百晓学者学者目录

郑丙莲

博导、教授，复旦大学

精选作品

期刊论文

2026

RNA regulation in plants

Yijun Qi, Yuehua Chen, Hongwei Guo, Huishan Guo, Runlai Hang, Guifang Jia, Yan Li, Beixin Mo, Zhen Wang, Liang Wu, Yiji Xia, Xiaomin Yang, Jixian Zhai, Binglian Zheng, Danmeng Zhu, Xiaofeng Cao

Science China Life Sciences

DOI

2026

Protocol for identification of intronic lariat RNAs by RNA deep sequencing in Arabidopsis thaliana

Haoran Ge, Xiaotuo Zhang, Qi Tang, Binglian Zheng

STAR Protocols

DOI

2026

A DNA break-5mC cycle activates transposable elements in Arabidopsis

Wenjie Liang, Haokai Cao, Chen Zou, Xindong Tong, Y X Ma, Yu Shen, Xue Han, Yilin Zhang, Binglian Zheng, Jinchao Li

Proceedings of the National Academy of Sciences

DOI

2026

Lariat RNA debranching prevents harmful siRNA burst in plants

Qi Tang, Chenxi Ding, Xiaotuo Zhang, Taiyun Wang, Mengjie Zhu, Ruixue Cui, Wenya Yang, Jinbiao Ma, Guodong Ren, Xiaoming Zhang, Binglian Zheng

Science

DOI

2026

Characterization of the miRNA turnover landscape and its regulation in Arabidopsis

Yixiao Fang, Ning Li, Youhong Fan, Z Zhang, Yuchen Cai, Man Guo, Lin Yang, Shipeng Jiang, Binglian Zheng, Jun Mei, Guodong Ren

The Plant Cell

DOI

2026

Maintenance of H3K9me2 heterochromatin in the pollen vegetative nucleus requires ARID1 nuclear body formation

Y ZHAO, Li Li, Qi Tang, Binglian Zheng

The Plant Journal

DOI

2025

植物小RNA的产生、作用方式、功能及在农业中的应用前景

杨怀昊，郑丙莲

《遗传》

DOI

2025

Local trafficking and long-distance transport of small RNAs in plants

Yi Ming Zhao, Binglian Zheng

Journal of genetics and genomics/Journal of Genetics and Genomics

DOI

2025

Debranching enzyme DBR1-mediated lariat RNA turnover requires ALBA proteins in Arabidopsis

Haoran Ge, Qi Tang, Jingjing Wu, Xiaotuo Zhang, Yuxuan Li, W. Qian, Jinbiao Ma, Binglian Zheng

Molecular Cell

DOI

2025

DBR1 orchestrates the fate of lariat RNA: debranching-dependent turnover and function

Qi Tang, Dan Liao, Binglian Zheng

Nucleic Acids Research

DOI

2025

The DNA methylation–demethylation balance prevents development of multiple megaspore mother cells in Arabidopsis

Ting Jiang, Lei Li, Qianqian Hu, Xiangyu Kuang, Lei Zhang, Wenjie Zeng, Daisuke Miki, Binglian Zheng

The Plant Cell

DOI

2025

Cell proliferation suppressor RBR1 interacts with ARID1 to promote pollen mitosis via stabilizing DUO1 in Arabidopsis

Lei Li, Qianqian Hu, Yi Zhao, Ting Jiang, Huaihao Yang, Binglian Zheng

New Phytologist

DOI

2025

Intron‐Derived Lariat RNAs Go Stable

Dan Liao, Binglian Zheng

Wiley Interdisciplinary Reviews - RNA

DOI

2024

A repertoire of intronic lariat RNAs reveals tissue-specific regulation and target mimicry potential in plants

Yong Zhang, Xiaotuo Zhang, Qi Tang, Lei Li, Ting Jiang, Yixiao Fang, Hong Zhang, Jixian Zhai, Guodong Ren, Binglian Zheng

Science China Life Sciences

DOI

2024

Sequestration of DBR1 to stress granules promotes lariat intronic RNAs accumulation for heat-stress tolerance

