百晓学者学者目录

杨晓涵

讲师，信阳师范大学

精选作品

期刊论文

2024

Advances in the Application of Single-Cell Transcriptomics in Plant Systems and Synthetic Biology

Md Torikul Islam, Yang Liu, M. M. Hassan, Paul E Abraham, Jean Merlet, Alice Townsend, Daniel Jacobson, C. R. Buell, G. Tuskan, Xiaohan Yang

BioDesign Research

DOI

2024

Ribozyme-based biosensor for imaging gene expression in plants

Yang Liu, Ruchika Rajput, Torikul Islam, I. Del Valle, Tao Yao, R. Agarwal, Brandon A Boone, Carrie A. Eckert, Paul E Abraham, Jin-Gui Chen, G. Tuskan, Xiaohan Yang

bioRxiv

DOI

2023

CRISPR/Cas9-based gene activation and base editing in Populus

Tao Yao, Guo-Liang Yuan, Hai-Wei Lu, Yang Liu, Jin Zhang, G. Tuskan, W. Muchero, Jin-Gui Chen, Xiaohan Yang

Horticulture Research

DOI

2023

Engineered dsRNA-protein nanoparticles for effective long-distance transport, delivery and gene silencing in plants

Huayu Sun, Ankarao Kalluri, Dan Tang, Jingwen Ding, Long-Mei Zhai, Xianbin Gu, Yan-Jun Li, Huseyin Yer, Xiaohan Yang, G. Tuskan, Zhan-Ao Deng, F. Gmitter, Hui Duan, Challa V. Kumar, Yi Li

bioRxiv

DOI

2023

Plant Promoters and Terminators for High-Precision Bioengineering

Emily G. Brooks, E. Elorriaga, Yang Liu, James R. Duduit, Guo-Liang Yuan, Chung-Jui Tsai, G. Tuskan, T. Ranney, Xiaohan Yang, Wusheng Liu

BioDesign Research

DOI

2023

Use of Fluorescent Protein Reporters for Assessing and Detecting Genome Editing Reagents and Transgene Expression in Plants.

Guo-Liang Yuan, G. Tuskan, Xiaohan Yang

Methods in molecular biology

DOI

2023

eYGFPuv-Assisted Transgenic Selection in Populus deltoides WV94 and Multiplex Genome Editing in Protoplasts of P. trichocarpa × P. deltoides Clone ‘52-225’

Guo-Liang Yuan, Yang Liu, Tao Yao, W. Muchero, Jin-Gui Chen, G. Tuskan, Xiaohan Yang

Plants

DOI

2023

Expanding the application of anti-CRISPR proteins in plants for tunable genome editing

Yang Liu, Guo-Liang Yuan, Brennan Hyden, G. Tuskan, P. Abraham, Xiaohan Yang

Plant Physiology

DOI

2023

JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom

A. Sreedasyam, C. Plott, M. Hossain, J. Lovell, J. Grimwood, J. Jenkins, C. Daum, K. Barry, J. Carlson, S. Shu, J. Phillips, Mojgan Amirebrahimi, M. Zane, Mei Wang, D. Goodstein, F. Haas, Manuel Hiß, P. Perroud, S. Jawdy, Yongil Yang, Rong-Bin Hu, Jenifer Johnson, J. Kropat, S. Gallaher, A. Lipzen, E. Shakirov, Xiaoyu Weng, I. Torres-Jerez, B. Weers, D. Conde, M. Pappas, Lifeng Liu, Andrew Muchlinski, Hui Jiang, C. Shyu, Pu Huang, J. Sebastian, Carol Laiben, Alyssa Medlin, Sankalpi Carey, A. Carrell, Jin-Gui Chen, Mariano Perales, K. Swaminathan, I. Allona, D. Grattapaglia, Elizabeth A. Cooper, D. Tholl, J. Vogel, D. Weston, Xiaohan Yang, T. Brutnell, E. Kellogg, Ivan R. Baxter, M. Udvardi, Yu-Hong Tang, T. Mockler, T. Juenger, J. Mullet, S. Rensing, G. Tuskan, S. Merchant, G. Stacey, J. Schmutz

Nucleic Acids Research

DOI

2023

Overexpression of REDUCED WALL ACETYLATION C increases xylan acetylation and biomass recalcitrance in Populus

Jin Zhang, Xiaqin Wang, Hsin-Tzu Wang, Zhenzhen Qiao, Tao Yao, Meng Xie, B. Urbanowicz, Wei Zeng, S. Jawdy, L. Gunter, Xiaohan Yang, Olaf Czarnecki, S. Regan, A. Séguin, W. Rottmann, K. Winkeler, Robert W. Sykes, A. Lipzen, C. Daum, K. Barry, Meng-Zhu Lu, G. Tuskan, W. Muchero, Jin-Gui Chen

Plant Physiology

DOI

2023

Split selectable marker systems utilizing inteins facilitate gene stacking in plants

Guo-Liang Yuan, Hai-Wei Lu, Kuntal De, M. Hassan, Yang Liu, Md Torikul Islam, W. Muchero, G. Tuskan, Xiaohan Yang

Communications Biology

DOI

2023

Functional analysis of Salix purpurea genes support roles for ARR17 and GATA15 as master regulators of sex determination

Brennan Hyden, Dana L. Carper, P. Abraham, Guo-Liang Yuan, Tao Yao, Leo A. Baumgart, Yu Zhang, Cindy Chen, R. O'Malley, Jin-Gui Chen, Xiaohan Yang, R. Hettich, G. Tuskan, L. Smart

bioRxiv

DOI

2023

Diel dynamics of multi-omics in elkhorn fern provide new insights into weak CAM photosynthesis

Cheng Li, Wen-Jie Huang, Xiao Han, Guohua Zhao, Wen-Yang Zhang, Weijun He, Bao Nie, Xu-Feng Chen, Taijie Zhang, Wenhui Bai, Xiaopeng Zhang, Jingjing He, Cheng Zhao, A. Fernie, T. Tschaplinski, Xiaohan Yang, Shi-Juan Yan, Li Wang

Plant Communications

DOI

2022

Protoplast-Based Transient Expression and Gene Editing in Shrub Willow (Salix purpurea L.)

