporal correlation deep learning network for brain penumbra disease

Neurocomputing

DOI

2022

Accelerated Information Dissemination for Replica Selection in Distributed Key-Value Store Systems

IEEE Transactions on Parallel and Distributed Systems

DOI

2022

MMGK: Multimodality Multiview Graph Representations and Knowledge Embedding for Mild Cognitive Impairment Diagnosis

IEEE Transactions on Computational Social Systems

DOI

2022

A Receiver-Driven Transport Protocol With High Link Utilization Using Anti-ECN Marking in Data Center Networks

IEEE Transactions on Network and Service Management

DOI

2022

AMS: Adaptive Multiget Scheduling Algorithm for Distributed Key-Value Stores

IEEE Transactions on Cloud Computing

DOI

2022

RF-Siamese: Approaching Accurate RFID Gesture Recognition With One Sample

IEEE Transactions on Mobile Computing

DOI

2022

Hippo-Yap Signaling Maintains Sinoatrial Node Homeostasis

Circulation

DOI

2022

Yap and Taz promote osteogenesis and prevent chondrogenesis in neural crest cells in vitro and in vivo

Science Signaling

DOI

2022

DeepBLI: A Transferable Multichannel Model for Detecting β-Lactamase-Inhibitor Interaction

Journal of Chemical Information and Modeling

DOI

2022

Generative-Free Urban Flow Imputation

Proceedings of the ... ACM International Conference on Information & Knowledge Management

DOI

2022

MCA-net: A multi-task channel attention network for Myocardial infarction detection and location using 12-lead ECGs

Computers in Biology and Medicine

DOI

2022

Asymmetry-Aware Load Balancing With Adaptive Switching Granularity in Data Center

IEEE/ACM Transactions on Networking

DOI

2022

Erratum to: Incremental algorithms for the maximum internal spanning tree problem

Science China Information Sciences

DOI

2022

HPLB: High precision load balancing based on in-band network telemetry in data center networks

Peer-to-Peer Networking and Applications

DOI

2022

HSP: Hybrid Synchronous Parallelism for Fast Distributed Deep Learning

Proceedings of the International Conference on Parallel Processing

DOI

2022

Achieving Fast Convergence and High Efficiency using Differential Explicit Feedback in Data Center

IEEE Transactions on Cloud Computing

DOI

2022

ChainSketch: An Efficient and Accurate Sketch for Heavy Flow Detection

IEEE/ACM Transactions on Networking

DOI

2022

Predicting cancer drug response using parallel heterogeneous graph convolutional networks with neighborhood interactions

Bioinformatics

DOI

2022

NASMDR: a framework for miRNA-drug resistance prediction using efficient neural architecture search and graph isomorphism networks

Briefings in Bioinformatics

DOI

2022

HA-ResNet: Residual Neural Network With Hidden Attention for ECG Arrhythmia Detection Using Two-Dimensional Signal

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2022

RAV: Learning-Based Adaptive Streaming to Coordinate the Audio and Video Bitrate Selections

IEEE Transactions on Multimedia

DOI

2022

Dimensionality Reduction of Single-Cell RNA Sequencing Data by Combining Entropy and Denoising AutoEncoder

Journal of Computational Biology

DOI

2022

IIFDTI: predicting drug–target interactions through interactive and independent features based on attention mechanism

Bioinformatics

DOI

2022

Small Candidate Set for Translational Pattern Search

Algorithmica

DOI

2022

FLS: A New Local Search Algorithm for K-means with Smaller Search Space

International Joint Conference on Artificial Intelligence

DOI

2022

DARC: Deep adaptive regularized clustering for histopathological image classification

Medical Image Analysis

DOI

2022

ADmeth: A Manually Curated Database for the Differential Methylation in Alzheimer's Disease

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2022

Achieving Per-Flow Fairness and High Utilization With Limited Priority Queues in Data Center

IEEE/ACM Transactions on Networking

DOI

2022

Copa+: Analysis and Improvement of the Delay-based Congestion Control Algorithm Copa

DOI

2022

Yap and Taz promote osteogenesis in neural crest cells by preventing chondrogenesis

The FASEB Journal

DOI

2022

DWT-CV: Dense weight transfer-based cross validation strategy for model selection in biomedical data analysis

Future Generation Computer Systems

DOI

2022

AttentionDTA: Drug–Target Binding Affinity Prediction by Sequence-Based Deep Learning With Attention Mechanism