Chengyun Wu, X. Wang, Yan Li, Weibo Zhen, Chunfei Wang, Xiaoqing Wang, Zhouli Xie, Xiumei Xu, Siyi Guo, José Ramón Botella, Binglian Zheng, Wei Wang, Chun‐Peng Song, Zhubing Hu

Nature Communications

DOI

2024

ARID1 is required to regulate and reinforce H3K9me2 in sperm cells in Arabidopsis

Lei Li, Huaihao Yang, Yi Zhao, Qianqian Hu, Xiaotuo Zhang, Ting Jiang, Hua Liang Jiang, Binglian Zheng

Nature Communications

DOI

2024

Paternal miRNA biogenesis contributes to seed development in Arabidopsis

Huaihao Yang, Youshang Zhao, Zihuan Lin, Ting Jiang, Qianqian Hu, Guodong Ren, Binglian Zheng

Seed Biology

DOI

2022

H3K9 demethylases IBM1 and JMJ27 are required for male meiosis in Arabidopsis thaliana

Jinping Cheng, Linhao Xu, Valentin Bergér, Astrid Bruckmann, Chao Yang, Veit Schubert, Klaus D. Grasser, Arp Schnittger, Binglian Zheng, Hua Liang Jiang

New Phytologist

DOI

2022

Epigenetic Regulation of Megaspore Mother Cell Formation

Ting Jiang, Binglian Zheng

Frontiers in Plant Science

DOI

2022

The plant FYVE domain‐containing protein FREE1 associates with microprocessor components to repress miRNA biogenesis

Hongbo Li, Tingting Li, Yingzhu Li, Haiyan Bai, Yanghuan Dai, Yanglan Liao, Juan Wei, Wenjin Shen, Binglian Zheng, Zhonghui Zhang, Caiji Gao

EMBO Reports

DOI

2022

SICKLE modulates lateral root development by promoting degradation of lariat intronic RNA

Chengyun Wu, Xiaoqing Wang, Weibo Zhen, Yaqing Nie, Yan Li, Penglai Yuan, Qiaoqiao Liu, Siyi Guo, Zhenguo Shen, Binglian Zheng, Zhubing Hu

PLANT PHYSIOLOGY

DOI

2021

Brassinosteroids inhibit miRNA‐mediated translational repression by decreasing AGO1 on the endoplasmic reticulum

Taiyun Wang, Yanhua Zheng, Qi Tang, Songxiao Zhong, Wei Su, Binglian Zheng

Journal of Integrative Plant Biology

DOI

2021

The chromatin remodeling complex imitation of switch controls stamen filament elongation by promoting jasmonic acid biosynthesis in Arabidopsis

Youshang Zhao, Ting Jiang, Lei Li, Xiaotuo Zhang, Tianyu Yang, Cuimei Liu, Jinfang Chu, Binglian Zheng

Journal of genetics and genomics/Journal of Genetics and Genomics

DOI

2020

Heterochromatic silencing is reinforced by ARID1‐mediated small RNA movement in Arabidopsis pollen

Wenye Wu, Lei Li, Yi Zhao, Youshang Zhao, Ting Jiang, Sheila M. McCormick, Binglian Zheng

New Phytologist

DOI

2019

Sigma因子6促进拟南芥MIRNA基因转录

杨天宇，郑丙莲

《复旦学报(自然科学版)》

DOI

2019

The Arabidopsis anaphase‐promoting complex/cyclosome subunit 8 is required for male meiosis

Rongyan Xu, Jing Xu, Liudan Wang, Baixiao Niu, Gregory P. Copenhaver, Hong Mā, Binglian Zheng, Yingxiang Wang

New Phytologist

DOI

2019

Spliceosome disassembly factors ILP1 and NTR1 promote miRNA biogenesis in Arabidopsis thaliana

Junli Wang, Susu Chen, Ning Jiang, Ning Li, Xiaoyan Wang, Zhongpeng Li, Xu Li, Hongtao Liu, Lin Li, Yu Yang, Ting Ni, Chaoyi Yu, Jinbiao Ma, Binglian Zheng, Guodong Ren