Brennan Hyden, Guo-Liang Yuan, Yang Liu, L. Smart, G. Tuskan, Xiaohan Yang

Plants

DOI

2022

Diversity and conservation of plant small secreted proteins associated with arbuscular mycorrhizal symbiosis

Xiao-Li Hu, Jin Zhang, Rakesh Kaundal, Raghav Kataria, Jesse L. Labbé, Julie C. Mitchell, T. Tschaplinski, G. Tuskan, Z. Cheng, Xiaohan Yang

Horticulture Research

DOI

2022

PARA: A New Platform for the Rapid Assembly of gRNA Arrays for Multiplexed CRISPR Technologies

Guo-Liang Yuan, Stanton L. Martin, M. Hassan, G. Tuskan, Xiaohan Yang

Cells

DOI

2022

Precision genome editing in plants using gene targeting and prime editing: existing and emerging strategies

M. Hassan, Guo-Liang Yuan, Yang Liu, Mobashwer M. Alam, C. Eckert, G. Tuskan, J. Golz, Xiaohan Yang

Biotechnology Journal

DOI

2022

Phylogeny and Expression Atlas of the NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER FAMILY in Agave

Shi-Bei Tan, Yan-Qiong Liang, Yanlei Huang, Jin-Gen Xi, Xing Huang, Xiaohan Yang, K. Yi

Plants

DOI

2022

Genome-wide identification and functional prediction of silicon (Si) transporters in poplar (Populus trichocarpa)

M. Hassan, Samir Martin, Kai Feng, Timothy B. Yates, Guo-Liang Yuan, Madhavi Z. Martin, Stanton Martin, W. Muchero, N. Griffiths, D. Weston, Xiaohan Yang

Plant Biotechnology Reports

DOI

2022

Agave REVEILLE1 regulates the onset and release of seasonal dormancy in Populus

De-Gao Liu, Dan Tang, Meng Xie, Jin Zhang, Long-Mei Zhai, Jiang-Ping Mao, Chaoyun Luo, A. Lipzen, Yu Zhang, Emily Savage, Guo-Liang Yuan, Hao-Bo Guo, D. Tadesse, Rong-Bin Hu, S. Jawdy, Hua Cheng, Lin-Ling Li, Huseyin Yer, M. Clark, Huayu Sun, Jiyuan Shi, Roshani Budhathoki, Rahul Kumar, Troy Kamuda, Yan-Jun Li, C. Pennacchio, K. Barry, J. Schmutz, R. Berry, W. Muchero, Jin-Gui Chen, Yi Li, G. Tuskan, Xiaohan Yang

Plant Physiology

DOI

2022

Biological and Molecular Components for Genetically Engineering Biosensors in Plants

Yang Liu, Guo-Liang Yuan, M. M. Hassan, P. Abraham, Julie C. Mitchell, Daniel Jacobson, G. Tuskan, Arjun Khakhar, June I. Medford, Cheng Zhao, Chang-Jun Liu, Carrie A. Eckert, M. Doktycz, T. Tschaplinski, Xiaohan Yang

BioDesign Research

DOI

2022

Reporter genes confer new-to-nature ornamental traits in plants

Guo-Liang Yuan, Hai-Wei Lu, D. Weston, S. Jawdy, T. Tschaplinski, G. Tuskan, Xiaohan Yang

Horticulture Research

DOI

2022

Transcriptome Sequencing of Agave angustifolia Reveals Conservation and Diversification in the Expression of Cinnamyl Alcohol Dehydrogenase Genes in Agave Species

Xing Huang, Bo-Chao Xu, Shi-Bei Tan, Yanlei Huang, Jin-Gen Xi, Xu Qin, Tao Chen, He-Long Chen, Xiaohan Yang, K. Yi

Agriculture

DOI

2022

Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants.

Rong-Bin Hu, Jin Zhang, S. Jawdy, A. Sreedasyam, A. Lipzen, Mei Wang, Vivian Ng, C. Daum, K. Keymanesh, De-Gao Liu, Hai-Wei Lu, P. Ranjan, Jin-Gui Chen, W. Muchero, T. Tschaplinski, G. Tuskan, J. Schmutz, Xiaohan Yang

Journal of plant physiology

DOI

2021

Expanding the application of a UV-visible reporter for transient gene expression and stable transformation in plants

Guo-Liang Yuan, Hai-Wei Lu, Dan Tang, M. Hassan, Yi Li, Jin-Gui Chen, G. Tuskan, Xiaohan Yang

Horticulture Research

DOI

2021

Biomass formation and sugar release efficiency of Populus modified by altered expression of a NAC transcription factor

R. Payyavula, Raghuram Badmi, S. Jawdy, Miguel Rodriguez, L. Gunter, Robert W. Sykes, K. Winkeler, Cassandra Collins, W. Rottmann, Jin-Gui Chen, Xiaohan Yang, G. Tuskan, U. Kalluri

bioRxiv

DOI

2021

Advances and perspectives in discovery and functional analysis of small secreted proteins in plants

Xiao-Li Hu, Hai-Wei Lu, M. Hassan, Jin Zhang, Guo-Liang Yuan, P. Abraham, Him K. Shrestha, Manuel I. Villalobos Solis, Jin-Gui Chen, T. Tschaplinski, M. Doktycz, G. Tuskan, Z. Cheng, Xiaohan Yang

Horticulture Research

DOI

2021

Plant-based biosensors for detecting CRISPR-mediated genome engineering

Guo-Liang Yuan, M. Hassan, Tao Yao, Hai-Wei Lu, Michael Melesse Vergara, Jesse L. Labbé, W. Muchero, Changtian Pan, Jin-Gui Chen, G. Tuskan, Yi-Ping Qi, P. Abraham, Xiaohan Yang

bioRxiv

DOI

2021

Transcriptome and Degradome Profiling Reveals a Role of miR530 in the Circadian Regulation of Gene Expression in Kalanchoë marnieriana

Zhikang Hu, Z. Nie, Chao Yan, Hu Huang, Xianjin Ma, Yu-Peng Wang, N. Ye, G. Tuskan, Xiaohan Yang, Heng-Fu Yin

Cells

DOI

2021

Construct design for CRISPR/Cas-based genome editing in plants.

