百晓学者学者目录

王平平

助理研究员、博士生导师、教授、硕士生导师,哈尔滨医科大学

精选作品

期刊论文

2026

ScanTCR Enables Early Cancer Detection by Repertoire-Scale Representation of Cancer-Associated T-Cell Receptors in Peripheral Blood

Jinwei Zhang, Yideng Cai, Jinhao Que, Zuxiang Wang, Jing Ma, Yilin Wang, Xiyun Jin, Wenyi Yang, Meng Luo, Zheng Wei, Guangfu Xue, Rongrong Yang, Fenglan Pang, Hui Yi, Wenyang Zhou, Renjie Tan, Pingping Wang, Haoxiu Sun, Zhaochun Xu, Qinghua Jiang

Cancer Research

2026

Multi-layer molecular profiling defines an immune-active colorectal cancer subtype with therapeutic relevance

Miao Zou, Zuxiang Wang, Wenyang Zhou, Guangfu Xue, Hui Yi, Fenglan Pang, Renjie Tan, Zhaochun Xu, Xiyun Jin, Haoxiu Sun, Pingping Wang, Qinghua Jiang

Molecular Therapy — Nucleic Acids

2025

Identifying T cell antigen at the atomic level with graph convolutional network

Jinhao Que, Guangfu Xue, Tao Wang, Xiyun Jin, Zuxiang Wang, Yideng Cai, Wenyi Yang, Meng Luo, Qian Ding, Jinwei Zhang, Yilin Wang, Yuexin Yang, Fenglan Pang, Yi Hui, Zheng Wei, Jun Xiong, Shouping Xu, Lin Yi, Haoxiu Sun, Pingping Wang, Zhaochun Xu, Qinghua Jiang

Nature Communications

2024

Dimension reduction, cell clustering, and cell–cell communication inference for single-cell transcriptomics with DcjComm

Qian Ding, Wenyi Yang, Guangfu Xue, Hongxin Liu, Yideng Cai, Jinhao Que, Xiyun Jin, Meng Luo, Fenglan Pang, Yuexin Yang, Yi Lin, Yusong Liu, Haoxiu Sun, Renjie Tan, Pingping Wang, Zhaochun Xu, Qinghua Jiang

Genome biology

2024

Deciphering cell–cell communication at single-cell resolution for spatial transcriptomics with subgraph-based graph attention network

Wenyi Yang, Pingping Wang, Shouping Xu, Tao Wang, Meng Luo, Yideng Cai, Chang Xu, Guangfu Xue, Jinhao Que, Qian Ding, Xiyun Jin, Yuexin Yang, Fenglan Pang, Boran Pang, Yi Lin, Huan Nie, Zhaochun Xu, Yong Hua Ji, Qinghua Jiang

Nature Communications

2024

Supplementary Figures S1-S8 from The Deep Learning Framework iCanTCR Enables Early Cancer Detection Using the T-cell Receptor Repertoire in Peripheral Blood

Yideng Cai, Meng Luo, Wenyi Yang, Chang Xu, Pingping Wang, Guangfu Xue, Xiyun Jin, Rui Cheng, Jinhao Que, Wenyang Zhou, Boran Pang, Shouping Xu, Yu Li, Qinghua Jiang, Zhaochun Xu

2024

The Deep Learning Framework iCanTCR Enables Early Cancer Detection Using the T-cell Receptor Repertoire in Peripheral Blood

Yideng Cai, Meng Luo, Wenyi Yang, Chang Xu, Pingping Wang, Guangfu Xue, Xiyun Jin, Rui Cheng, Jinhao Que, Wenyang Zhou, Boran Pang, Shouping Xu, Yu Li, Qinghua Jiang, Zhaochun Xu

Cancer Research

2024

Functional requirement of alternative splicing in epithelial-mesenchymal transition of pancreatic circulating tumor

Lixing Xiao, Haoxiu Sun, Rui Cheng, Rongrong Yang, Xiyun Jin, Zhaochun Xu, Yideng Cai, Yuexin Yang, Fenglan Pang, Guangfu Xue, Pingping Wang, Qinghua Jiang, Huan Nie

Molecular Therapy — Nucleic Acids

2023

Single-cell transcriptomics reveals the interaction between peripheral CD4+ CTLs and mesencephalic endothelial cells mediated by IFNG in Parkinson's disease

Shi Yan, Yao Si, Wen-Yang Zhou, Rui Cheng, Pingping Wang, Di Wang, Wen-Yu Ding, Wanying Shi, Qinghua Jiang, Fan Yang, Li-Fen Yao

Comput. Biol. Medicine

2023

An interpretable single-cell RNA sequencing data clustering method based on latent Dirichlet allocation

Qi Yang, Zhao-Chun Xu, Wen-Yang Zhou, Pingping Wang, Qinghua Jiang, Liran Juan

Briefings Bioinform.

