葛芹玉｜东南大学｜学者主页

2026

Phosphorylation-asymmetric recombinase polymerase amplification enables target-directed circularization for ultrasensitive multiplex electrochemical detection of respiratory pathogens

Yemin Han, Haotian Yu, Manman Lv, Mengqing Cheng, Houyang Ge, Song Gao, Lu Yin, Qinyu Ge, Xinping Xu, Yan Huang, Longhua Sun, Zuhong Lu, Quanjun Liu

Microchimica Acta

DOI

2026

A flap-encoded modular and programmable cascade isothermal amplification platform for rapid and sensitive Staphylococcus aureus biosensing

Manman Lv, Yemin Han, Weihao Li, Haotian Yu, Mengqing Cheng, Houyang Ge, Song Gao, Lu Yin, Qinyu Ge, Xinping Xu, Yan Huang, Jing Wang, Longhua Sun, Zuhong Lu, Q L Liu

Microchemical Journal

DOI

2023

单细胞转录组数据中dropout的填补方法

姜超，胡龙飞，徐春祥，葛芹玉，赵祥伟

《生物医学工程学杂志》

2023

Construction of multiplexed transcriptome NGS libraries of microdissected tissue samples based on combinational DNA barcode microbeads

Kaitong Dang, Yue Zhao, Kaiqiang Ye, Yun-Xia Guo, Wenjia Wang, Qinyu Ge, Xiangwei Zhao

Biotechnology Journal

DOI

2023

Guest Editorial: Selected extended papers from the 12th international conference on post‐genomic technologies

Jing Tu, Ling-Zhi Wu, Qinyu Ge

IET Nanobiotechnology

DOI

2023

Single-cell multi-omics sequencing and its application in tumor heterogeneity.

Yuqing Sun, Zhiyu Liu, Yue Fu, Yu-Wei Yang, Junru Lu, Min Pan, Tian Wen, Xueying Xie, Yunfei Bai, Qinyu Ge

Briefings in Functional Genomics

DOI

2023

iATMEcell: identification of abnormal tumor microenvironment cells to predict the clinical outcomes in cancer based on cell-cell crosstalk network

Yu-Qi Sheng, Jia-Shuo Wu, Xiangmei Li, Jiayue Qiu, Ji Li, Qinyu Ge, Liang Cheng, Junwei Han

Briefings Bioinform.

DOI

2023

Integration of single‐cell transcriptome and proteome technologies: Toward spatial resolution levels

Li-Yong He, Wenjia Wang, Kaitong Dang, Qinyu Ge, Xiangwei Zhao

Visual Information Expert Workshop

DOI

2023

Discriminating Single Nucleotide Variations in Solid-State Nanopores by Evaluating the Combination Efficiency between DNA Polymerase and Its Substrate.

Guo-Hao Xi, Lingzhi Wu, Hao Meng, Fu-Yao Li, Qinyu Ge, Jing Tu

Journal of Physical Chemistry B

DOI

2023

Enzyme-free isothermal amplification strategy for the detection of tumor-associated biomarkers: A review

Wenjia Wang, Qinyu Ge, Xiangwei Zhao

Trends in Analytical Chemistry (TrAC)

DOI

2023

Cell-Free DNA Fragmentomics: The Novel Promising Biomarker

Ting Qi, Min Pan, Huajuan Shi, Liangying Wang, Yunfei Bai, Qinyu Ge

International Journal of Molecular Sciences

DOI

2023

Spatial Transcriptome Profiling of Mouse Hippocampal Single Cell Microzone in Parkinson’s Disease

Er-teng Jia, Yu-Qi Sheng, Huajuan Shi, Ying Wang, Ying Zhou, Zhiyu Liu, Ting Qi, Min Pan, Yunfei Bai, Xiangwei Zhao, Qinyu Ge

International Journal of Molecular Sciences

DOI

2023

Transcriptomic profiling of nuclei from PFA-fixed and FFPE brain tissues

Yun-Xia Guo, Junjie Ma, Kaitong Dang, Zheng-Yue Li, Qinyu Ge, Yan Huang, Guang-Hui Wang, Xiangwei Zhao

bioRxiv

DOI

2023

scRNA‐seq data analysis method to improve analysis performance

Junru Lu, Yu-Qi Sheng, Weiheng Qian, Min Pan, Xiangwei Zhao, Qinyu Ge

IET Nanobiotechnology

DOI

2023

Extracellular RNA profiles in non-small cell lung cancer plasma

Yao-Jun Ni, Wenhao Zhang, Guang Mu, Yan Gu, Hong-Chang Wang, Ke Wei, Yang Xia, Xueying Xie, Qinyu Ge, T. Tan, Jun Wang

Journal of Thoracic Disease

DOI

2023

A comprehensive characterization of cell-free RNA in spent blastocyst medium and quality prediction for blastocyst.

Huajuan Shi, Min Pan, Er-teng Jia, Wenxiang Lu, Ying Zhou, Yu-Qi Sheng, Xiangwei Zhao, Lingbo Cai, Qinyu Ge

Clinical science

DOI

2023

Magnetic Bead Spherical Nucleic Acid Microstructure for Reliable DNA Preservation and Repeated DNA Reading.

Peng Shen, Xiao-Jun Qu, Qinyu Ge, Ting Huang, Qingjiang Sun, Zu-Hong Lu

ACS Synthetic Biology

DOI

2022

Sensitive and Low-Bias Transcriptome Sequencing Using Agarose PCR.