M. Hassan, Ying-Xiao Zhang, Guo-Liang Yuan, Kuntal De, Jin-Gui Chen, W. Muchero, G. Tuskan, Yi-Ping Qi, Xiaohan Yang

Trends in Plant Science

DOI

2021

Biological Parts for Plant Biodesign to Enhance Land-Based Carbon Dioxide Removal

Xiaohan Yang, De-Gao Liu, Hai-Wei Lu, D. Weston, Jin-Gui Chen, W. Muchero, S. Martín, Yang Liu, M. Hassan, Guo-Liang Yuan, U. Kalluri, T. Tschaplinski, Julie C. Mitchell, S. Wullschleger, G. Tuskan

BioDesign Research

DOI

2021

Overexpression of an Agave Phosphoenolpyruvate Carboxylase Improves Plant Growth and Stress Tolerance

De-Gao Liu, Rong-Bin Hu, Jin Zhang, Hao-Bo Guo, Hua Cheng, Lin-Ling Li, A. Borland, Hong Qin, Jin-Gui Chen, W. Muchero, G. Tuskan, Xiaohan Yang

Cells

DOI

2021

An Intein-Mediated Split–nCas9 System for Base Editing in Plants

Guo-Liang Yuan, Hai-Wei Lu, Kuntal De, M. Hassan, Yang Liu, Yi Li, W. Muchero, P. Abraham, G. Tuskan, Xiaohan Yang

bioRxiv

DOI

2021

Temporal dynamics of protein and post‐translational modification abundances in Populus leaf across a diurnal period

Him K. Shrestha, Manuel I. Villalobos Solis, S. Jawdy, G. Tuskan, Xiaohan Yang, P. Abraham

Proteomics

DOI

2021

Recent Advances in the Roles of HSFs and HSPs in Heat Stress Response in Woody Plants

Feng-Xia Tian, Xiao-Li Hu, Tao Yao, Xiaohan Yang, Jin-Gui Chen, Meng-Zhu Lu, Jin Zhang

Frontiers in Plant Science

DOI

2020

Editorial: Systems Biology and Synthetic Biology in Relation to Drought Tolerance or Avoidance in Plants

Xiaohan Yang, J. Cushman, A. Borland, Qing-Chang Liu

Frontiers in Plant Science

DOI

2020

Plant Biosystems Design for a Carbon-Neutral Bioeconomy

U. Kalluri, Xiaohan Yang, S. Wullschleger

BioDesign Research

DOI

2020

Biosystems Design to Accelerate C3-to-CAM Progression

Guo-Liang Yuan, M. Hassan, De-Gao Liu, S. Lim, Won Yim, J. Cushman, K. Markel, Patrick M. Shih, Hai-Wei Lu, D. Weston, Jin-Gui Chen, T. Tschaplinski, G. Tuskan, Xiaohan Yang

BioDesign Research

DOI

2020

The Role of Synthetic Biology in Atmospheric Greenhouse Gas Reduction: Prospects and Challenges

C. DeLisi, A. Patrinos, M. Maccracken, D. Drell, G. Annas, A. Arkin, G. Church, Robert Cook-Deegan, H. Jacoby, M. Lidstrom, J. Melillo, R. Milo, K. Paustian, J. Reilly, R. Roberts, D. Segrè, S. Solomon, D. Woolf, S. Wullschleger, Xiaohan Yang

BioDesign Research

DOI

2020

Prime Editing Technology and Its Prospects for Future Applications in Plant Biology Research

M. Hassan, Guo-Liang Yuan, Jin-Gui Chen, G. Tuskan, Xiaohan Yang

BioDesign Research

DOI

2020

Plant Biosystems Design Research Roadmap 1.0

Xiaohan Yang, J. Medford, K. Markel, Patrick M. Shih, H. D. De Paoli, C. Trinh, A. McCormick, R. Ployet, S. Hussey, A. Myburg, P. Jensen, M. Hassan, Jin Zhang, W. Muchero, U. Kalluri, Heng-Fu Yin, R. Zhuo, P. Abraham, Jin-Gui Chen, D. Weston, Yinong Yang, De-Gao Liu, Yi Li, J. Labbé, Bing Yang, Jun Hyung Lee, R. Cottingham, Stanton L. Martin, Meng-Zhu Lu, T. Tschaplinski, Guo-Liang Yuan, Hai-Wei Lu, P. Ranjan, Julie C. Mitchell, S. Wullschleger, G. Tuskan

BioDesign Research

DOI

2020

Reconfiguring Plant Metabolism for Biodegradable Plastic Production

Hai-Wei Lu, Guo-Liang Yuan, S. Strauss, T. Tschaplinski, G. Tuskan, Jin-Gui Chen, Xiaohan Yang

BioDesign Research

DOI

2020

Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism

Jin Zhang, Rong-Bin Hu, A. Sreedasyam, Travis M. Garcia, A. Lipzen, Mei Wang, Pradeep Yerramsetty, De-Gao Liu, Vivian Ng, J. Schmutz, J. Cushman, A. Borland, A. Pasha, N. Provart, Jin-Gui Chen, W. Muchero, G. Tuskan, Xiaohan Yang

GigaScience

DOI

2019

Correction to: Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave

Heng-Fu Yin, Hao-Bo Guo, D. Weston, A. Borland, P. Ranjan, P. Abraham, S. Jawdy, J. Wachira, G. Tuskan, T. Tschaplinski, S. Wullschleger, Hong Guo, R. Hettich, Stephen Gross, Zhong Wang, A. Visel, Xiaohan Yang

BMC Genomics

DOI

2019

Overexpression of a Prefoldin β subunit gene reduces biomass recalcitrance in the bioenergy crop Populus

Jin Zhang, Meng Xie, Mi Li, Jinhua Ding, Yun-Qiao Pu, A. C. Bryan, W. Rottmann, K. Winkeler, Cassandra Collins, V. Singan, E. Lindquist, S. Jawdy, L. Gunter, N. Engle, Xiaohan Yang, K. Barry, T. Tschaplinski, J. Schmutz, G. Tuskan, W. Muchero, Jin-Gui Chen

Plant Biotechnology Journal

DOI

2019

Biodesign Research to Advance the Principles and Applications of Biosystems Design

Xiaohan Yang, L. Qi, A. Jaramillo, Z. Cheng

BioDesign Research

DOI

2019

Multitrait genome-wide association analysis of Populus trichocarpa identifies key polymorphisms controlling morphological and physiological traits.