2023

Identification of shared characteristics in tumor-infiltrating T cells across 15 cancers.

Xi-Yun Jin, Yi-Deng Cai, Guang-Fu Xue, Jin-Hao Que, Rui Cheng, Yue-Xin Yang, Li-Xing Xiao, Xiaoyu Lin, Chang Xu, Pingping Wang, Zhao-Chun Xu, Huan Nie, Qing-Hua Jiang

Molecular Therapy: Nucleic Acids

2022

Global Characterization of Peripheral B Cells in Parkinson’s Disease by Single-Cell RNA and BCR Sequencing

Pingping Wang, Meng Luo, Wen-Yang Zhou, Xi-Yun Jin, Zhao-Chun Xu, Shi Yan, Yiqun Li, Chang Xu, Rui Cheng, Yan Huang, Xiaoyu Lin, Li-Fen Yao, Huan Nie, Qinghua Jiang

Frontiers in Immunology

2022

MutCov: A pipeline for evaluating the effect of mutations in spike protein on infectivity and antigenicity of SARS-CoV-2

Wen-Yang Zhou, Chang Xu, Meng Luo, Pingping Wang, Zhao-Chun Xu, Guang-Fu Xue, Xi-Yun Jin, Yan Huang, Yiqun Li, Huan Nie, Qinghua Jiang, A. Anashkina

Comput. Biol. Medicine

2022

DeepCCI: a deep learning framework for identifying cell–cell interactions from single-cell RNA sequencing data

Wenyi Yang, Zhao-Chun Xu, Meng Luo, Yi-Deng Cai, Chang Xu, Pingping Wang, Songren Wei, Guang-Fu Xue, Xi-Yun Jin, Rui Cheng, Jin-Hao Que, Wen-Yang Zhou, Feng-Lan Pang, Huan Nie, Qinghua Jiang

bioRxiv

2022

DeepST: identifying spatial domains in spatial transcriptomics by deep learning

Chang Xu, Xi-Yun Jin, Songren Wei, Pingping Wang, Meng Luo, Zhao-Chun Xu, Wenyi Yang, Yi-Deng Cai, Li-Xing Xiao, Xiaoyu Lin, Hongxin Liu, Rui Cheng, Feng-Lan Pang, Rui Chen, Xi Su, Ying Hu, Guohua Wang, Qinghua Jiang

Nucleic Acids Research

2022

Regional transcriptional vulnerability to basal forebrain functional dysconnectivity in mild cognitive impairment patients.

Peng Ren, Wen-Yu Ding, Siyang Li, Guiyou Liu, Meng Luo, Wen-Yang Zhou, Rui Cheng, Yiqun Li, Pingping Wang, Zhi-Peng Li, Li-Fen Yao, Qinghua Jiang, Xia Liang

Neurobiology of Disease

2022

Identification of alternative splicing-derived cancer neoantigens for mRNA vaccine development

Rui Cheng, Zhao-Chun Xu, Meng Luo, Pingping Wang, Huimin Cao, Xi-Yun Jin, Wen-Yang Zhou, Li-Xing Xiao, Qinghua Jiang

Briefings Bioinform.