Ying Zhou, Er-teng Jia, Yu-Qi Sheng, Y. Qiao, Ying Wang, Huajuan Shi, Zhiyu Liu, Min Pan, Jing Tu, Yunfei Bai, Xiangwei Zhao, Qinyu Ge, Zuhong Lu

ACS Applied Materials and Interfaces

DOI

2022

Extracellular cell-free RNA profile in human large follicles and small follicles

Huajuan Shi, Min Pan, Yu-Qi Sheng, Er-teng Jia, Ying Wang, Juan Dong, J. Tu, Yunfei Bai, Lingbo Cai, Qinyu Ge

Frontiers in Cell and Developmental Biology

DOI

2022

Correction to: Optimization of library preparation based on SMART for ultralow RNA-seq in mice brain tissues

Er-teng Jia, Huajuan Shi, Ying Wang, Ying Zhou, Zhiyu Liu, Min Pan, Yunfei Bai, Xiangwei Zhao, Qinyu Ge

BMC Genomics

DOI

2022

Defining Specific Cell States of MPTP-Induced Parkinson’s Disease by Single-Nucleus RNA Sequencing

Yun-Xia Guo, Junjie Ma, Hao Huang, Jitao Xu, Chao Jiang, Kaiqiang Ye, Ning Chang, Qinyu Ge, Guang-Hui Wang, Xiangwei Zhao

bioRxiv

DOI

2022

Solid-state nanopore analysis on the conformation change of DNA polymerase I induced by a DNA substrate.

Jiye Fu, Linlin Wu, Gang Hu, Fu-Yao Li, Qinyu Ge, Zu-Hong Lu, Jing Tu

In Analysis

DOI

2022

Analysis approaches for the identification and prediction of N6-methyladenosine sites

Yu-Wei Yang, Zhiyu Liu, Junru Lu, Yuqing Sun, Yue Fu, Min Pan, Xueying Xie, Qinyu Ge

Epigenetics

DOI

2022

Cerasome Spherical Nucleic Acid Nanostructure-Based AND Logic Gate-Guided Dual-DNAzyme Walker for Accurate Cancer Cell Identification

Peng Shen, Qinyu Ge, Yihan Zhao, Mingsong Zhu, Ting Huang, Qingjiang Sun

ACS Applied Nano Materials

DOI

2022

Mutational profiling of circulating tumor DNA and clinical characteristics in lymphoma: Based on next generation sequencing

Yue Hou, Jie Zi, Shuo Liu, Qinyu Ge, Z. Ge

Molecular Carcinogenesis

DOI

2022

Prediction of Time-Series Transcriptomic Gene Expression Based on Long Short-Term Memory with Empirical Mode Decomposition

Ying Zhou, Er-teng Jia, Huajuan Shi, Zhiyu Liu, Yu-Qi Sheng, Min Pan, Jing Tu, Qinyu Ge, Zuhong Lu

International Journal of Molecular Sciences

DOI

2021

Low bias multiple displacement amplification with confinement effect based on agarose gel

Ying Zhou, Er-teng Jia, Y. Qiao, Huajuan Shi, Zhiyu Liu, Min Pan, Xiangwei Zhao, Yunfei Bai, Qinyu Ge

Analytical and Bioanalytical Chemistry

DOI

2021

CircRNA expression profiling of PBMCs from patients with hepatocellular carcinoma by RNA-sequencing

Zhi-Yi Han, Wen-Chi Feng, Rui Hu, Qinyu Ge, Xin-Feng Sun, Wen-Feng Ma, Wei Zhang, Shao-Yong Xu, Bo-Lin Zhan, Laiping Zhang, Qun Li, Xiao-Zhou Zhou

Experimental and Therapeutic Medicine

DOI

2021

Comparative analysis of circular RNA enrichment methods

Huajuan Shi, Ying Zhou, Er-teng Jia, Zhiyu Liu, Min Pan, Yunfei Bai, Xiangwei Zhao, Qinyu Ge

RNA Biology

DOI

2021

Retraction Note to: CiRS-126 inhibits proliferation of ovarian granulosa cells through targeting the miR-21-PDCD4-ROS axis in a polycystic ovarian syndrome model

Jia-Feng Lu, Ying Xue, Yuhang Wang, Yang Ding, Qinyan Zou, Min Pan, L. Qiao, Chun-Hua Zhang, Qinyu Ge, Ting Wang, Hong Li

Cell and Tissue Research

DOI

2021

Optimization of library preparation based on SMART for ultralow RNA-seq in mice brain tissues

Er-teng Jia, Huajuan Shi, Ying Wang, Ying Zhou, Zhiyu Liu, Min Pan, Yunfei Bai, Xiangwei Zhao, Qinyu Ge

BMC Genomics

DOI

2021

Effects of brain tissue section processing and storage time on gene expression.

Er-teng Jia, Ying Zhou, Huajuan Shi, Min Pan, Xiangwei Zhao, Qinyu Ge

Analytica Chimica Acta

DOI

2021

Identification of full-length circular nucleic acids using long-read sequencing technologies.

Wenxiang Lu, Kequan Yu, Xiaohan Li, Qinyu Ge, Ge-Yu Liang, Yunfei Bai

In Analysis

DOI

2021

Bias in RNA-seq Library Preparation: Current Challenges and Solutions

Huajuan Shi, Ying Zhou, Er-teng Jia, Min Pan, Yunfei Bai, Qinyu Ge

BioMed Research International

DOI

2021

The integrity of cfDNA in follicular fluid and spent medium from embryo culture is associated with embryo grade in patients undergoing in vitro fertilization

Min Pan, Huajuan Shi, Zhiyu Liu, Juan Dong, Lingbo Cai, Qinyu Ge

Journal of Assisted Reproduction and Genetics

DOI

2021

Integrity of cell‐free DNA in maternal plasma extracellular vesicles as a potential biomarker for non‐invasive prenatal testing

Min Pan, Jia-Feng Lu, Zhiyu Liu, Huajuan Shi, Yunfei Bai, Ping-Sheng Chen, Qinyu Ge

International journal of gynaecology and obstetrics: the official organ of the International Federation of Gynaecology and Obstetrics

DOI

2020

RETRACTED ARTICLE: CiRS-126 inhibits proliferation of ovarian granulosa cells through targeting the miR-21-PDCD4-ROS axis in a polycystic ovarian syndrome model

Jia-Feng Lu, Ying Xue, Yuhang Wang, Yang Ding, Qinyan Zou, Min Pan, L. Qiao, Chun-Hua Zhang, Qinyu Ge, Ting Wang, Hong Li

Cell and Tissue Research

DOI

2020

Liposomal Spherical Nucleic Acid Scaffolded Site-Selective Hybridization of Nanoparticles for Visual Detection of MicroRNAs.