H. B. Chhetri, D. Macaya-Sanz, D. Kainer, A. Biswal, L. Evans, Jin-Gui Chen, Cassandra Collins, Kimberly Hunt, S. S. Mohanty, T. Rosenstiel, David Ryno, K. Winkeler, Xiaohan Yang, Daniel A. Jacobson, D. Mohnen, W. Muchero, S. Strauss, T. Tschaplinski, G. Tuskan, S. DiFazio

New Phytologist

DOI

2019

Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis

Ritesh Mewalal, Heng-Fu Yin, Rong-Bin Hu, S. Jawdy, Patrice Vion, G. Tuskan, F. Le Tacon, J. Labbé, Xiaohan Yang

Frontiers in Microbiology

DOI

2019

Agrobacterium–mediated Transformation of Kalanchoe laxiflora

Xiling Wang, Xin-Lu Chen, Qun-Kang Cheng, Kaikai Zhu, Xiaohan Yang, Z. Cheng

Horticultural Plant Journal

DOI

2019

Comparative genomics can provide new insights into the evolutionary mechanisms and gene function in CAM plants

Xiaohan Yang, De-Gao Liu, T. Tschaplinski, G. Tuskan

Journal of Experimental Botany

DOI

2019

PdWND3A, a wood-associated NAC domain-containing protein, affects lignin biosynthesis and composition in Populus

Yongil Yang, C. G. Yoo, W. Rottmann, K. Winkeler, Cassandra Collins, L. Gunter, S. Jawdy, Xiaohan Yang, Yun-Qiao Pu, A. Ragauskas, G. Tuskan, Jin-Gui Chen

BMC Plant Biology

DOI

2019

Comparative Genomics Analysis Provides New Insight Into Molecular Basis of Stomatal Movement in Kalanchoë fedtschenkoi

Robert C. Moseley, G. Tuskan, Xiaohan Yang

Frontiers in Plant Science

DOI

2019

Overexpression of a serine hydroxymethyltransferase increases biomass production and reduces recalcitrance in the bioenergy crop Populus

Jin Zhang, Mi Li, A. C. Bryan, C. G. Yoo, W. Rottmann, K. Winkeler, Cassandra Collins, V. Singan, E. Lindquist, S. Jawdy, L. Gunter, N. Engle, Xiaohan Yang, K. Barry, T. Tschaplinski, J. Schmutz, Yun-Qiao Pu, A. Ragauskas, G. Tuskan, W. Muchero, Jin-Gui Chen

Sustainable Energy & Fuels

DOI

2019

Inference of Gene Regulatory Network Uncovers the Linkage between Circadian Clock and Crassulacean Acid Metabolism in Kalanchoë fedtschenkoi

Robert C. Moseley, Francis C. Motta, G. Tuskan, Steven B. Haase, Xiaohan Yang

bioRxiv

DOI

2019

CRISPR/Cas9-mediated targeted mutagenesis for functional genomics research of crassulacean acid metabolism plants

De-Gao Liu, Mei Chen, B. Mendoza, Hua Cheng, Rong-Bin Hu, Lin-Ling Li, C. Trinh, G. Tuskan, Xiaohan Yang

Journal of Experimental Botany

DOI

2019

The nature of the progression of drought stress drives differential metabolomic responses in Populus deltoides.

T. Tschaplinski, P. Abraham, S. Jawdy, L. Gunter, Madhavi Z. Martin, N. Engle, Xiaohan Yang, G. Tuskan

Annals of Botany

DOI

2019

Mediation of plant–mycorrhizal interaction by a lectin receptor-like kinase

J. Labbé, W. Muchero, Olaf Czarnecki, Juan Wang, Xiao-Ping Wang, A. C. Bryan, K. Zheng, Yongil Yang, Meng Xie, Jin Zhang, Dongfang Wang, Peter Meidl, Hemeng Wang, J. Morrell-Falvey, Kevin R. Cope, L. Maia, Jean-Michel Ané, Ritesh Mewalal, S. Jawdy, L. Gunter, W. Schackwitz, Joel A. Martin, F. Le Tacon, Ting-Gang Li, Zhihao Zhang, P. Ranjan, E. Lindquist, Xiaohan Yang, Daniel A. Jacobson, T. Tschaplinski, K. Barry, J. Schmutz, Jin-Gui Chen, G. Tuskan

Nature Plants

DOI

2018

Quantitative proteome profile of water deficit stress responses in eastern cottonwood (Populus deltoides) leaves

P. Abraham, Benjamin J Garcia, L. Gunter, S. Jawdy, N. Engle, Xiaohan Yang, Daniel A. Jacobson, R. Hettich, G. Tuskan, T. Tschaplinski

PLoS ONE

DOI

2018

Perspectives on the basic and applied aspects of crassulacean acid metabolism (CAM) research.

De-Gao Liu, Kaitlin J. Palla, Rong-Bin Hu, Robert C. Moseley, C. Mendoza, Mei Chen, P. Abraham, J. Labbé, U. Kalluri, T. Tschaplinski, J. Cushman, A. Borland, G. Tuskan, Xiaohan Yang

Plant Science

DOI

2018

Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis

A. Biswal, Melani A. Atmodjo, Mi Li, Holly L. Baxter, C. G. Yoo, Yun-Qiao Pu, Yi-Ching Lee, M. Mazarei, Ian M. Black, Jiyi Zhang, H. Ramanna, Adam L. Bray, Z. King, P. LaFayette, S. Pattathil, B. Donohoe, S. S. Mohanty, David Ryno, Kelsey Yee, Olivia A. Thompson, Miguel Rodriguez, A. Dumiţrache, Jace Natzke, K. Winkeler, Cassandra Collins, Xiaohan Yang, Li Tan, Robert W. Sykes, E. Gjersing, A. Ziebell, Geoffrey B. Turner, S. Decker, M. Hahn, B. Davison, M. Udvardi, J. Mielenz, Mark F. Davis, R. S. Nelson, W. Parrott, A. Ragauskas, C. Stewart, D. Mohnen

Nature Biotechnology

DOI

2018

Conservation and Diversification of Circadian Rhythmicity Between a Model Crassulacean Acid Metabolism Plant Kalanchoë fedtschenkoi and a Model C3 Photosynthesis Plant Arabidopsis thaliana

Robert C. Moseley, Ritesh Mewalal, Francis C. Motta, G. Tuskan, Steven B. Haase, Xiaohan Yang

Frontiers in Plant Science

DOI

2018

A New Calmodulin-Binding Protein Expresses in the Context of Secondary Cell Wall Biosynthesis and Impacts Biomass Properties in Populus

Raghuram Badmi, R. Payyavula, Garima Bali, Hao-Bo Guo, S. Jawdy, L. Gunter, Xiaohan Yang, K. Winkeler, Cassandra Collins, W. Rottmann, Kelsey Yee, Miguel Rodriguez, Robert W. Sykes, S. Decker, Mark F. Davis, A. Ragauskas, G. Tuskan, U. Kalluri

Frontiers in Plant Science

DOI

2018

Phytobiome and transcriptional adaptation of Populus deltoides to acute progressive drought and cyclic drought.