2022

Network analysis between neuron dysfunction and neuroimmune response based on neural single-cell transcriptome of COVID-19 patients

Xiaoyu Lin, Huan Nie, Ran Tang, Pingping Wang, Xi-Yun Jin, Qinghua Jiang, Fang Han, N. Chen, Yu Li

Comput. Biol. Medicine

2021

COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas

Xian-Wen Ren, W. Wen, Xiao-Ying Fan, W. Hou, B. Su, Pengfei Cai, Jiesheng Li, Yang Liu, F. Tang, Fan Zhang, Yu Yang, Jiangping He, Wenji Ma, Jingjing He, Pingping Wang, Qi-Qi Cao, Fangjin Chen, Yuqing Chen, Xuelian Cheng, Guohong Deng, Xi-Long Deng, Wenyu Ding, Yingmei Feng, R. Gan, Chuang Guo, Weiqiang Guo, Shuai He, Chen Jiang, Juanran Liang, Yiming Li, Jun Lin, Y. Ling, Haofei Liu, Jianwei Liu, Nianping Liu, Shu-Qiang Liu, Meng Luo, Qiang Ma, Q. Song, Wujianan Sun, Gao-Xiang Wang, Feng Wang, Ying Wang, Xiao-Feng Wen, Qian Wu, Gang Xu, Xiaowei Xie, Xin-Xin Xiong, Xudong Xing, Hao Xu, C. Yin, Dong-Dong Yu, Kezhuo Yu, Jin Yuan, Biao Zhang, Peipei Zhang, Tong Zhang, Jin-Cun Zhao, Pei-Ran Zhao, Jian-Feng Zhou, Wei Zhou, Su-Juan Zhong, Xiaosong Zhong, Shu-Ye Zhang, Lin Zhu, P. Zhu, Bin Zou, J. Zou, Z. Zuo, F. Bai, Xi Huang, P. Zhou, Qinghua Jiang, Zhiwei Huang, Jin-Xin Bei, Lai Wei, X. Bian, Xin-Dong Liu, T. Cheng, Xiang-Pan Li, Ping-Sen Zhao, Fu-Sheng Wang, Hong-Yang Wang, Bing Su, Zheng Zhang, Kun Qu, Xiao-Qun Wang, Jie-Kai Chen, R. Jin, Ze-Min Zhang

Cell

2021

Single-cell transcriptome and TCR profiling reveal activated and expanded T cell populations in Parkinson’s disease

Pingping Wang, Li-Fen Yao, Meng Luo, Wen-Yang Zhou, Xi-Yun Jin, Zhao-Chun Xu, Shi Yan, Yiqun Li, Chang Xu, Rui Cheng, Yan Huang, Xiaoyu Lin, Kexin Ma, Huimin Cao, Hongxin Liu, Guang-Fu Xue, Fangzhu Han, Huan Nie, Qinghua Jiang

Cell Discovery

2021

Global characterization of B cell receptor repertoire in COVID-19 patients by single-cell V(D)J sequencing

Xi-Yun Jin, Wen-Yang Zhou, Meng Luo, Pingping Wang, Zhao-Chun Xu, Kexin Ma, Huimin Cao, Chang Xu, Yan Huang, Rui Cheng, Li-Xing Xiao, Xiaoyu Lin, Feng-Lan Pang, Yiqun Li, Huan Nie, Qinghua Jiang

Briefings Bioinform.

2021

Comprehensive analysis of partial methylation domains in colorectal cancer based on single-cell methylation profiles

Yan Huang, Pingping Wang, Wen-Yang Zhou, Meng Luo, Zhao-Chun Xu, Rui Cheng, Chang Xu, Xi-Yun Jin, Yiqun Li, Qinghua Jiang

Briefings Bioinform.

2021

A pan-cancer analysis of alternative splicing of splicing factors in 6904 patients

Rui Cheng, Li-Xing Xiao, Wen-Yang Zhou, Xi-Yun Jin, Zhao-Chun Xu, Chang Xu, Pingping Wang, Meng Luo, Mengyun Wang, Kexin Ma, Huimin Cao, Yan Huang, Xiaoyu Lin, Feng-Lan Pang, Yiqun Li, Qinghua Jiang

Oncogene

2021

Alternative splicing associated with cancer stemness in kidney renal clear cell carcinoma

Li-Xing Xiao, Guoying Zou, Rui Cheng, Pingping Wang, Kexin Ma, Huimin Cao, Wen-Yang Zhou, Xi-Yun Jin, Zhao-Chun Xu, Yan Huang, Xiaoyu Lin, Huan Nie, Qinghua Jiang

BMC Cancer

2021

Identification of potential vaccine targets for COVID‐19 by combining single‐cell and bulk TCR sequencing

Pingping Wang, Zhao-Chun Xu, Wen-Yang Zhou, Xi-Yun Jin, Chang Xu, Meng Luo, Kexin Ma, Huimin Cao, Yan Huang, Xiaoyu Lin, Feng-Lan Pang, Yiqun Li, Qinghua Jiang

Clinical and Translational Medicine

2021

Impact of mutations in SARS-COV-2 spike on viral infectivity and antigenicity

Wen-Yang Zhou, Chang Xu, Pingping Wang, A. S. Anashkina, Qinghua Jiang

Briefings Bioinform.