Peng Shen, Guihong Zhao, Yu-Qian Liu, Qinyu Ge, Qing-Jiang Sun

ACS Applied Bio Materials

DOI

2020

Transcriptomic Profiling of Circular RNA in Different Brain Regions of Parkinson’s Disease in a Mouse Model

Er-teng Jia, Ying Zhou, Zhiyu Liu, Liujing Wang, Tinglan Ouyang, Min Pan, Yunfei Bai, Qinyu Ge

International Journal of Molecular Sciences

DOI

2020

Plasma RNA sequencing of extracellular RNAs reveals potential biomarkers for non-small cell lung cancer.

Liujing Wang, Jun Wang, Er-teng Jia, Zhiyu Liu, Qinyu Ge, Xiangwei Zhao

Clinical Biochemistry

DOI

2020

Encoding Method of Single-cell Spatial Transcriptomics Sequencing

Ying Zhou, Er-teng Jia, Min Pan, Xiangwei Zhao, Qinyu Ge

International Journal on Biological Sciences

DOI

2020

Identifying disease-associated signaling pathways through a novel effector gene analysis

Zhenshen Bao, Bing Zhang, Li Li, Qinyu Ge, Wanjun Gu, Yunfei Bai

PeerJ

DOI

2020

Signaling Pathway Analysis Combined With the Strength Variations of Interactions Between Genes Under Different Conditions

Zhenshen Bao, Yi-Hua Zhu, Qinyu Ge, Wanjun Gu, Xian-Jun Dong, Yunfei Bai

IEEE Access

DOI

2020

The fragmentation patterns of maternal plasma cell‐free DNA and its applications in non‐invasive prenatal testing

Min Pan, Ping-Sheng Chen, Jia-Feng Lu, Zhiyu Liu, Er-teng Jia, Qinyu Ge

Prenatal Diagnosis

DOI

2019

Expression And Biological Interaction Network Of RHOC For Hepatic Carcinoma With Metastasis In PBMC Samples

Yan-Ting Shen, Lu-Ping Bu, Rui Li, Zhen-Zhu Chen, Fei Tian, Qinyu Ge

OncoTargets and Therapy

DOI

2019

MiR-486-5p Serves as a Good Biomarker in Nonsmall Cell Lung Cancer and Suppresses Cell Growth With the Involvement of a Target PIK3R1

Fei Tian, Jun Wang, Tinglan Ouyang, Na Lu, Jia-Feng Lu, Yan-Ting Shen, Yunfei Bai, Xueying Xie, Qinyu Ge

Frontiers in Genetics

DOI

2019

gwSPIA: Improved Signaling Pathway Impact Analysis With Gene Weights

Zhenshen Bao, Yi-Hua Zhu, Qinyu Ge, Wanjun Gu, Xian-Jun Dong, Yunfei Bai

IEEE Access

DOI

2019

MicroRNA Detection Specificity: Recent Advances and Future Perspective.

Tinglan Ouyang, Zhiyu Liu, Zhi-Yi Han, Qinyu Ge

Analytical Chemistry

DOI

2019

Technical progress in circulating tumor DNA analysis using next generation sequencing.

Yunfei Bai, Zexin Wang, Zhiyu Liu, Ge-Yu Liang, Wanjun Gu, Qinyu Ge

Molecular and Cellular Probes

DOI

2019

Evaluating heteroplasmic variations of the mitochondrial genome from whole genome sequencing data.

Meng-Qin Duan, Liang Chen, Qinyu Ge, Na Lu, Jun-Ji Li, Xuan Pan, Y. Qiao, Jing Tu, Zu-Hong Lu

Gene

DOI

2019

Oncogenesis of CRLF2 Overexpression and Effect of JAK2 Inhibitor in CRLF2 Overexpressed B-Cell Acute Lymphoblastic Leukemia

Yan Gu, Chunhua Song, S. Dovat, Qing-Long Guo, Qinyu Ge, Z. Ge

Blood

DOI

2019

Nanoscale Observation of Conformational Transformation of DNA Polymerase via In-Situ Liquid-Cell Transmission Electron Microscopy.

Xiao Xie, Jing Tu, Qinyu Ge, Zu-Hong Lu, Li-Tao Sun

Journal of Biomedical Nanotechnology

DOI

2019

Transcriptomic profiling of differentially expressed genes and related pathways in different brain regions of Parkinson’s disease

Qinyu Ge, Er-teng Jia, Min Pan, Zhiyu Liu, Ying Zhou, Xiangwei Zhao, Jian Dong, Yunfei Bai

DOI

2019

Analysis of genome-wide in cell free DNA methylation: progress and prospect.

Zhiyu Liu, Zexin Wang, Er-teng Jia, Tinglan Ouyang, Min Pan, Jia-Feng Lu, Qinyu Ge, Yunfei Bai

In Analysis

DOI

2018

Aberrant ARID5B expression and its association with Ikaros dysfunction in acute lymphoblastic leukemia

Z. Ge, Q. Han, Yan Gu, Qinyu Ge, Jin-Long Ma, Justin Sloane, Guofeng Gao, K. Payne, L. Szekely, Chunhua Song, S. Dovat

Oncogenesis

DOI

2018

Plant homeodomain finger protein 2 as a novel IKAROS target in acute lymphoblastic leukemia.

Z. Ge, Yan Gu, Q. Han, Justin Sloane, Qinyu Ge, Goufeng Gao, Jin-Long Ma, Hui-Hui Song, Jiao-Jiao Hu, Bao-An Chen, S. Dovat, Chunhua Song

Epigenomics

DOI

2018

Impact of RNA integrity and blood sample storage conditions on the gene expression analysis

Yan-Ting Shen, Rui Li, Fei Tian, Zhen-Zhu Chen, Na Lu, Yunfei Bai, Qinyu Ge, Zu-Hong Lu

OncoTargets and Therapy

DOI

2018

Accurate and sensitive single-cell-level detection of copy number variations by micro-channel multiple displacement amplification (μcMDA).