Benjamin J Garcia, J. Labbé, Piet Jones, P. Abraham, I. Hodge, S. Climer, S. Jawdy, L. Gunter, G. Tuskan, Xiaohan Yang, T. Tschaplinski, Daniel A. Jacobson

DOI

2018

A Vitis vinifera basic helix–loop–helix transcription factor enhances plant cell size, vegetative biomass and reproductive yield

S. Lim, Won Yim, De-Gao Liu, Rong-Bin Hu, Xiaohan Yang, J. Cushman

Plant Biotechnology Journal

DOI

2018

Functional Anatomical Traits of the Photosynthetic Organs of Plants with Crassulacean Acid Metabolism

A. Borland, Alistair Leverett, Natalia Hurtado-Castano, Rong-Bin Hu, Xiaohan Yang

DOI

2018

Working towards recalcitrance mechanisms: increased xylan and homogalacturonan production by overexpression of GAlactUronosylTransferase12 (GAUT12) causes increased recalcitrance and decreased growth in Populus

A. Biswal, Melani A. Atmodjo, S. Pattathil, Rob Amos, Xiaohan Yang, K. Winkeler, Cassandra Collins, S. S. Mohanty, David Ryno, Li Tan, I. Gelineo-Albersheim, Kimberly Hunt, Robert W. Sykes, Geoffrey B. Turner, A. Ziebell, Mark F. Davis, S. Decker, M. Hahn, D. Mohnen

Biotechnology for Biofuels

DOI

2018

Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave

Heng-Fu Yin, Hao-Bo Guo, D. Weston, A. Borland, P. Ranjan, P. Abraham, S. Jawdy, J. Wachira, G. Tuskan, T. Tschaplinski, S. Wullschleger, Hong Guo, R. Hettich, Stephen Gross, Zhong Wang, A. Visel, Xiaohan Yang

BMC Genomics

DOI

2017

Disposition and bioavailability of inulin and free sugar in untreated and dilute acid pretreated Agave tequilana leaves

Dan M. Close, Miguel Rodriguez, Rong-Bin Hu, Xiaohan Yang

DOI

2017

New technologies accelerate the exploration of non-coding RNAs in horticultural plants

De-Gao Liu, Ritesh Mewalal, Rong-Bin Hu, G. Tuskan, Xiaohan Yang

Horticulture Research

DOI

2017

Overexpression of a Domain of Unknown Function 231-containing protein increases O-xylan acetylation and cellulose biosynthesis in Populus

Yongil Yang, C. G. Yoo, K. Winkeler, Cassandra Collins, M. Hinchee, S. Jawdy, L. Gunter, N. Engle, Yun-Qiao Pu, Xiaohan Yang, T. Tschaplinski, A. Ragauskas, G. Tuskan, Jin-Gui Chen

Biotechnology for Biofuels

DOI

2017

Populus trichocarpa encodes small, effector-like secreted proteins that are highly induced during mutualistic symbiosis

J. Plett, Heng-Fu Yin, Ritesh Mewalal, Rong-Bin Hu, Ting-Gang Li, P. Ranjan, S. Jawdy, H. D. De Paoli, G. Butler, Tessa M. Burch-Smith, Hao-Bo Guo, Chun-Ju Chen, A. Kohler, I. Anderson, J. Labbé, F. Martin, G. Tuskan, Xiaohan Yang

Scientific Reports

DOI

2017

Overexpression of a Domain of Unknown Function 266-containing protein results in high cellulose content, reduced recalcitrance, and enhanced plant growth in the bioenergy crop Populus

Yongil Yang, C. G. Yoo, Hao-Bo Guo, W. Rottmann, K. Winkeler, Cassandra Collins, L. Gunter, S. Jawdy, Xiaohan Yang, Hong Guo, Yun-Qiao Pu, A. Ragauskas, G. Tuskan, Jin-Gui Chen

Biotechnology for Biofuels

DOI

2016

An innovative platform for quick and flexible joining of assorted DNA fragments

H. D. De Paoli, G. Tuskan, Xiaohan Yang

Scientific Reports

DOI

2016

Knockdown of a laccase in Populus deltoides confers altered cell wall chemistry and increased sugar release

A. C. Bryan, S. Jawdy, L. Gunter, Erica E. Gjersing, Robert W. Sykes, M. Hinchee, K. Winkeler, Cassandra Collins, N. Engle, T. Tschaplinski, Xiaohan Yang, G. Tuskan, W. Muchero, Jin-Gui Chen

Plant Biotechnology Journal

DOI

2016

Transcript, protein and metabolite temporal dynamics in the CAM plant Agave

P. Abraham, Heng-Fu Yin, A. Borland, Deborah A. Weighill, S. Lim, H. D. De Paoli, N. Engle, Piet Jones, R. Agh, D. Weston, S. Wullschleger, T. Tschaplinski, Daniel A. Jacobson, J. Cushman, R. Hettich, G. Tuskan, Xiaohan Yang

Nature Plants

DOI

2016

Advances and perspectives on the use of CRISPR/Cas9 systems in plant genomics research.

De-Gao Liu, Rong-Bin Hu, Kaitlin J. Palla, G. Tuskan, Xiaohan Yang

Current opinion in plant biology

DOI

2016

Comparative Evolution of Crassulacean Acid Metabolism (CAM)

Xiaohan Yang

2016

Genome-wide analysis of lectin receptor-like kinases in Populus

Yongil Yang, J. Labbé, W. Muchero, Xiaohan Yang, S. Jawdy, M. Kennedy, Jenifer Johnson, A. Sreedasyam, J. Schmutz, G. Tuskan, Jin-Gui Chen

BMC Genomics

DOI

2016

Additional file 10: of Genome-wide analysis of lectin receptor-like kinases in Populus

Yongil Yang, Jessy LabbĂŠ, W. Muchero, Xiaohan Yang, S. Jawdy, M. Kennedy, Jenifer Johnson, A. Sreedasyam, J. Schmutz, G. Tuskan, Jin-Gui Chen

DOI

2016

Simultaneous knockdown of six non-family genes using a single synthetic RNAi fragment in Arabidopsis thaliana

Olaf Czarnecki, A. C. Bryan, S. Jawdy, Xiaohan Yang, Z. Cheng, Jin-Gui Chen, G. Tuskan

Plant Methods

DOI

2016

Orchestration of carbohydrate processing for crassulacean acid metabolism.

A. Borland, Hao-Bo Guo, Xiaohan Yang, J. Cushman

Current opinion in plant biology

DOI

2015

Downregulation of GAUT12 in Populus deltoides by RNA silencing results in reduced recalcitrance, increased growth and reduced xylan and pectin in a woody biofuel feedstock

A. Biswal, Zhang-Ying Hao, S. Pattathil, Xiaohan Yang, K. Winkeler, Cassandra Collins, S. S. Mohanty, E. Richardson, I. Gelineo-Albersheim, Kimberly Hunt, David Ryno, Robert W. Sykes, Geoffrey B. Turner, A. Ziebell, E. Gjersing, Wolfgang Lukowitz, Mark F. Davis, S. Decker, M. Hahn, D. Mohnen

Biotechnology for Biofuels

DOI

2015

Climate-resilient agroforestry: physiological responses to climate change and engineering of crassulacean acid metabolism (CAM) as a mitigation strategy.