Nucleic Acids Research

DOI

2019

Intercellular delivery of small RNAs in plant gametes

Wenye Wu, Binglian Zheng

New Phytologist

DOI

2019

A Comprehensive Map of Intron Branchpoints and Lariat RNAs in Plants

Xiaotuo Zhang, Yong Zhang, Taiyun Wang, Ziwei Li, Jinping Cheng, Haoran Ge, Qi Tang, Kun Chen, Li Liu, Chenyu Lu, Junqiang Guo, Binglian Zheng, Yun Zheng

The Plant Cell

DOI

2019

Anaphase-promoting complex/cyclosome regulates RdDM activity by degrading DMS3 in Arabidopsis

Songxiao Zhong, Yi-Feng Xu, Chaoyi Yu, Xiaotuo Zhang, Lei Li, Haoran Ge, Guodong Ren, Yingxiang Wang, Jinbiao Ma, Yun Zheng, Binglian Zheng

Proceedings of the National Academy of Sciences

DOI

2019

Meiocyte-Specific and AtSPO11-1–Dependent Small RNAs and Their Association with Meiotic Gene Expression and Recombination

Jiyue Huang, Cong Wang, Haifeng Wang, Pingli Lu, Binglian Zheng, Hong Mā, Gregory P. Copenhaver, Yingxiang Wang

The Plant Cell

DOI

2018

蛋白磷酸酶复合体PP4/SMKE1通过拮抗MAPK信号通路去磷酸化HYL1促进植物miRNA产生

Chuanbin Su, Ziwei Li, Jinping Cheng, Lei Li, Songxiao Zhong, Li Liu, Yun Zheng, 郑丙莲

《科学新闻》

2018

Clearance of maternal barriers by paternal miR159 to initiate endosperm nuclear division in Arabidopsis

Youshang Zhao, Songyun Wang, Wenye Wu, Lei Li, Ting Jiang, Binglian Zheng

Nature Communications

DOI

2018

Degradation of unmethylated miRNA/miRNA*s by a DEDDy-type 3′ to 5′ exoribonuclease Atrimmer 2 in Arabidopsis

Xiaoyan Wang, Yuan Wang, Yongchao Dou, Lu Chen, Junli Wang, Ning Jiang, Chunce Guo, Qingqing Yao, Chizao Wang, Lin Liu, Bin Yu, Binglian Zheng, Julia A. Chekanova, Jinbiao Ma, Guodong Ren

Proceedings of the National Academy of Sciences

DOI

2018

jaw-1D: a gain-of-function mutation responsive to paramutation-like induction of epigenetic silencing

Wen Jiang, Zhongfei Li, Xiaozhen Yao, Binglian Zheng, Wen‐Hui Shen, Aiwu Dong

Journal of Experimental Botany

DOI

2018

RNA Immunoprecipitation (RIP) Sequencing of Pri-miRNAs Associated with the Dicing Complex in Arabidopsis

Zi-Wei Li, Song-Xiao Zhong, Wenye Wu, Binglian Zheng

DOI

2017

A lariat-derived circular RNA is required for plant development in Arabidopsis

Jinping Cheng, Yong Zhang, Ziwei Li, Taiyun Wang, Xiaotuo Zhang, Binglian Zheng

Science China Life Sciences

DOI

2017

A reciprocal inhibition between ARID1 and MET1 in male and female gametes in Arabidopsis

Lei Li, Wenye Wu, Youshang Zhao, Binglian Zheng

Journal of Integrative Plant Biology

DOI

2017

The Protein Phosphatase 4 and SMEK1 Complex Dephosphorylates HYL1 to Promote miRNA Biogenesis by Antagonizing the MAPK Cascade in Arabidopsis

Su Chuanbin, Ziwei Li, Jinping Cheng, Lei Li, Songxiao Zhong, Li Liu, Yun Zheng, Binglian Zheng

Developmental Cell

DOI

2017

A reciprocal inhibition between ARID 1 and MET 1 in male and female gametes in Arabidopsis Running title : MET 1 and ARID 1 restrict reciprocally in plant gametes