Jun-Ji Li, Na Lu, Yuhan Tao, Meng-Qin Duan, Y. Qiao, Yuming Xu, Qinyu Ge, Chang-Wei Bi, Jiye Fu, Jing Tu, Zu-Hong Lu

Nanoscale

DOI

2018

Ligation-Rolling Circle Amplification on Quantum Dot-Encoded Microbeads for Detection of Multiplex G-Quadruplex-Forming Sequences.

Xiao-Jun Qu, Fei-Ka Bian, Qing-Sheng Guo, Qinyu Ge, Qing-Jiang Sun, Xue-Bin Huang

Analytical Chemistry

DOI

2017

Construction and optimization of an efficient breathing-based isothermal emulsion amplification method.

Yan-Ting Shen, Fei Tian, Jing Tu, Rui Li, Zhen-Zhu Chen, Yunfei Bai, Qinyu Ge, Zu-Hong Lu

Analytica Chimica Acta

DOI

2017

Potential Diagnostic Power of Blood Circular RNA Expression in Active Pulmonary Tuberculosis

Z. Qian, Hui Liu, Musheng Li, Junchao Shi, Na Li, Yao Zhang, Xiaojie Zhang, Jing-Zhu Lv, Xueying Xie, Yunfei Bai, Qinyu Ge, Eun-A Ko, Hai-Yang Tang, Ting Wang, Xiao-Jing Wang, Zhaohua Wang, Tong Zhou, Wanjun Gu

EBioMedicine

DOI

2017

Screening effective differential expression genes for hepatic carcinoma with metastasis in the peripheral blood mononuclear cells by RNA-seq

Yan-Ting Shen, Lu-Ping Bu, Rui Li, Zhen-Zhu Chen, Fei Tian, Na Lu, Qinyu Ge, Yunfei Bai, Zu-Hong Lu

OncoTarget

DOI

2017

1D-Reactor Decentralized MDA for Uniform and Accurate Whole Genome Amplification.

Jun-Ji Li, Na Lu, Xulian Shi, Y. Qiao, Liang Chen, Meng-Qin Duan, Yong Hou, Qinyu Ge, Yuhan Tao, Jing Tu, Zu-Hong Lu

Analytical Chemistry

DOI

2017

MDA in Capillary for Whole Genome Amplification

Jun-Ji Li, Na Lu, Xulian Shi, Y. Qiao, Liang Chen, Meng-Qin Duan, Yong Hou, Qinyu Ge, Yuhan Tao, Jing Tu, Zu-Hong Lu

2017

Evaluation of Barcodes Reveals Ligation Biases between the Terminal Bases

Jing Tu, Na Lu, Qinyu Ge, Zu-Hong Lu

DOI

2017

No Significant Difference between Plasma miRNAs and Plasma-Derived Exosomal miRNAs from Healthy People

Fei Tian, Yan-Ting Shen, Zhen-Zhu Chen, Rui Li, Qinyu Ge

BioMed Research International

DOI

2016

高选择性和高灵敏度的microRNA检测技术的研究进展

陈珍珠，李蕊，田飞，沈彦婷，葛芹玉

《生物技术通报》

2016

抑郁症相关基因甲基化的研究进展

李蕊，陈珍珠，沈彦婷，田飞，葛芹玉

《生命的化学》

2016

Aberrant miR-181b-5p and miR-486-5p expression in serum and tissue of non-small cell lung cancer.

Fei Tian, Yan-Ting Shen, Zhen-Zhu Chen, Rui Li, Jia-Feng Lu, Qinyu Ge

Gene

DOI

2016

Ikaros regulation of the BCL6/BACH2 axis and its clinical relevance in acute lymphoblastic leukemia

Z. Ge, Xi-Lian Zhou, Yan Gu, Q. Han, Jian-Yong Li, Bao-An Chen, Qinyu Ge, Elanora Dovat, Jonathon L. Payne, Tianyu Sun, Chunhua Song, S. Dovat

OncoTarget

DOI

2016

Placenta-Specific Circulating MicroRNAs and Their Variants as Potential Biomarkers for Preeclampsia

Jia-Feng Lu, Qi Yang, Hai-Ling Li, Qinyu Ge, You-Xia Zhou, Zuhong Lu

DOI

2016

Ratiometric Quantum Dot-Ligand System Made by Phase Transfer for Visual Detection of Double-Stranded DNA and Single-Nucleotide Polymorphism.

Yu-Qian Liu, Ming-Fu Ye, Qinyu Ge, Xiao-Jun Qu, Qing-Sheng Guo, Xian-Yun Hu, Qing-Jiang Sun

Analytical Chemistry

DOI

2016

Differentially Expressed miRNAs in Tumor, Adjacent, and Normal Tissues of Lung Adenocarcinoma

Fei Tian, Rui Li, Zhen-Zhu Chen, Yan-Ting Shen, Jia-Feng Lu, Xueying Xie, Qinyu Ge

BioMed Research International

DOI

2016

うつ病に関連する遺伝子のメチル化の研究の進歩【JST・京大機械翻訳】

Rui Li, Zhen-Zhu Chen, Yan-Ting Shen, Fei Tian, Qinyu Ge

2015

Amplification-based method for microRNA detection.

Yan-Ting Shen, Fei Tian, Zhen-Zhu Chen, Rui Li, Qinyu Ge, Zu-Hong Lu

Biosensors & bioelectronics

DOI

2015

Characterization of microRNA transcriptome in tumor, adjacent, and normal tissues of lung squamous cell carcinoma.