A. Borland, S. Wullschleger, D. Weston, James Hartwell, G. Tuskan, Xiaohan Yang, J. Cushman

Plant, Cell and Environment

DOI

2015

Plant Comparative and Functional Genomics

Xiaohan Yang, J. Leebens-Mack, Feng Chen, Yan-Bin Yin

International Journal of Genomics

DOI

2015

Genome-Wide Discovery of Non-Coding RNAs in Willow ( Salix purpurea )

Xiaohan Yang

2015

Development of Agave as a dedicated biomass source: production of biofuels from whole plants

J. Mielenz, Miguel Rodriguez, Olivia A. Thompson, Xiaohan Yang, Heng-Fu Yin

Biotechnology for Biofuels

DOI

2015

Development and use of bioenergy feedstocks for semi-arid and arid lands.

J. Cushman, S. Davis, Xiaohan Yang, A. Borland

Journal of Experimental Botany

DOI

2015

The pineapple genome and the evolution of CAM photosynthesis

R. Ming, R. VanBuren, C. Wai, Hai-Bao Tang, M. Schatz, J. Bowers, E. Lyons, Ming-Li Wang, Jung Chen, E. Biggers, Ji-Sen Zhang, Lixian Huang, Lingmao Zhang, Wenjing Miao, Jian Zhang, Z. Ye, Chenyong Miao, Z. Lin, Hao Wang, Hongye Zhou, Won Yim, H. Priest, Chunfang Zheng, M. Woodhouse, P. Edger, R. Guyot, Hao-Bo Guo, Hong Guo, Guang-Yong Zheng, R. Singh, Anupma Sharma, Xiang-Jia Min, Yun Zheng, Hayan Lee, James Gurtowski, F. Sedlazeck, A. Harkess, M. McKain, Zhenyang Liao, Jingping Fang, Juan Liu, Xiaodan Zhang, Qing Zhang, Weichang Hu, Yuan Qin, Kai Wang, Li-Yu Chen, N. Shirley, Yann-rong Lin, L. Liu, Alvaro G. Hernandez, C. Wright, V. Bulone, G. Tuskan, Katy D. Heath, F. Zee, P. Moore, R. Sunkar, J. Leebens-Mack, T. Mockler, J. Bennetzen, M. Freeling, D. Sankoff, A. Paterson, Xin-Yi Zhu, Xiaohan Yang, J. Smith, J. Cushman, R. Paull, Qingyi Yu

Nature Genetics

DOI

2015

A host plant genome (Zizania latifolia) after a century-long endophyte infection.

Long-Biao Guo, Jie Qiu, Zujing Han, Zihong Ye, Chao Chen, Chuanju Liu, Xiu-Fang Xin, Chu-Yu Ye, Ying-Ying Wang, Hongqing Xie, Yu Wang, Jian-Dong Bao, She Tang, Jie Xu, Yi-Jie Gui, F. Fu, Wei-Di Wang, Xingchen Zhang, Qianhua Zhu, Xuan-Min Guang, Chongzhi Wang, H. Cui, D. Cai, S. Ge, G. Tuskan, Xiaohan Yang, Q. Qian, S. He, Jun Wang, Xue-Ping Zhou, Long-Jiang Fan

The Plant Journal

DOI

2015

A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world.

Xiaohan Yang, J. Cushman, A. Borland, E. Edwards, S. Wullschleger, G. Tuskan, N. Owen, H. Griffiths, J. Smith, H. D. De Paoli, D. Weston, R. Cottingham, James Hartwell, S. Davis, K. Silvera, R. Ming, K. Schlauch, P. Abraham, J. Stewart, Hao-Bo Guo, Rebecca L. Albion, Jungmin Ha, S. Lim, Bernard W. M. Wone, Won Yim, Travis M. Garcia, Jesse A. Mayer, J. Petereit, S. S. Nair, Erin Casey, R. Hettich, J. Ceusters, P. Ranjan, Kaitlin J. Palla, Heng-Fu Yin, C. Reyes-García, J. Andrade, Luciano Freschi, Juan D. Beltrán, L. Dever, Susanna F. Boxall, J. Waller, Jack Davies, Phaitun Bupphada, Nirja Kadu, K. Winter, R. Sage, Cristóbal N. Aguilar, J. Schmutz, J. Jenkins, J. Holtum

New Phytologist

DOI

2014

The genome of Eucalyptus grandis

A. Myburg, D. Grattapaglia, G. Tuskan, U. Hellsten, R. Hayes, J. Grimwood, J. Jenkins, E. Lindquist, H. Tice, D. Bauer, D. Goodstein, I. Dubchak, A. Poliakov, E. Mizrachi, Anand R. K. Kullan, S. Hussey, D. Pinard, K. van der Merwe, Pooja Singh, I. van Jaarsveld, O. Silva-Junior, R. Togawa, M. Pappas, D. Faria, C. Sansaloni, C. Petroli, Xiaohan Yang, P. Ranjan, T. Tschaplinski, Chu-Yu Ye, Ting Li, L. Sterck, K. Vanneste, F. Murat, Marçal Soler, H. Clemente, N. Saidi, H. Cassan-Wang, C. Dunand, C. Hefer, E. Bornberg-Bauer, A. Kersting, K. Vining, Vindhya Amarasinghe, M. Ranik, S. Naithani, J. Elser, A. Boyd, A. Liston, J. Spatafora, P. Dharmwardhana, R. Raja, C. Sullivan, E. Romanel, M. Alves-Ferreira, C. Külheim, W. Foley, V. Carocha, J. Paiva, D. Kudrna, S. Brommonschenkel, G. Pasquali, M. Byrne, P. Rigault, J. Tibbits, A. Spokevicius, Rebecca C. Jones, D. Steane, R. Vaillancourt, B. Potts, F. Joubert, K. Barry, G. Pappas, S. Strauss, P. Jaiswal, J. Grima-Pettenati, J. Salse, Y. Van de Peer, D. Rokhsar, J. Schmutz