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2022

HDIContact: a novel predictor of residue–residue contacts on hetero-dimer interfaces via sequential information and transfer learning strategy

Briefings in Bioinformatics

DOI

2022

MLDRL: Multi-loss disentangled representation learning for predicting esophageal cancer response to neoadjuvant chemoradiotherapy using longitudinal CT images

Medical Image Analysis

DOI

2022

Correction to: COVID-19 mortality prediction in the intensive care unit with deep learning based on longitudinal chest X-rays and clinical data

European Radiology

DOI

2022

Chinese clinical named entity recognition via multi-head self-attention based BiLSTM-CRF

Artificial Intelligence in Medicine

DOI

2022

An approximation algorithm for lower-bounded k-median with constant factor

Science China Information Sciences

DOI

2022

A divide-and-conquer approach for reconstruction of {C≥5}-free graphs via betweenness queries

Theoretical Computer Science

DOI

2022

Opportunistic Transmission for Video Streaming over Wild Internet

ACM Transactions on Multimedia Computing Communications and Applications

DOI

2022

TRScore: a 3D RepVGG-based scoring method for ranking protein docking models

Bioinformatics

DOI

2022

COVID-19 mortality prediction in the intensive care unit with deep learning based on longitudinal chest X-rays and clinical data

European Radiology

DOI

2022

A Refined Branching Algorithm for the Maximum Satisfiability Problem

Algorithmica

DOI

2022

PDMDA: predicting deep-level miRNA–disease associations with graph neural networks and sequence features

Bioinformatics

DOI

2022

Drug repositioning based on multi-view learning with matrix completion

Briefings in Bioinformatics

DOI

2022

An Apprenticeship Learning Approach for Adaptive Video Streaming Based on Chunk Quality and User Preference

IEEE Transactions on Multimedia

DOI

2022

IsoCell: An Approach to Enhance Single Cell Clustering by Integrating Isoform-Level Expression Through Orthogonal Projection

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2022

ECN-based shared bottleneck detection for multi-path TCP

Computer Communications

DOI

2022

End-to-End Congestion Control to Provide Deterministic Latency Over Internet

IEEE Communications Letters

DOI

2022

AlzCode: a platform for multiview analysis of genes related to Alzheimer’s disease

Bioinformatics

DOI

2022

On Some Capacity-Achieving Fractional Repetition Codes

IEEE Transactions on Vehicular Technology

DOI

2022

Achieving fast page load for websites across multiple domains

Transactions on Emerging Telecommunications Technologies

DOI

2022

Real-time and Accurate Gesture Recognition with Commercial RFID Devices

IEEE Transactions on Mobile Computing

DOI

2022

HearMe: Accurate and Real-time Lip Reading based on Commercial RFID Devices

IEEE Transactions on Mobile Computing

DOI

2022

Fusing Label Relations for Chinese EMR Named Entity Recognition with Machine Reading Comprehension

Lecture notes in computer science

DOI

2022

Automatic ICD Coding Based on Multi-granularity Feature Fusion

Lecture notes in computer science

DOI

2021

“人工智能+X”背景下生物信息学方向科技创新人才培养体系探索与实践

《工业和信息化教育》

2021

“人工智能+X”研究生创新人才培养模式探索与实践

《工业和信息化教育》

2021

iAES:面向网络安全博客的IOC自动抽取方法

《计算机学报》

2021

一种高效低能耗移动数据采集与无线充电策略

《软件学报》

DOI

2021

“人工智能+X”交叉学科科研创新能力培养模式探索

《工业和信息化教育》

2021

Genome-wide detection of cytosine methylations in plant from Nanopore data using deep learning

Nature Communications

DOI

2021

Efficient assembly of nanopore reads via highly accurate and intact error correction

Nature Communications

DOI

2021

NeuralPolish: a novel Nanopore polishing method based on alignment matrix construction and orthogonal Bi-GRU Networks

Bioinform.