Jun Wang, Zhi Li, Qinyu Ge, Weibing Wu, Quan Zhu, Jin-Hua Luo, Liang Chen

Journal of Thoracic and Cardiovascular Surgery

DOI

2015

MicroRNA heterogeneity in endometrial cancer cell lines revealed by deep sequencing

Jia-Feng Lu, Xue-Li Zhang, Rong Zhang, Qinyu Ge

Oncology Letters

DOI

2015

Profiling circulating microRNAs in maternal serum and plasma

Qinyu Ge, Yan-Ting Shen, Fei Tian, Jia-Feng Lu, Yunfei Bai, Zu-Hong Lu

Molecular Medicine Reports

DOI

2015

Profiling maternal plasma microRNA expression in early pregnancy to predict gestational diabetes mellitus

Yanan Zhu, Fei Tian, Hai-Ling Li, You-Xia Zhou, Jia-Feng Lu, Qinyu Ge

International journal of gynaecology and obstetrics: the official organ of the International Federation of Gynaecology and Obstetrics

DOI

2015

Deregulated microRNA species in the plasma and placenta of patients with preeclampsia.

Sheng Yang, Hai-Ling Li, Qinyu Ge, Li Guo, F. Chen

Molecular Medicine Reports

DOI

2014

A universal linker-RT PCR based quantitative method for the detection of circulating miRNAs

Qinyu Ge, Fei Tian, You-Xia Zhou, Yanan Zhu, Jia-Feng Lu, Yunfei Bai, Zu-Hong Lu

DOI

2014

The RNA expression signature of the HepG2 cell line as determined by the integrated analysis of miRNA and mRNA expression profiles.

Yunfei Bai, Ying Xue, Xueying Xie, Tong Yu, Yi-Hua Zhu, Qinyu Ge, Zu-Hong Lu

Gene

DOI

2014

Differential expression of circulating miRNAs in maternal plasma in pregnancies with fetal macrosomia

Qinyu Ge, Yanan Zhu, Hai-Ling Li, Fei Tian, Xueying Xie, Yunfei Bai

International Journal of Molecular Medicine

DOI

2014

miRNA in Plasma Exosome is Stable under Different Storage Conditions

Qinyu Ge, You-Xia Zhou, Jia-Feng Lu, Yunfei Bai, Xueying Xie, Zu-Hong Lu

Molecules

DOI

2014

Fluorescent recognition of deoxyribonucleic acids by a quantum dot/meso-tetrakis(N-methylpyridinium-4-yl)porphyrin complex based on a photo induced electron-transfer mechanism.

Kao Zhu, Xian-Yun Hu, Qinyu Ge, Qing-Jiang Sun

Analytica Chimica Acta

DOI

2013

Quantification of Maternal Serum Cell-Free Fetal DNA in Early-Onset Preeclampsia

Hong Yu, Yan-Ting Shen, Qinyu Ge, You-Ji He, Dong-Yan Qiao, M. Ren, Jian-Qiong Zhang

International Journal of Molecular Sciences

DOI

2013

Identification and characterization of novel microRNA candidates from deep sequencing.

Qian Wu, Chao Wang, Li Guo, Qinyu Ge, Zu-Hong Lu

Clinica chimica acta; international journal of clinical chemistry

DOI

2013

Maternal Plasma miRNAs Expression in Preeclamptic Pregnancies

Hai-Ling Li, Qinyu Ge, Li Guo, Zu-Hong Lu

BioMed Research International

DOI

2012

Tracking miRNA precursor metabolic products and processing sites through completely analyzing high-throughput sequencing data

Li Guo, Hai-Ling Li, Jia-Feng Lu, Qi Yang, Qinyu Ge, Wanjun Gu, Yunfei Bai, Zu-Hong Lu

Molecular Biology Reports

DOI

2012

Structure-function relationships of three kinds of immobilized DNA probes in the discrimination abilities of single nucleotide variation.

Yunfei Bai, Qin Han, D. Lin, Junfeng Luo, Jing Tu, Qinyu Ge, Zu-Hong Lu

Journal of Nanoscience and Nanotechnology

DOI

2012

A comprehensive survey of maternal plasma miRNAs expression profiles using high-throughput sequencing.

Hai-Ling Li, Li Guo, Qian Wu, Jia-Feng Lu, Qinyu Ge, Zu-Hong Lu

Clinica chimica acta; international journal of clinical chemistry

DOI

2012

Sequencing the miRNAs in maternal plasma from women before and after parturition.

Min Pan, Qinyu Ge, Hai-Ling Li, Qi Yang, Jia-Feng Lu, Ding-Dong Zhang, Zu-Hong Lu

Journal of Nanoscience and Nanotechnology

DOI

2012

Analysis of serum genome-wide microRNAs for breast cancer detection.

Qian Wu, Chao Wang, Zu-Hong Lu, Li Guo, Qinyu Ge

Clinica chimica acta; international journal of clinical chemistry

DOI

2012

Pair-barcode high-throughput sequencing for large-scale multiplexed sample analysis

Jing Tu, Qinyu Ge, Shengqin Wang, Lei Wang, Bei-Li Sun, Qi Yang, Yunfei Bai, Zuhong Lu

BMC Genomics

DOI

2012

Consistent isomiR expression patterns and 3′ addition events in miRNA gene clusters and families implicate functional and evolutionary relationships

Li Guo, Hai-Ling Li, Ting-Ming Liang, Jia-Feng Lu, Qi Yang, Qinyu Ge, Zu-Hong Lu

Molecular Biology Reports

DOI

2012

Genome-Wide Survey of MicroRNA-Transcription Factor Rel/NF- κ B Feed-Forward Regulatory Circuits in Human

Yunfei Bai, D. Lin, Qin Han, Wanjun Gu, Qinyu Ge, Zu-Hong Lu

DOI

2011

胰岛素样生长因子结合蛋白3在宫内生长受限儿中的甲基化研究

苏爱玲，蒋犁，葛芹玉

《中国当代儿科杂志》

2011

Next generation sequencing, an effective method for genomic profiling of circulating miRNA

Hai-Ling Li, Zu-Hong Lu, Li Guo, Qian Wu, Qinyu Ge, Jia-Feng Lu

DOI

2011

Different Expression of RNA-binding Protein IMP3 in Breast Cancer

Qinyu Ge

2011

c-Jun binding site identification in K562 cells.