Nature

DOI

2014

Efficient Purging of Deleterious Mutations in Plants with Haploid Selfing

P. Szövényi, N. Devos, D. Weston, Xiaohan Yang, Zsófia Hock, J. A. Shaw, K. Shimizu, S. McDaniel, A. Wagner

Genome Biology and Evolution

DOI

2014

Engineering crassulacean acid metabolism to improve water-use efficiency

A. Borland, James Hartwell, D. Weston, K. Schlauch, T. Tschaplinski, G. Tuskan, Xiaohan Yang, J. Cushman

Trends in Plant Science

DOI

2014

Functional Genomics of Drought Tolerance in Bioenergy Crops

Heng-Fu Yin, Chun-Ju Chen, Jun Yang, D. Weston, Jin-Gui Chen, W. Muchero, N. Ye, T. Tschaplinski, S. Wullschleger, Z. Cheng, G. Tuskan, Xiaohan Yang

DOI

2014

Systems and synthetic biology approaches to alter plant cell walls and reduce biomass recalcitrance

U. Kalluri, Heng-Fu Yin, Xiaohan Yang, B. Davison

Plant Biotechnology Journal

DOI

2014

Comparative Genomics of CAM Species

Xiaohan Yang

2014

Synthetic biology as it relates to CAM photosynthesis: challenges and opportunities.

H. DePaoli, A. Borland, G. Tuskan, J. Cushman, Xiaohan Yang

Journal of Experimental Botany

DOI

2013

Informing the improvement and biodesign of crassulacean acid metabolism via system dynamics modelling.

A. Borland, Xiaohan Yang

New Phytologist

DOI

2013

Evolutionary analyses of non-family genes in plants.

Chu-Yu Ye, Ting-Gang Li, Heng-Fu Yin, D. Weston, G. Tuskan, T. Tschaplinski, Xiaohan Yang

The Plant Journal

DOI

2013

Comparative analysis of cation/proton antiporter superfamily in plants.

Chu-Yu Ye, Xiaohan Yang, Xin-Li Xia, W. Yin

Gene

DOI

2012

Initial characterization of shade avoidance response suggests functional diversity between Populus phytochrome B genes.

A. Karve, S. Jawdy, L. Gunter, S. Allen, Xiaohan Yang, G. Tuskan, S. Wullschleger, D. Weston

New Phytologist

DOI

2012

Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness.

D. Weston, D. Pelletier, J. Morrell-Falvey, T. Tschaplinski, S. Jawdy, T. Lu, S. Allen, Sarah J Melton, Madhavi Z. Martin, C. Schadt, A. Karve, Jin-Gui Chen, Xiaohan Yang, M. Doktycz, G. Tuskan

Molecular Plant-Microbe Interactions

DOI

2012

Reference genome sequence of the model plant Setaria

J. Bennetzen, J. Schmutz, Hao Wang, Ryan J. Percifield, Jennifer S Hawkins, A. Pontaroli, Matt C. Estep, Liang Feng, Justin N. Vaughn, J. Grimwood, J. Jenkins, K. Barry, E. Lindquist, U. Hellsten, Shweta Deshpande, Xuewen Wang, Xiao-Min Wu, T. Mitros, J. Triplett, Xiaohan Yang, Chu-Yu Ye, Margarita Mauro-Herrera, Lin Wang, Pinghua Li, Manoj K. Sharma, Rita Sharma, P. Ronald, O. Panaud, E. Kellogg, T. Brutnell, A. Doust, G. Tuskan, D. Rokhsar, K. Devos

Nature Biotechnology

DOI

2011

Discovery and annotation of small proteins using genomics, proteomics, and computational approaches.

Xiaohan Yang, T. Tschaplinski, G. Hurst, S. Jawdy, P. Abraham, P. Lankford, Rachel M. Adams, M. Shah, R. Hettich, E. Lindquist, U. Kalluri, L. Gunter, Christa Pennacchio, G. Tuskan

Genome Research

DOI

2011

Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics.

Xiaohan Yang, Chu-Yu Ye, A. Bisaria, G. Tuskan, U. Kalluri

Plant Science

DOI

2011

Abscisic acid receptors: past, present and future.

Jian-Jun Guo, Xiaohan Yang, D. Weston, Jin-Gui Chen

Journal of Integrative Plant Biology

DOI

2011

MicroSyn: A user friendly tool for detection of microsynteny in a gene family

Bin Cai, Xiaohan Yang, G. Tuskan, Z. Cheng

BMC Bioinformatics

DOI

2011

Genome-wide analysis of the intergenic regions in Arabidopsis thaliana suggests

Xiaohan Yang, C. Winter, Xiu-Ying Xia, Su-Sheng Gan

2011

Comparative physiology and transcriptional networks underlying the heat shock response in Populus trichocarpa, Arabidopsis thaliana and Glycine max.

D. Weston, A. Karve, L. Gunter, S. Jawdy, Xiaohan Yang, S. Allen, S. Wullschleger

Plant, Cell and Environment

DOI

2011

Innovative Biological Solutions to Challenges in Sustainable Biofuels Production

Xiaohan Yang, Ting-Gang Li, D. Weston, A. Karve, J. Labbé, L. Gunter, P. Sukumar, A. Borland, Jay Chen, S. Wullschleger, T. Tschaplinski, G. Tuskan

DOI

2011

The Populus genome sequence.

S. DiFazio, Xiaohan Yang, G. Tuskan, C. P. Joshi

DOI

2011

Eukaryotic initiation factor 6, an evolutionarily conserved regulator of ribosome biogenesis and protein translation

Jian-Jun Guo, Zhao Jin, Xiaohan Yang, Jian-Feng Li, Jin-Gui Chen

Plant Signalling & Behavior

DOI

2011

Comparative analysis of GT14/GT14-like gene family in Arabidopsis, Oryza, Populus, Sorghum and Vitis.

Chu-Yu Ye, Ting-Gang Li, G. Tuskan, T. Tschaplinski, Xiaohan Yang

Plant Science

DOI

2010

Genomic aspects of research involving polyploid plants

Xiaohan Yang, Chu-Yu Ye, Z. Cheng, T. Tschaplinski, S. Wullschleger, W. Yin, Xin-Li Xia, G. Tuskan

Plant Cell Tissue and Organ Culture

DOI

2010

Bioinformatics-Based Identification of Candidate Genes from QTLs Associated with Cell Wall Traits in Populus