DOI

2021

Weakly Supervised Deep Nuclei Segmentation With Sparsely Annotated Bounding Boxes for DNA Image Cytometry

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2021

REN: Receiver-Driven Congestion Control Using Explicit Notification for Data Center

IEEE Transactions on Cloud Computing

DOI

2021

VAMP: A Predictive Approach to Audio/Video Bitrate Adaptation Over Wireless Networks

IEEE Wireless Communications Letters

DOI

2021

ARSC-Net: Adventitious Respiratory Sound Classification Network Using Parallel Paths with Channel-Spatial Attention

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2021

MAIN: Multimodal Attention-based Fusion Networks for Diagnosis Prediction

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2021

MTFIL-Net: automated Alzheimer’s disease detection and MMSE score prediction based on feature interactive learning

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2021

BEA-SegNet: Body and Edge Aware Network for Medical Image Segmentation

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2021

EFCA: An Extended Formal Concept Analysis Method for Aspect Extraction in Healthcare Informatics

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2021

GraphIsoFun: a graph neural network based approach for splice isoform function prediction

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2021

SCOTCluster: Deep Clustering with Optimal Transport for Large-scale Single-cell RNA-seq Data

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2021

Identifying virus-receptor interactions through matrix completion with similarity fusion

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2021

TissueNexus: a database of human tissue functional gene networks built with a large compendium of curated RNA-seq data

Nucleic Acids Research

DOI

2021

An integrated brain-specific network identifies genes associated with neuropathologic and clinical traits of Alzheimer’s disease

Briefings in Bioinformatics

DOI

2021

MTGNN: Multi-Task Graph Neural Network based few-shot learning for disease similarity measurement

Methods

DOI

2021

msRepDB: a comprehensive repetitive sequence database of over 80 000 species

Nucleic Acids Research

DOI

2021

Metrics for evaluating differentially methylated region sets predicted from BS-seq data

Briefings in Bioinformatics

DOI

2021

SYNBIP: synthetic binding proteins for research, diagnosis and therapy

Nucleic Acids Research

DOI

2021

HyperAttentionDTI: improving drug–protein interaction prediction by sequence-based deep learning with attention mechanism

Bioinformatics

DOI

2021

Time-Aware Multi-Type Data Fusion Representation Learning Framework for Risk Prediction of Cardiovascular Diseases

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2021

A similarity-based deep learning approach for determining the frequencies of drug side effects

Briefings in Bioinformatics

DOI

2021

IGNSCDA: Predicting CircRNA-Disease Associations Based on Improved Graph Convolutional Network and Negative Sampling

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2021

Improved Fixed-Parameter Algorithm for the Tree Containment Problem on Unrooted Phylogenetic Network

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2021

BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer

Briefings in Bioinformatics

DOI

2021

Time complexity analysis of evolutionary algorithms for 2-hop (1,2)-minimum spanning tree problem

Theoretical Computer Science

DOI

2021

Automated Diagnosis of COVID-19 Using Deep Supervised Autoencoder With Multi-View Features From CT Images

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2021

End vertices of graph searches on bipartite graphs

Information Processing Letters

DOI

2021

MAGE: Automatic diagnosis of autism spectrum disorders using multi-atlas graph convolutional networks and ensemble learning

Neurocomputing

DOI

2021

GANLDA: Graph attention network for lncRNA-disease associations prediction

Neurocomputing

DOI

2021

Multimodal Disentangled Variational Autoencoder With Game Theoretic Interpretability for Glioma Grading

IEEE Journal of Biomedical and Health Informatics

DOI

2021

Artificial intelligence for prediction of COVID-19 progression using CT imaging and clinical data

European Radiology

DOI

2021

Fixed-parameter tractability for the Tree Assembly problem

Theoretical Computer Science

DOI

2021

A sensitive repeat identification framework based on short and long reads

Nucleic Acids Research

DOI

2021

RNPredATC: A Deep Residual Learning-Based Model With Applications to the Prediction of Drug-ATC Code Association

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2021

A novel graph attention model for predicting frequencies of drug–side effects from multi-view data

Briefings in Bioinformatics

DOI

2021

Improved approximation for prize-collecting red-blue median

Theoretical Computer Science

DOI

2021

Predicting the Survival of Cancer Patients With Multimodal Graph Neural Network

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2021

Prediction of Egfr Mutation Status in Lung Adenocarcinoma Using Multi-Source Feature Representations

IEEE International Conference on Acoustics Speech and Signal Processing

DOI

2021

Drug-Target Interaction Prediction Using Multi-Head Self-Attention and Graph Attention Network

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2021

On parameterized algorithms for fixed-order book thickness with respect to the pathwidth of the vertex ordering

Theoretical Computer Science

DOI

2021

A local search algorithm for k-means with outliers

Neurocomputing

DOI

2021

Incremental algorithms for the maximum internal spanning tree problem

Science China Information Sciences

DOI

2021

Collaborative Matrix Factorization with Soft Regularization for Drug-Target Interaction Prediction