Min-Li Li, Qinyu Ge, Wei Wang, Jin-Ke Wang, Zuhong Lu

Journal of genetics and genomics = Yi chuan xue bao

DOI

2011

Next-Generation Sequencing of MicroRNAs for Breast Cancer Detection

Qian Wu, Zu-Hong Lu, Hai-Ling Li, Jia-Feng Lu, Li Guo, Qinyu Ge

Journal of Biomedicine and Biotechnology

DOI

2011

Sequencing circulating miRNA in maternal plasma with modified library preparation.

Qinyu Ge, Hai-Ling Li, Qi Yang, Jia-Feng Lu, Jing Tu, Yunfei Bai, Zu-Hong Lu

Clinica chimica acta; international journal of clinical chemistry

DOI

2011

Characterization of maternal plasma miRNAs expression profile by SOLiD sequencing

Hai-Ling Li, Zu-Hong Lu, Qinyu Ge, Qian Wu, Li Guo, Jia-Feng Lu

Proceedings 2011 International Conference on Human Health and Biomedical Engineering

DOI

2011

A Comprehensive Survey of miRNA Repertoire and 3′ Addition Events in the Placentas of Patients with Pre-Eclampsia from High-Throughput Sequencing

Li Guo, Qi Yang, Jia-Feng Lu, Hai-Ling Li, Qinyu Ge, Wanjun Gu, Yunfei Bai, Zu-Hong Lu

PLoS ONE

DOI

2011

Expression analysis of Mirna Isomirs from deep sequencing data

Qi Yang, Jia-Feng Lu, Shengqin Wang, Qinyu Ge, Zu-Hong Lu

International Symposium on Bioelectronics and Bioinformations 2011

DOI

2011

Particle capable of performing mono-molecular nucleic acid amplification and preparation method as well as application thereof

Qi Yang, Jing Tu, Min Pan, Qinyu Ge, Zu-Hong Lu

2011

Discrimination of single nucleotide mutation by using a new class of immobilized shared-stem double-stranded DNA probes.

Yunfei Bai, D. Lin, Qin Han, Y. Jia, Jing Tu, Junfeng Luo, Qinyu Ge, Ding-Dong Zhang, Zu-Hong Lu

Journal of Biomedical Nanotechnology

DOI

2011

2-Color encoding solid phase minisequencing.

Jing Tu, Yunfei Bai, Qinyu Ge, Qi Yang, Zu-Hong Lu

Journal of Nanoscience and Nanotechnology

DOI

2011

An Emulsion Based Microarray Method to Detect the Toxin Genes of Toxin-Producing Organisms

Ying Wang, Jia-Feng Lu, Qi Yang, Yunfei Bai, Qinyu Ge

Molecules

DOI

2011

Application of next-generation sequencing technology to profile the circulating microRNAs in the serum of preeclampsia versus normal pregnant women.

Qi Yang, Jia-Feng Lu, Shengqin Wang, Hai-Lin Li, Qinyu Ge, Zu-Hong Lu

Clinica chimica acta; international journal of clinical chemistry

DOI

2010

高通量DNA测序技术及其应用进展

于聘飞，王英，葛芹玉

《南京晓庄学院学报》

2010

High-fluxed DNA Sequencing Technology and Its Application Development

Qinyu Ge

2010

Global analysis of in vivo EGR1‐binding sites in erythroleukemia cell using chromatin immunoprecipitation and massively parallel sequencing

Chao Tang, Xiaolong Shi, Wei Wang, Dequan Zhou, Jing Tu, Xueying Xie, Qinyu Ge, Pengfeng Xiao, Xiao Sun, Zu-Hong Lu

Electrophoresis

DOI

2010

Detection of multiple SNPs in numerous samples with polyacrylamide gel-based microarray.

Lu Cheng, Bei-Li Sun, Yu Sun, Pengfeng Xiao, Qinyu Ge, Yuanzhuo Zheng, Xiao-Yan Ke, Ying Zhou, Ming-Hao Zhang, Ping Chen, Zuhong Lu

Journal of Nanoscience and Nanotechnology

DOI

2010

Global Egr1-miRNAs Binding Analysis in PMA-Induced K562 Cells Using ChIP-Seq

Wei Wang, Dequan Zhou, Xiaolong Shi, Chao Tang, Xueying Xie, Jing Tu, Qinyu Ge, Zu-Hong Lu

Journal of Biomedicine and Biotechnology

DOI

2009

Association Study between BDNF Gene Polymorphisms and Autism by Three-Dimensional Gel-Based Microarray

Lu Cheng, Qinyu Ge, Pengfeng Xiao, Bei-Li Sun, Xiao-Yan Ke, Yunfei Bai, Zu-Hong Lu

International Journal of Molecular Sciences

DOI

2009

[Study on the genotyping of single nucleotide polymorphisms for a large number of samples by three-dimensional polyacrylamide gel-based microarray method].

Lu Cheng, P. Xiao, Bei-Li Sun, Qinyu Ge, Zuhong Lu

Zhonghua yi xue yi chuan xue za zhi = Zhonghua yixue yichuanxue zazhi = Chinese journal of medical genetics

DOI

2009

Polyacrylamide gel-based microarray: a novel method applied to the association Study between the polymorphisms of BDNF gene and autism.

Lu Cheng, Qinyu Ge, Bei-Li Sun, P. Yu, Xiao-Yan Ke, Zu-Hong Lu

Journal of Biomedical Nanotechnology

DOI

2008

A novel method to quantify local CpG methylation density by regional methylation elongation assay on microarray

Ding-Dong Zhang, Yan Wang, Yunfei Bai, Qinyu Ge, Y. Qiao, Junfeng Luo, Chao Jia, Zu-Hong Lu

BMC Genomics

DOI

2008

Microarray-based Ms-SNuPE: near-quantitative analysis for a high-throughput DNA methylation.

Zhixiang Wu, Junfeng Luo, Qinyu Ge, Zu-Hong Lu

Biosensors & bioelectronics

DOI

2008

Detailed methylation patterns and protein expression profiles of MGMT in colorectal carcinoma surgical margins.