Lei Li, Wenye Wu, You-Shang Zhao, Binglian Zheng

2016

APETALA 2 antagonizes the transcriptional activity of AGAMOUS in regulating floral stem cells in Arabidopsis thaliana

Zhigang Huang, Ting Shi, Binglian Zheng, Rae Eden Yumul, Xigang Liu, Chenjiang You, Zhihong Gao, Langtao Xiao, Xuemei Chen

New Phytologist

DOI

2016

Intron Lariat RNA Inhibits MicroRNA Biogenesis by Sequestering the Dicing Complex in Arabidopsis

Ziwei Li, Shengpeng Wang, Jinping Cheng, Su Chuanbin, Songxiao Zhong, Qi Liu, Yuda Fang, Yao Yu, Hong Lv, Yun Zheng, Binglian Zheng

PLoS Genetics

DOI

2016

A Model for lariat RNA inhibits miRNA biogenesis in plants.

Zi-Wei Li, Sheng-Peng Wang, Jin-Ping Cheng, Chuan-Bin Su, Song-Xiao Zhong, Qi Liu, Yu-Da Fang, Yao Yu, L. Hong, Yun Zheng, Binglian Zheng

DOI

2016

Characterization of lariat RNAs in plants.

Zi-Wei Li, Sheng-Peng Wang, Jin-Ping Cheng, Chuan-Bin Su, Song-Xiao Zhong, Qi Liu, Yu-Da Fang, Yao Yu, L. Hong, Yun Zheng, Binglian Zheng

DOI

2016

Subcellular localization of DBR1 and lariat RNA.

Zi-Wei Li, Sheng-Peng Wang, Jin-Ping Cheng, Chuan-Bin Su, Song-Xiao Zhong, Qi Liu, Yu-Da Fang, Yao Yu, L. Hong, Yun Zheng, Binglian Zheng

DOI

2016

Over-expression of lariat41 caused reduced miRNA accumulation.

Zi-Wei Li, Sheng-Peng Wang, Jin-Ping Cheng, Chuan-Bin Su, Song-Xiao Zhong, Qi Liu, Yu-Da Fang, Yao Yu, L. Hong, Yun Zheng, Binglian Zheng

DOI

2016

DBR1 is required for miRNA accumulation.

Zi-Wei Li, Sheng-Peng Wang, Jin-Ping Cheng, Chuan-Bin Su, Song-Xiao Zhong, Qi Liu, Yu-Da Fang, Yao Yu, L. Hong, Yun Zheng, Binglian Zheng

DOI

2016

DCL1 and HYL1 are mis-localized in dbr1-2 mutants.

Zi-Wei Li, Sheng-Peng Wang, Jin-Ping Cheng, Chuan-Bin Su, Song-Xiao Zhong, Qi Liu, Yu-Da Fang, Yao Yu, L. Hong, Yun Zheng, Binglian Zheng

DOI

2016

Lariat RNAs competitively inhibit DCL1/HYL1 binding to pri-miRNAs.

Zi-Wei Li, Sheng-Peng Wang, Jin-Ping Cheng, Chuan-Bin Su, Song-Xiao Zhong, Qi Liu, Yu-Da Fang, Yao Yu, L. Hong, Yun Zheng, Binglian Zheng

DOI

2016

Pri-miRNA binding to DCL1 and HYL1 is reduced in dbr1-2.

Zi-Wei Li, Sheng-Peng Wang, Jin-Ping Cheng, Chuan-Bin Su, Song-Xiao Zhong, Qi Liu, Yu-Da Fang, Yao Yu, L. Hong, Yun Zheng, Binglian Zheng

DOI

2015

Small RNAs in pollen

Hui He, Tianyu Yang, Wenye Wu, Binglian Zheng

Science China Life Sciences

DOI

2014

An ARID Domain-Containing Protein within Nuclear Bodies Is Required for Sperm Cell Formation in Arabidopsis thaliana