Journal of Computer Science and Technology

DOI

2021

An approximation algorithm for k-median with priorities

Science China Information Sciences

DOI

2021

Biomedical Data and Deep Learning Computational Models for Predicting Compound-Protein Relations

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2021

Prognostication of patients with COVID-19 using artificial intelligence based on chest x-rays and clinical data: a retrospective study

The Lancet Digital Health

DOI

2021

A convolutional neural network and graph convolutional network-based method for predicting the classification of anatomical therapeutic chemicals

Bioinformatics

DOI

2021

SSRE: Cell Type Detection Based on Sparse Subspace Representation and Similarity Enhancement

Genomics Proteomics & Bioinformatics

DOI

2021

Parallel computing for genome sequence processing

Briefings in Bioinformatics

DOI

2021

An improved FPT algorithm for the flip distance problem

Information and Computation

DOI

2021

In Silico Prediction of New Mutations That Can Improve the Binding Abilities Between 2019-nCoV Coronavirus and Human ACE2

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2021

Prediction of Microbe-drug Associations Based on Chemical Structures and the KATZ Measure

Current Bioinformatics

DOI

2021

MultiNanopolish: refined grouping method for reducing redundant calculations in Nanopolish

Bioinformatics

DOI

2021

MDAPlatform: A Component-based Platform for Constructing and Assessing miRNA-disease Association Prediction Methods

Current Bioinformatics

DOI

2021

De Novo Prediction of Drug–Target Interactions Using Laplacian Regularized Schatten p -Norm Minimization

Journal of Computational Biology

DOI

2021

An Ensemble Hybrid Feature Selection Method for Neuropsychiatric Disorder Classification

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2021

A Novel Multi-Ensemble Method for Identifying Essential Proteins

Journal of Computational Biology

DOI

2021

Reconstruction and verification of chordal graphs with a distance oracle

Theoretical Computer Science

DOI

2021

PTAS for Minimum Cost Multi-covering with Disks

Society for Industrial and Applied Mathematics eBooks

DOI

2021

Cycle Extendability of Hamiltonian Strongly Chordal Graphs

SIAM Journal on Discrete Mathematics

DOI

2021

ScDA: A Denoising AutoEncoder Based Dimensionality Reduction for Single-cell RNA-seq Data

Lecture notes in computer science

DOI

2021

ECG Arrhythmia Detection Based on Hidden Attention Residual Neural Network

Lecture notes in computer science

DOI

2020

基于深度学习的蘑菇图像分类研究

《软件工程》

DOI

2020

Fast and accurate assembly of Nanopore reads via progressive error correction and adaptive read selection

bioRxiv

DOI

2020

Local Adaptive U-net for Medical Image Segmentation

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2020

Joint Learning of Primary and Secondary Labels based on Multi-scale Representation for Alzheimer’s Disease Diagnosis

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2020

A novel approach based on deep residual learning to predict drug’s anatomical therapeutic chemical code

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2020

Multi-task Based Few-Shot Learning for Disease Similarity Measurement

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2020

Improving circRNA–disease association prediction by sequence and ontology representations with convolutional and recurrent neural networks

Bioinformatics

DOI

2020

Sc-GPE: A Graph Partitioning-Based Cluster Ensemble Method for Single-Cell

Frontiers in Genetics

DOI

2020

Heterogeneous graph inference with matrix completion for computational drug repositioning

Bioinformatics

DOI

2020

Key residues influencing binding affinities of 2019-nCoV with ACE2 in different species

Briefings in Bioinformatics

DOI

2020

SACall: A Neural Network Basecaller for Oxford Nanopore Sequencing Data Based on Self-Attention Mechanism

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2020

Computational drug repositioning based on multi-similarities bilinear matrix factorization

Briefings in Bioinformatics

DOI

2020

MMHGE: detecting mild cognitive impairment based on multi-atlas multi-view hybrid graph convolutional networks and ensemble learning

Cluster Computing

DOI

2020

Identification of early mild cognitive impairment using multi-modal data and graph convolutional networks

BMC Bioinformatics

DOI

2020

DeepFrag-k: a fragment-based deep learning approach for protein fold recognition

BMC Bioinformatics

DOI

2020

LDICDL: LncRNA-Disease Association Identification Based on Collaborative Deep Learning

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2020

Prediction of Glioma Grade Using Intratumoral and Peritumoral Radiomic Features From Multiparametric MRI Images

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2020

RepAHR: an improved approach for de novo repeat identification by assembly of the high-frequency reads