Ding-Dong Zhang, Yunfei Bai, Yan Wang, Junfeng Luo, Qinyu Ge, Y. Qiao, Chao Jia, Zu-Hong Lu

Clinical Biochemistry

DOI

2008

An Emulsion System Based on a Chip Polymerase Chain Reaction

Qinyu Ge, P. Yu, Yunfei Bai, Zu-Hong Lu

Molecules

DOI

2007

应用多重RT-PCR技术检测食管癌患者外周血多种肿瘤基因标志物的研究

杜艳，胡俊，刘全俊，白云飞，葛芹玉，陈宝安，吴平平，黄培林

《现代生物医学进展》

2007

微乳液多重PCR基因芯片法在早孕期无创性胎儿性别诊断中的应用

晏菱，葛芹玉，蒋小青，蒋犁

《现代医学》

2007

Emulsion PCR-based method to detect Y chromosome microdeletions.

Qinyu Ge, Zhaobin Liu, Yunfei Bai, Ding-Dong Zhang, P. Yu, Zu-Hong Lu

Analytical Biochemistry

DOI

2007

Allele-specific extension on microarray for DNA methylation analysis.

Zhixiang Wu, Junfeng Luo, Qinyu Ge, Ding-Dong Zhang, Yan Wang, Chao Jia, Zu-Hong Lu

Analytica Chimica Acta

DOI

2007

Microarray Detection of Fetal DNA Levels in Maternal Plasma

Qinyu Ge, Yunfei Bai, Ding-Dong Zhang, Zu-Hong Lu

DOI

2007

Microarray-in-a-Tube for Detection of Multiple Viruses

Quanjun Liu, Yunfei Bai, Qinyu Ge, Shixin Zhou, Tian Wen, Zu-Hong Lu

Clinical Chemistry

DOI

2006

胎儿核酸检测分析方法的研究

葛芹玉

《东南大学》

2006

Detection of fetal DNA in maternal plasma by microarray coupled with emulsions PCR.

Qinyu Ge, Yunfei Bai, Zhaobin Liu, Quanjun Liu, Ling Yan, Zu-Hong Lu

Clinica chimica acta; international journal of clinical chemistry

DOI

2006

Evaluating the binding affinities of NF-kappaB protein to the single-nucleotide mismatch DNA binding sites by using double-stranded DNA microarray.

Yunfei Bai, Qinyu Ge, Quanjun Liu, Tong-Xiang Li, Jin-Ke Wang, Zu-Hong Lu

Journal of Nanoscience and Nanotechnology

DOI

2006

Microarray-based molecular margin methylation pattern analysis in colorectal carcinoma.

Ding-Dong Zhang, Yunfei Bai, Qinyu Ge, Y. Qiao, Yan Wang, Zao-Zao Chen, Zu-Hong Lu

Analytical Biochemistry

DOI

2005

Investigation of DNA-protein Sequence-Specific Interactions with a ds-DNA Array

Yunfei Bai, Qinyu Ge, Jin-Ke Wang, Tong-Xiang Li, Quanjun Liu, Zu-Hong Lu

Molecules

DOI

2005

A free-labeled method for DNA-binding protein detection using a double-stranded DNA microarray.

Yunfei Bai, Qinyu Ge, Quanjun Liu, Tong-Xiang Li, Jin-Ke Wang, Zu-Hong Lu

Journal of Nanoscience and Nanotechnology

DOI

2005

A semi‐quantitative microarray method to detect fetal RNAs in maternal plasma

Qinyu Ge, Quanjun Liu, Yunfei Bai, Tian Wen, Zu-Hong Lu

Prenatal Diagnosis

DOI

2005

Optimization of on-chip elongation for fabricating double-stranded DNA microarrays.

Yunfei Bai, Qinyu Ge, Jin-Ke Wang, Tong-Xiang Li, Quanjun Liu, Zu-Hong Lu

Colloids and Surfaces B: Biointerfaces

DOI

2005

Detection and analysis system for hybridization images of lab-in-a-tube microarray

Quanjun Liu, Qin-Qin Zhou, Yunfei Bai, Qinyu Ge, Zu-Hong Lu

Chinese science bulletin = Kexue tongbao

DOI

2003

Chip for non-label detecting DNA bindin, preparation and use method thereof

Yunfei Bai, Qinyu Ge, Zu-Hong Lu, Tong-Xiang Li, Jin-Ke Wang

精选作品

期刊论文

Phosphorylation-asymmetric recombinase polymerase amplification enables target-directed circularization for ultrasensitive multiplex electrochemical detection of respiratory pathogens

A flap-encoded modular and programmable cascade isothermal amplification platform for rapid and sensitive Staphylococcus aureus biosensing

单细胞转录组数据中dropout的填补方法

Construction of multiplexed transcriptome NGS libraries of microdissected tissue samples based on combinational DNA barcode microbeads

Guest Editorial: Selected extended papers from the 12th international conference on post‐genomic technologies

Single-cell multi-omics sequencing and its application in tumor heterogeneity.

iATMEcell: identification of abnormal tumor microenvironment cells to predict the clinical outcomes in cancer based on cell-cell crosstalk network

Integration of single‐cell transcriptome and proteome technologies: Toward spatial resolution levels

Discriminating Single Nucleotide Variations in Solid-State Nanopores by Evaluating the Combination Efficiency between DNA Polymerase and Its Substrate.

Enzyme-free isothermal amplification strategy for the detection of tumor-associated biomarkers: A review

Cell-Free DNA Fragmentomics: The Novel Promising Biomarker

Spatial Transcriptome Profiling of Mouse Hippocampal Single Cell Microzone in Parkinson’s Disease

Transcriptomic profiling of nuclei from PFA-fixed and FFPE brain tissues

scRNA‐seq data analysis method to improve analysis performance

Extracellular RNA profiles in non-small cell lung cancer plasma

A comprehensive characterization of cell-free RNA in spent blastocyst medium and quality prediction for blastocyst.

Magnetic Bead Spherical Nucleic Acid Microstructure for Reliable DNA Preservation and Repeated DNA Reading.

Sensitive and Low-Bias Transcriptome Sequencing Using Agarose PCR.