2021

DLpTCR: an ensemble deep learning framework for predicting immunogenic peptide recognized by T cell receptor

Zhao-Chun Xu, Meng Luo, Weizhong Lin, Guang-Fu Xue, Pingping Wang, Xi-Yun Jin, Chang Xu, Wen-Yang Zhou, Yi-Deng Cai, Wenyi Yang, Huan Nie, Qinghua Jiang

Briefings Bioinform.

2021

N439K Variant in Spike Protein Alter the Infection Efficiency and Antigenicity of SARS-CoV-2 Based on Molecular Dynamics Simulation

Wen-Yang Zhou, Chang Xu, Pingping Wang, Meng Luo, Zhao-Chun Xu, Rui Cheng, Xi-Yun Jin, Yu Guo, Guang-Fu Xue, Liran Juan, A. Anashkina, Huan Nie, Qinghua Jiang

Frontiers in Cell and Developmental Biology

2020

Large-scale single-cell analysis reveals critical immune characteristics of COVID-19 patients

Xiang-Juan Ren, W. Wen, Xiang-Rong Fan, W. Hou, B. Su, Pengfei Cai, Jing Li, Yang Liu, Fu-Chou Tang, Fan Zhang, Ying Yang, J. He, Wei-Rui Ma, Pingping Wang, Q. Cao, F. Chen, Yu-Hong Chen, X. Cheng, Guohong Deng, X. Deng, W. Ding, Y. Feng, R. Gan, Chuang Guo, W. Guo, Su-Hua He, Chen Jiang, Jin-Yi Liang, Ying-Ting Li, Jun Lin, Y. Ling, Hong-Chao Liu, J.-B. Liu, Nianping Liu, Meng Luo, Qiu-Xiang Ma, Q. Song, W. Sun, Gang Wang, F. Wang, Yin-Juan Wang, Xin-Chen Wen, Qian Wu, G. Xu, X. Xie, X. Xiong, X. Xing, H. Xu, C. Yin, D. Yu, Kai-Kai Yu, Ji-Min Yuan, Bin Zhang, Tao Zhang, Jing-Xian Zhao, P. Zhao, Jie-Jun Zhou, W. Zhou, S. Zhong, Xiaosong Zhong, Shu-Tian Zhang, Lian-Bang Zhu, P. Zhu, Bin Zou, J. Zou, Z. Zuo, F. Bai, Xiu-Ting Huang, X. Bian, P. Zhou, Qinghua Jiang, Zhiwei Huang, Jin-Xin Bei, Lai Wei, X. Liu, T. Cheng, Xuedond Li, Hong-Yang Wang, Zhao Zhang, Kun Qu, Xiao-Jue Wang, Jie-Kai Chen, R. Jin

bioRxiv

2020

Association of PTEN Gene SNPs rs2299939 With PFS in Patients With Small Cell Lung Cancer Treated With Early Radiotherapy

Chun-Bo Wang, Depeng Yang, Xiaoqing Zhang, Xiaohan Zhang, Lijun Yang, Pingping Wang, Wen-Yang Zhou, Hua-Xin Li, Yiqun Li, Huan Nie, Yu Li

Frontiers in Genetics

2020

Integrative Analysis for Elucidating Transcriptomics Landscapes of Glucocorticoid-Induced Osteoporosis

Xiao-xia Ying, Xi-Yun Jin, Pingping Wang, Yuzhu He, Hao-Miao Zhang, Xiang Ren, Songling Chai, Wenqi Fu, Pengcheng Zhao, Chen Chen, Guowu Ma, Hui-Ying Liu

Frontiers in Cell and Developmental Biology

2020

Identification of sub-Golgi protein localization by use of deep representation learning features

Zhi-Bin Lv, Pingping Wang, Quan Zou, Qinghua Jiang

Bioinform.