BMC Bioinformatics

DOI

2020

NIMCE: A Gene Regulatory Network Inference Approach Based on Multi Time Delays Causal Entropy

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2020

Drug–drug similarity measure and its applications

Briefings in Bioinformatics

DOI

2020

CLPred: a sequence-based protein crystallization predictor using BLSTM neural network

Bioinformatics

DOI

2020

Multi-Receptive-Field CNN for Semantic Segmentation of Medical Images

IEEE Journal of Biomedical and Health Informatics

DOI

2020

Identifying and ranking potential cancer drivers using representation learning on attributed network

Methods

DOI

2020

MGNN: A Multimodal Graph Neural Network for Predicting the Survival of Cancer Patients

International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR)

DOI

2020

Attention convolutional neural network for accurate segmentation and quantification of lesions in ischemic stroke disease

Medical Image Analysis

DOI

2020

AIMAFE: Autism spectrum disorder identification with multi-atlas deep feature representation and ensemble learning

Journal of Neuroscience Methods

DOI

2020

Improved ASD classification using dynamic functional connectivity and multi-task feature selection

Pattern Recognition Letters

DOI

2020

Feature and Nuclear Norm Minimization for Matrix Completion

IEEE Transactions on Knowledge and Data Engineering

DOI

2020

A survey on predicting microbe-disease associations: biological data and computational methods

Briefings in Bioinformatics

DOI

2020

Deep Matrix Factorization Improves Prediction of Human CircRNA-Disease Associations

IEEE Journal of Biomedical and Health Informatics

DOI

2020

A survey on U-shaped networks in medical image segmentations

Neurocomputing

DOI

2020

ClusterMine: A knowledge-integrated clustering approach based on expression profiles of gene sets

Journal of Bioinformatics and Computational Biology

DOI

2020

Similar Disease Prediction With Heterogeneous Disease Information Networks

IEEE Transactions on NanoBioscience

DOI

2020

A new approximation algorithm for contig-based genomic scaffold filling

Theoretical Computer Science

DOI

2020

An Effective Convolutional Neural Network for Classifying Red Blood Cells in Malaria Diseases

Interdisciplinary Sciences Computational Life Sciences

DOI

2020

Exploring the dynamics and interplay of human papillomavirus and cervical tumorigenesis by integrating biological data into a mathematical model

BMC Bioinformatics

DOI

2020

Predicting Drug-Drug Interactions Based on Integrated Similarity and Semi-Supervised Learning

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2020

miRTMC: A miRNA Target Prediction Method Based on Matrix Completion Algorithm

IEEE Journal of Biomedical and Health Informatics

DOI

2020

Predicting Human lncRNA-Disease Associations Based on Geometric Matrix Completion

IEEE Journal of Biomedical and Health Informatics

DOI

2020

DMFLDA: A Deep Learning Framework for Predicting lncRNA–Disease Associations

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2020

Identifying the tissues-of-origin of circulating cell-free DNAs is a promising way in noninvasive diagnostics

Briefings in Bioinformatics

DOI

2020

PESM: predicting the essentiality of miRNAs based on gradient boosting machines and sequences

BMC Bioinformatics

DOI

2020

Enhancing the feature representation of multi-modal MRI data by combining multi-view information for MCI classification

Neurocomputing

DOI

2020

Single-Cell Clustering Based on Shared Nearest Neighbor and Graph Partitioning

Interdisciplinary Sciences Computational Life Sciences

DOI

2020

FUNMarker: Fusion Network-Based Method to Identify Prognostic and Heterogeneous Breast Cancer Biomarkers

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2020

Biomedical data and computational models for drug repositioning: a comprehensive review

Briefings in Bioinformatics

DOI

2020

Evaluation of Pathway Activation for a Single Sample Toward Inflammatory Bowel Disease Classification

Frontiers in Genetics

DOI

2020

MAC: Merging Assemblies by Using Adjacency Algebraic Model and Classification

Frontiers in Genetics

DOI

2020

Runtime Performances of Randomized Search Heuristics for the Dynamic Weighted Vertex Cover Problem

Algorithmica

DOI

2020

Schizophrenia Identification Using Multi-View Graph Measures of Functional Brain Networks

Frontiers in Bioengineering and Biotechnology

DOI

2020

De novo Prediction of Drug-Target Interaction via Laplacian Regularized Schatten-p Norm Minimization

Lecture notes in computer science

DOI

2020

A Unified Framework of FPT Approximation Algorithms for Clustering Problems

DROPS (Schloss Dagstuhl – Leibniz Center for Informatics)

DOI

2020

MiRNA-Disease Associations Prediction Based on Negative Sample Selection and Multi-layer Perceptron

Lecture notes in computer science

DOI

2020

On Fixed-Order Book Thickness Parameterized by the Pathwidth of the Vertex Ordering

Lecture notes in computer science

DOI

2020

Characterization and Linear-Time Recognition of Paired Threshold Graphs

Lecture notes in computer science

DOI

2019

基于模糊神经网络的异常网络数据挖掘算法

《计算机科学》

2019

数据挖掘课程中数据思维的培养方法探索

《计算机教育》

DOI

2019

DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning

Bioinform.