P. Ranjan, T. Yin, Xin-Ye Zhang, U. Kalluri, Xiaohan Yang, S. Jawdy, G. Tuskan

Bioenergy Research

DOI

2010

Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium distachyon

Ludmila Tyler, J. Bragg, Jia-Jie Wu, Xiaohan Yang, G. Tuskan, J. Vogel

BMC Genomics

DOI

2010

Genome sequencing and analysis of the model grass Brachypodium distachyon

J. Vogel, D. Garvin, T. Mockler, J. Schmutz, D. Rokhsar, Michael W. Bevan, K. Barry, Susan Lucas, M. Harmon-Smith, Kathleen Lail, H. Tice, J. Grimwood, N. McKenzie, N. Huo, Yong Q. Gu, G. Lazo, Olin D. Anderson, F. You, Ming-Cheng Luo, Jan Dvorak, Jonathan Wright, M. Febrer, D. Idziak, R. Hasterok, E. Lindquist, Mei Wang, Samuel E. Fox, H. Priest, S. Filichkin, S. Givan, D. Bryant, Jeff H. Chang, Haiyan Wu, Wei Wu, An-Ping Hsia, P. Schnable, A. Kalyanaraman, Brad Barbazuk, T. Michael, S. Hazen, J. Bragg, Debbie Laudencia-Chingcuanco, Yiqun Weng, G. Haberer, M. Spannagl, Klaus F. X. Mayer, Thomas Rattei, T. Mitros, Sang-Jik Lee, J. Rose, Lukas A. Mueller, T. York, T. Wicker, J. Buchmann, J. Tanskanen, A. Schulman, H. Gundlach, Michael W. Bevan, A. D. de Oliveira, Luciano da C. Maia, W. Belknap, Ning Jiang, Jinsheng Lai, Liu-Cun Zhu, Jianxin Ma, Cheng Sun, Ellen J. Pritham, Jerome Salse, F. Murat, M. Abrouk, R. Bruggmann, J. Messing, N. Fahlgren, C. Sullivan, James C. Carrington, E. Chapman, Gregory D. May, J. Zhai, Matthias Ganssmann, Sai Guna Ranjan Gurazada, M. German, Blake C. Meyers, P. Green, Ludmila Tyler, Jia-Jie Wu, J. Thomson, Shanyu Chen, Henrik V. Scheller, J. Harholt, P. Ulvskov, Jeffrey A. Kimbrel, L. Bartley, Pei-Jian Cao, Ki-Hong Jung, Manoj K. Sharma, M. Vega-Sanchez, P. Ronald, Christopher Dardick, Stefanie de Bodt, Wim Verelst, D. Inzé, Maren Heese, A. Schnittger, Xiaohan Yang, U. Kalluri, G. Tuskan, Zhi-Hua Hua, R. Vierstra, Yu Cui, S. Ouyang, Qi-Xin Sun, Zhi-Yong Liu, Alper Yilmaz, E. Grotewold, Richard Sibout, Kian Hématy, G. Mouille, H. Höfte, T. Michael, J. Pelloux, D. O'Connor, James C. Schnable, Scott C. Rowe, F. Harmon, Cynthia L. Cass, J. Sedbrook, M. Byrne, S. Walsh, Janet Higgins, Pinghua Li, T. Brutnell, T. Unver, H. Budak, H. Belcram, M. Charles, B. Chalhoub, Ivan Baxter

Nature

DOI

2010

Proteomics of Leaf Tissues from Populus

G. Hurst, Xiaohan Yang, T. Tschaplinski, G. Tuskan, P. Lankford, M. Shah, S. Jawdy, L. Gunter, N. Engle

2009

Genome-enabled Discovery of Carbon Sequestration Genes

G. Tuskan, T. Tschaplinski, U. Kalluri, T. Yin, Xiaohan Yang, Xin-Ye Zhang, N. Engle, P. Ranjan, Manojit M Basu, L. Gunter, S. Jawdy, Madhavi Z. Martin, A. S. Campbell, S. DiFazio, J. Davis, M. Hinchee, Christa Pinnacchio, R. Meilan, V. Busov, S. Strauss

2009

Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom

Zhan-You Xu, Dan-Dan Zhang, Jun Hu, Xin Zhou, Xia Ye, Kristen L. Reichel, Nathan R. Stewart, Ryan D. Syrenne, Xiaohan Yang, Peng Gao, Weibing Shi, Crissa Doeppke, Robert W. Sykes, Jason N Burris, J. Bozell, Max Zong-Ming Cheng, D. Hayes, N. Labbe, Mark F. Davis, C. Stewart, Joshua S. Yuan

BMC Bioinformatics

DOI

2009

Poplar Genomics: State of the Science

Xiaohan Yang, U. Kalluri, S. DiFazio, S. Wullschleger, T. Tschaplinski, Max Zong-Ming Cheng, G. Tuskan

DOI

2009

Genome-wide identification of lineage-specific genes in Arabidopsis, Oryza and Populus.

Xiaohan Yang, S. Jawdy, T. Tschaplinski, G. Tuskan

Genomics

DOI

2008

Microsatellite primer resource for Populus developed from

T. Yin, Xiaohan Yang, L. Gunter, G. Tuskan, S. Wullschleger, Minren Huang, Shu-Xian Li, Xin-Ye Zhang

2008

The F-Box Gene Family Is Expanded in Herbaceous Annual Plants Relative to Woody Perennial Plants1[W][OA]

Xiaohan Yang, U. Kalluri, S. Jawdy, L. Gunter, T. Yin, T. Tschaplinski, D. Weston, P. Ranjan, G. Tuskan

Plant Physiology

DOI

2006

The Endo-β-Mannanase gene families in Arabidopsis, rice, and poplar

Joshua S. Yuan, Xiaohan Yang, Jingru Lai, Hong Lin, Z. Cheng, H. Nonogaki, F. Chen

Functional & Integrative Genomics

DOI

2006

Divergence of the Dof Gene Families in Poplar, Arabidopsis, and Rice Suggests Multiple Modes of Gene Evolution after Duplication1[W]

Xiaohan Yang, G. Tuskan, Z. Cheng

Plant Physiology

DOI

2006

Recent developments in primer design for DNA polymorphism and mRNA profiling in higher plants

Xiaohan Yang, B. Scheffler, L. Weston

Plant Methods

DOI

2006

Recent Developments in Primer Design for DNA Markers in Higher Plants

Xiaohan Yang, B. Scheffler, L. Weston

DOI

2004

SOR1, a gene associated with bioherbicide production in sorghum root hairs.

Xiaohan Yang, B. Scheffler, L. Weston

Journal of Experimental Botany

DOI

2004

Manipulation of Root Hair Development and Sorgoleone Production in Sorghum Seedlings

Xiaohan Yang, Thomas G. Owens, B. Scheffler, L. Weston

Journal of Chemical Ecology

DOI

2003

The role of root exudates and allelochemicals in the rhizosphere

Cécile Bertin, Xiaohan Yang, L. Weston

Plant and Soil

DOI

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