Extracellular cell-free RNA profile in human large follicles and small follicles

Correction to: Optimization of library preparation based on SMART for ultralow RNA-seq in mice brain tissues

Defining Specific Cell States of MPTP-Induced Parkinson’s Disease by Single-Nucleus RNA Sequencing

Solid-state nanopore analysis on the conformation change of DNA polymerase I induced by a DNA substrate.

Analysis approaches for the identification and prediction of N6-methyladenosine sites

Cerasome Spherical Nucleic Acid Nanostructure-Based AND Logic Gate-Guided Dual-DNAzyme Walker for Accurate Cancer Cell Identification

Mutational profiling of circulating tumor DNA and clinical characteristics in lymphoma: Based on next generation sequencing

Prediction of Time-Series Transcriptomic Gene Expression Based on Long Short-Term Memory with Empirical Mode Decomposition

Low bias multiple displacement amplification with confinement effect based on agarose gel

CircRNA expression profiling of PBMCs from patients with hepatocellular carcinoma by RNA-sequencing

Comparative analysis of circular RNA enrichment methods

Retraction Note to: CiRS-126 inhibits proliferation of ovarian granulosa cells through targeting the miR-21-PDCD4-ROS axis in a polycystic ovarian syndrome model

Optimization of library preparation based on SMART for ultralow RNA-seq in mice brain tissues

Effects of brain tissue section processing and storage time on gene expression.

Identification of full-length circular nucleic acids using long-read sequencing technologies.

Bias in RNA-seq Library Preparation: Current Challenges and Solutions

The integrity of cfDNA in follicular fluid and spent medium from embryo culture is associated with embryo grade in patients undergoing in vitro fertilization

Integrity of cell‐free DNA in maternal plasma extracellular vesicles as a potential biomarker for non‐invasive prenatal testing

RETRACTED ARTICLE: CiRS-126 inhibits proliferation of ovarian granulosa cells through targeting the miR-21-PDCD4-ROS axis in a polycystic ovarian syndrome model

Liposomal Spherical Nucleic Acid Scaffolded Site-Selective Hybridization of Nanoparticles for Visual Detection of MicroRNAs.

Transcriptomic Profiling of Circular RNA in Different Brain Regions of Parkinson’s Disease in a Mouse Model

Plasma RNA sequencing of extracellular RNAs reveals potential biomarkers for non-small cell lung cancer.

Encoding Method of Single-cell Spatial Transcriptomics Sequencing

Identifying disease-associated signaling pathways through a novel effector gene analysis

Signaling Pathway Analysis Combined With the Strength Variations of Interactions Between Genes Under Different Conditions

The fragmentation patterns of maternal plasma cell‐free DNA and its applications in non‐invasive prenatal testing

Expression And Biological Interaction Network Of RHOC For Hepatic Carcinoma With Metastasis In PBMC Samples

MiR-486-5p Serves as a Good Biomarker in Nonsmall Cell Lung Cancer and Suppresses Cell Growth With the Involvement of a Target PIK3R1

gwSPIA: Improved Signaling Pathway Impact Analysis With Gene Weights

MicroRNA Detection Specificity: Recent Advances and Future Perspective.

Technical progress in circulating tumor DNA analysis using next generation sequencing.

Evaluating heteroplasmic variations of the mitochondrial genome from whole genome sequencing data.

Oncogenesis of CRLF2 Overexpression and Effect of JAK2 Inhibitor in CRLF2 Overexpressed B-Cell Acute Lymphoblastic Leukemia

Nanoscale Observation of Conformational Transformation of DNA Polymerase via In-Situ Liquid-Cell Transmission Electron Microscopy.

Transcriptomic profiling of differentially expressed genes and related pathways in different brain regions of Parkinson’s disease

Analysis of genome-wide in cell free DNA methylation: progress and prospect.

Aberrant ARID5B expression and its association with Ikaros dysfunction in acute lymphoblastic leukemia

Plant homeodomain finger protein 2 as a novel IKAROS target in acute lymphoblastic leukemia.

Impact of RNA integrity and blood sample storage conditions on the gene expression analysis

Accurate and sensitive single-cell-level detection of copy number variations by micro-channel multiple displacement amplification (μcMDA).

Ligation-Rolling Circle Amplification on Quantum Dot-Encoded Microbeads for Detection of Multiplex G-Quadruplex-Forming Sequences.

Construction and optimization of an efficient breathing-based isothermal emulsion amplification method.

Potential Diagnostic Power of Blood Circular RNA Expression in Active Pulmonary Tuberculosis

Screening effective differential expression genes for hepatic carcinoma with metastasis in the peripheral blood mononuclear cells by RNA-seq

1D-Reactor Decentralized MDA for Uniform and Accurate Whole Genome Amplification.

MDA in Capillary for Whole Genome Amplification

Evaluation of Barcodes Reveals Ligation Biases between the Terminal Bases

No Significant Difference between Plasma miRNAs and Plasma-Derived Exosomal miRNAs from Healthy People

高选择性和高灵敏度的microRNA检测技术的研究进展

抑郁症相关基因甲基化的研究进展

Aberrant miR-181b-5p and miR-486-5p expression in serum and tissue of non-small cell lung cancer.

Ikaros regulation of the BCL6/BACH2 axis and its clinical relevance in acute lymphoblastic leukemia

Placenta-Specific Circulating MicroRNAs and Their Variants as Potential Biomarkers for Preeclampsia

Ratiometric Quantum Dot-Ligand System Made by Phase Transfer for Visual Detection of Double-Stranded DNA and Single-Nucleotide Polymorphism.

Differentially Expressed miRNAs in Tumor, Adjacent, and Normal Tissues of Lung Adenocarcinoma

うつ病に関連する遺伝子のメチル化の研究の進歩【JST・京大機械翻訳】

Amplification-based method for microRNA detection.

Characterization of microRNA transcriptome in tumor, adjacent, and normal tissues of lung squamous cell carcinoma.

MicroRNA heterogeneity in endometrial cancer cell lines revealed by deep sequencing

Profiling circulating microRNAs in maternal serum and plasma