DOI

2019

An attention-based neural network basecaller for Oxford Nanopore sequencing data

IEEE International Conference on Bioinformatics and Biomedicine

DOI

2019

IILLS: predicting virus-receptor interactions based on similarity and semi-supervised learning

BMC Bioinformatics

DOI

2019

CSA: a web service for the complete process of ChIP-Seq analysis

BMC Bioinformatics

DOI

2019

A learning based joint compressive sensing for wireless sensing networks

Computer Networks

DOI

2019

AttentionDTA: prediction of drug–target binding affinity using attention model

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2019

Prediction of Microbe-Drug Associations Based on KATZ Measure

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2019

Multi-level Glioma Segmentation using 3D U-Net Combined Attention Mechanism with Atrous Convolution

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2019

de novo repeat detection based on the third generation sequencing reads

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2019

Tentative diagnosis prediction via deep understanding of patient narratives

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2019

Drug and disease similarity calculation platform for drug repositioning

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2019

Measuring Disease Similarity Based on Multiple Heterogeneous Disease Information Networks

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2019

Classification of Schizophrenia by Iterative Random Forest Feature Selection Based on DNA Methylation Array Data

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2019

EPGA-SC : A Framework forde novoAssembly of Single-Cell Sequencing Reads

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2019

AG: Adaptive Switching Granularity for Load Balancing with Asymmetric Topology in Data Center Network

Proceedings/Proceedings - International Conference on Network Protocols

DOI

2019

New kernels for several problems on planar graphs

Theoretical Computer Science

DOI

2019

Protein–protein interaction site prediction through combining local and global features with deep neural networks

Bioinformatics

DOI

2019

PTCP: A priority-based transport control protocol for timeout mitigation in commodity data center

Future Generation Computer Systems

DOI

2019

On Enhancing Network Dynamic Adaptability for Compressive Sensing in WSNs

IEEE Transactions on Communications

DOI

2019

Mild Cognitive Impairment Identification Based on Multi-View Graph Convolutional Networks

International Conference on Advanced Cloud and Big Data

DOI

2019

Protein2Vec: Aligning Multiple PPI Networks with Representation Learning

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2019

Improved approximation algorithms for two-stage flowshops scheduling problem

Theoretical Computer Science

DOI

2019

ILDMSF: Inferring Associations Between Long Non-Coding RNA and Disease Based on Multi-Similarity Fusion

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2019

Runtime analysis of evolutionary algorithms for the depth restricted (1,2)-minimum spanning tree problem

DOI

2019

High-Risk Prediction of Cardiovascular Diseases via Attention-Based Deep Neural Networks

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2019

Deletion Detection Method Using the Distribution of Insert Size and a Precise Alignment Strategy

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2019

An approximation algorithm for the l-pseudoforest deletion problem

Theoretical Computer Science

DOI

2019

A novel extended Pareto Optimality Consensus model for predicting essential proteins

Journal of Theoretical Biology

DOI

2019

Clinical big data and deep learning: Applications, challenges, and future outlooks

Big Data Mining and Analytics

DOI

2019

MultiGuideScan: a multi-processing tool for designing CRISPR guide RNA libraries

Bioinformatics

DOI

2019

A Gene Rank Based Approach for Single Cell Similarity Assessment and Clustering

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2019

DDT

Asia-Pacific Workshop on Networking (APNet)

DOI

2019

Resolution and Domination: An Improved Exact MaxSAT Algorithm

International Joint Conference on Artificial Intelligence

DOI

2019

TLB

Proceedings of the International Conference on Parallel Processing

DOI

2019

An Efficient Authentication Scheme Based on Deployment Knowledge Against Mobile Sink Replication Attack in UWSNs

IEEE Internet of Things Journal

DOI

2019

MCHMDA:Predicting Microbe-Disease Associations Based on Similarities and Low-Rank Matrix Completion