2020

Comprehensive analysis of TCR repertoire in COVID-19 using single cell sequencing

Pingping Wang, Xi-Yun Jin, Wen-Yang Zhou, Meng Luo, Zhao-Chun Xu, Chang Xu, Yiqun Li, Kexin Ma, Huimin Cao, Y. Huang, Guang-Fu Xue, Shuilin Jin, Huan Nie, Qinghua Jiang

Genomics

2020

Single cell RNA and immune repertoire profiling of COVID-19 patients reveal novel neutralizing antibody

Fang Li, Meng Luo, Wen-Yang Zhou, Jin-Liang Li, Xi-Yun Jin, Zhao-Chun Xu, Liran Juan, Zheng Zhang, Yu-Ou Li, Renqiang Liu, Yiqun Li, Chang Xu, Kexin Ma, Huimin Cao, Jing-Wei Wang, Pingping Wang, Z. Bu, Qinghua Jiang

Protein & Cell

2020

Comprehensive Analysis of the Genetic and Epigenetic Mechanisms of Osteoporosis and Bone Mineral Density

Hui Dong, Wen-Yang Zhou, Pingping Wang, Enjun Zuo, Xiao-xia Ying, Songling Chai, Tao Fei, Laidi Jin, Chen Chen, Guowu Ma, Hui-Ying Liu

Frontiers in Cell and Developmental Biology

2020

Comprehensive Analysis of Copy Number Variations in Kidney Cancer by Single-Cell Exome Sequencing

Wen-Yang Zhou, Fan Yang, Zhao-Chun Xu, Meng Luo, Pingping Wang, Yu Guo, Huan Nie, Li-Fen Yao, Qinghua Jiang

Frontiers in Genetics

2019

BIN1 rs744373 variant shows different association with Alzheimer’s disease in Caucasian and Asian populations

Zhi-fa Han, Tao Wang, Rui Tian, Wen-Yang Zhou, Pingping Wang, Peng Ren, Jian Zong, Yang Hu, Shuilin Jin, Qinghua Jiang

BMC Bioinformatics

2019

Computational Methods for Identifying Similar Diseases

Liang Cheng, Hengqiang Zhao, Pingping Wang, Wen-Yang Zhou, Meng Luo, Tianxing Li, Junwei Han, Shu-Lin Liu, Qinghua Jiang

Molecular Therapy: Nucleic Acids

2019

Polygenic Risk Score for Alzheimer’s Disease Is Associated With Ch4 Volume in Normal Subjects

Tao Wang, Zhi-fa Han, Yu Yang, Rui Tian, Wen-Yang Zhou, Peng Ren, Pingping Wang, Jian Zong, Yang Hu, Qinghua Jiang

Frontiers in Genetics

2018

BIN1 rs744373 Variant Is Significantly Associated with Alzheimer's Disease in Caucasian but Not East Asian Populations

Zhi-fa Han, Tao Wang, Rui Tian, Wen-Yang Zhou, Pingping Wang, Peng Ren, Jian Zong, Yang Hu, Shuilin Jin, Qinghua Jiang

International Conference on Intelligent Computing

2018

Parkinson’s disease and Alzheimer’s disease: a Mendelian randomization study

Zhi-fa Han, Rui Tian, Peng Ren, Wen-Yang Zhou, Pingping Wang, Meng Luo, Shuilin Jin, Qinghua Jiang

BMC Medical Genetics

2018

LncRNA2Target v2.0: a comprehensive database for target genes of lncRNAs in human and mouse

Liang Cheng, Pingping Wang, Rui Tian, Song Wang, Qinghua Guo, Meng Luo, Wen-Yang Zhou, Guiyou Liu, Hui-Jie Jiang, Qinghua Jiang

Nucleic Acids Res.

2018

Alzheimer’s Disease Risk Variant rs2373115 Regulates GAB2 and NARS2 Expression in Human Brain Tissues

Guiyou Liu, Tao Wang, Rui Tian, Yang Hu, Zhi-fa Han, Pingping Wang, Wen-Yang Zhou, Peng Ren, Jian Zong, Shuilin Jin, Qinghua Jiang

Journal of Molecular Neuroscience

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