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2019

A Novel Drug Repositioning Approach Based on Collaborative Metric Learning

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2019

Improving TCP Robustness over Asymmetry with Reordering Marking and Coding in Data Centers

IEEE International Conference on Distributed Computing Systems (ICDCS)

DOI

2019

Reducing Flow Completion Time with Replaceable Redundant Packets in Data Center Networks

IEEE International Conference on Distributed Computing Systems (ICDCS)

DOI

2019

Kernels for packing and covering problems

Theoretical Computer Science

DOI

2019

ReActor: Real-time and Accurate Contactless Gesture Recognition with RFID

IEEE International Conference on Sensing, Communication, and Networking (SECON)

DOI

2019

DeepDSC: A Deep Learning Method to Predict Drug Sensitivity of Cancer Cell Lines

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2019

An improved algorithm for the $$(n, 3)$$-MaxSAT problem: asking branchings to satisfy the clauses

Journal of Combinatorial Optimization

DOI

2019

Drug repositioning based on bounded nuclear norm regularization

Bioinformatics

DOI

2019

Fixed-parameter tractability for minimum tree cut/paste distance and minimum common integer partition

Theoretical Computer Science

DOI

2019

Complexity of Additive Committee Selection with Outliers

Adaptive Agents and Multi-Agents Systems

DOI

2019

Current challenges and solutions of de novo assembly

Quantitative Biology

DOI

2019

Efficient multi-kernel DCNN with pixel dropout for stroke MRI segmentation

Neurocomputing

DOI

2019

Identifying Interactions Between Kinases and Substrates Based on Protein–Protein Interaction Network

Journal of Computational Biology

DOI

2019

Understanding and improvement of the selection of replica servers in key–value stores

Information Systems

DOI

2019

Computational Approaches for Transcriptome Assembly Based on Sequencing Technologies

Current Bioinformatics

DOI

2019

Haste makes waste: The On–Off algorithm for replica selection in key–value stores

Journal of Parallel and Distributed Computing

DOI

2019

BRWMDA:Predicting Microbe-Disease Associations Based on Similarities and Bi-Random Walk on Disease and Microbe Networks

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2019

Nothing Blocks Me: Precise and Real-Time LOS/NLOS Path Recognition in RFID Systems

IEEE Internet of Things Journal

DOI

2019

A novel method of gene regulatory network structure inference from gene knock-out expression data

Tsinghua Science & Technology

DOI

2019

Page-sharing-based virtual machine packing with multi-resource constraints to reduce network traffic in migration for clouds

Future Generation Computer Systems

DOI

2019

Deep convolutional neural network for automatically segmenting acute ischemic stroke lesion in multi-modality MRI

Neural Computing and Applications

DOI

2019

Randomized Parameterized Algorithms for the Kidney Exchange Problem

Algorithms

DOI

2019

SinNLRR: a robust subspace clustering method for cell type detection by non-negative and low-rank representation

Bioinformatics

DOI

2019

An Ensemble Method to Reconstruct Gene Regulatory Networks Based on Multivariate Adaptive Regression Splines

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2019

Automatic ICD code assignment of Chinese clinical notes based on multilayer attention BiRNN

Journal of Biomedical Informatics

DOI

2019

A Deep Learning Framework for Identifying Essential Proteins by Integrating Multiple Types of Biological Information

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2019

An Efficient Trimming Algorithm based on Multi-Feature Fusion Scoring Model for NGS Data

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2019

Receiver-driven fair congestion control for TCP outcast in data center networks

Journal of Network and Computer Applications

DOI

2019

A Hybrid Clustering Algorithm for Identifying Cell Types from Single-Cell RNA-Seq Data

Genes

DOI

2019

Scheduling two-stage jobs on multiple flowshops

Theoretical Computer Science

DOI

2019

Task-Aware TCP in Data Center Networks

IEEE/ACM Transactions on Networking

DOI

2019

A Novel Core‐Attachment–Based Method to Identify Dynamic Protein Complexes Based on Gene Expression Profiles and PPI Networks

PROTEOMICS

DOI

2019

A Sequence-Based Novel Approach for Quality Evaluation of Third-Generation Sequencing Reads

Genes

DOI

2019

IDNDDI: An Integrated Drug Similarity Network Method for Predicting Drug-Drug Interactions

Lecture notes in computer science

DOI

2019

An Improved Approximation Algorithm for the k-Means Problem with Penalties

Lecture notes in computer science

DOI

2019

Controllability and Its Applications to Biological Networks

Journal of Computer Science and Technology

DOI

2019

Multi-scale Deep Convolutional Neural Network for Stroke Lesions Segmentation on CT Images

Lecture notes in computer science

DOI

2019

Decoding the Structural Keywords in Protein Structure Universe

Journal of Computer Science and Technology

DOI

2019

A double cascaded framework based on 3D SEAU-Net for kidney and kidney tumor Segmentation

DOI

2019

Identification of Prognostic and Heterogeneous Breast Cancer Biomarkers Based on Fusion Network and Multiple Scoring Strategies

Lecture notes in computer science

DOI

2019

Modeling and Analysis of the Latency-Based Congestion Control Algorithm DX

Lecture notes in computer science

DOI

2019

Local Coloring: New Observations and New Reductions

Lecture notes in computer science

DOI

2019

A 2.57-Approximation Algorithm for Contig-Based Genomic Scaffold Filling

Lecture notes in computer science

DOI

2019

Improving Identification of Essential Proteins by a Novel Ensemble Method

Lecture notes in computer science

DOI

2019

Exponential Time Approximation Scheme for TSP

Lecture notes in computer science

DOI

2019

Overlap matrix completion for predicting drug-associated indications

PLoS Computational Biology

DOI

2019

Deep convolutional neural network for accurate segmentation and quantification of white matter hyperintensities

Neurocomputing

DOI

2019

DDIGIP: predicting drug-drug interactions based on Gaussian interaction profile kernels

BMC Bioinformatics

DOI

2019

Identifying driver genes involving gene dysregulated expression, tissue-specific expression and gene-gene network

BMC Medical Genomics

DOI

2019

D3GRN: a data driven dynamic network construction method to infer gene regulatory networks

BMC Genomics

DOI

2018

特殊图的图修正问题研究综述

《计算机科学》

2018

随机游走技术在网络生物学中的研究进展

《电子学报》

2018

残差字典学习的快速图像超分辨率算法

《计算机科学与探索》

2018

生物信息学研究进展

《玉林师范学院学报》

2018

面向异构资源集成的数字图像实验平台

《计算机工程与应用》

2018

CAPS: Coding-based Adaptive Packet Spraying to Reduce Flow Completion Time in Data Center

DOI

2018

United Neighborhood Closeness Centrality and Orthology for Predicting Essential Proteins

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2018

DWNN-RLS: regularized least squares method for predicting circRNA-disease associations

BMC Bioinformatics

DOI

2018

Disease Inference with Symptom Extraction and Bidirectional Recurrent Neural Network

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2018

K-mer Counting: memory-efficient strategy, parallel computing and field of application for Bioinformatics

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2018

BioRank: A Similarity Assessment Method for Single Cell Clustering

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2018

Analysis of Single-Cell RNA-seq Data by Clustering Approaches

Current Bioinformatics

DOI

2018

FPC: A new approach to firewall policies compression

Tsinghua Science & Technology

DOI

2018

BiXGBoost: a scalable, flexible boosting-based method for reconstructing gene regulatory networks

Bioinformatics

DOI

2018

An interpretable boosting model to predict side effects of analgesics for osteoarthritis

BMC Systems Biology

DOI

2018

MEC: Misassembly Error Correction in Contigs based on Distribution of Paired-End Reads and Statistics of GC-contents

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2018

A hybrid algorithm based on binary chemical reaction optimization and tabu search for feature selection of high-dimensional biomedical data

Tsinghua Science & Technology

DOI

2018

miRTRS: A Recommendation Algorithm for Predicting miRNA Targets

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2018

The purpose driven privacy preservation for accelerometer-based activity recognition

World Wide Web

DOI

2018

QDAPS: Queueing Delay Aware Packet Spraying for Load Balancing in Data Center

Proceedings/Proceedings - International Conference on Network Protocols

DOI

2018

SCOP: a novel scaffolding algorithm based on contig classification and optimization

Bioinformatics

DOI

2018

Control principles for complex biological networks

Briefings in Bioinformatics

DOI

2018

Improved PTAS for the constrained k-means problem

Journal of Combinatorial Optimization

DOI

2018

Improvingde novoAssembly Based on Read Classification

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2018

MultiMotifMaker: A Multi-Thread Tool for Identifying DNA Methylation Motifs from Pacbio Reads

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2018

ConnectedAlign: a PPI network alignment method for identifying conserved protein complexes across multiple species

BMC Bioinformatics