Binglian Zheng, Hui He, Yanhua Zheng, Wenye Wu, Sheila McCormick

PLoS Genetics

DOI

2013

Cajal Bodies Are Developmentally Regulated during Pollen Development and Pollen Tube Growth in Arabidopsis thaliana

Regina Scarpin, Lorena Sigaut, Lía Isabel Pietrasanta, Sheila M. McCormick, Binglian Zheng, Jorge Prometeo Muschietti

Molecular Plant

DOI

2013

Generation of a luciferase-based reporter for CHH and CG DNA methylation inArabidopsis thaliana

Thanh Theresa Dinh, Michael L O'Leary, So Youn Won, Shengben Li, Lorena Arroyo, Xigang Liu, Andrew Defries, Binglian Zheng, Sean R. Cutler, Xuemei Chen

Silence

DOI

2012

Development of a luciferase-based reporter of transcriptional gene silencing that enables bidirectional mutant screening in Arabidopsis thaliana

So Youn Won, Shengben Li, Binglian Zheng, Yuanyuan Zhao, Dongming Li, Xin Zhao, Huilan Yi, Lei Gao, Thanh Theresa Dinh, Xuemei Chen

Silence

DOI

2011

The role of Mediator in small and long noncoding RNA production in Arabidopsis thaliana

Y. Kim, Binglian Zheng, Yu Yu, S. Won, Bei-Xin Mo, Xue-Mei Chen

EMBO Journal

DOI

2011

The Anaphase-Promoting Complex Is a Dual Integrator That Regulates Both MicroRNA-Mediated Transcriptional Regulation of Cyclin B1 and Degradation of Cyclin B1 during Arabidopsis Male Gametophyte Development[C][W]

Binglian Zheng, Xue-Mei Chen, S. McCormick

The Plant Cell

DOI

2011

Dynamics of histone H3 lysine 27 trimethylation in Plant Development

Binglian Zheng, Xue-Mei Chen

Current opinion in plant biology

DOI

2011

and regulate the cells through in

Lijuan Ji, Xi-Gang Liu, Jun Yan, Wen-ming Wang, Rae Eden Yumul, Yun Ju Kim, Thanh Theresa, Dinh, Jun Liu, Xia Cui, Binglian Zheng, M. Agarwal, Chun-Yan Liu, Xiaofeng Cao, Guiliang, Tang, Xue-Mei Chen

2011

ARGONAUTE10 and ARGONAUTE1 Regulate the Termination of Floral Stem Cells through Two MicroRNAs in Arabidopsis

Lijuan Ji, Xi-Gang Liu, Jun Yan, Wen-ming Wang, Rae Eden Yumul, Y. Kim, T. T. Dinh, Jun Liu, Xia Cui, Binglian Zheng, M. Agarwal, Chun-Yan Liu, Xiao-Feng Cao, G. Tang, Xue-Mei Chen

PLoS Genetics

DOI

2010

Arabidopsis Histidine Kinase CKI1 Acts Upstream of HISTIDINE PHOSPHOTRANSFER PROTEINS to Regulate Female Gametophyte Development and Vegetative Growth[C][W]

Yan Deng, Haili Dong, J. Mu, Bo Ren, Binglian Zheng, Zhendong Ji, Wei-Cai Yang, Yan Liang, Jian-Ru Zuo

The Plant Cell

DOI

2009

Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis.

Binglian Zheng, Zhengming Wang, Sheng-Ben Li, Bin Yu, Jin-Yuan Liu, Xue-Mei Chen

Genes & Development

DOI

2009

Computational prediction of novel non-coding RNAs in Arabidopsis thaliana

Dandan Song, Yang Yang, Bin Yu, Binglian Zheng, Zhidong Deng, Bao-Liang Lu, Xue-Mei Chen, Tao Jiang

BMC Bioinformatics

DOI

2008

The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis

Bin Yu, L. Bi, Binglian Zheng, Lijuan Ji, D. Chevalier, M. Agarwal, Vanitharani Ramachandran, Wan-Xiang Li, Thierry Lagrange, John C. Walker, Xue-Mei Chen

Proceedings of the National Academy of Sciences of the United States of America

DOI

Special Topic: Plant Biology: Chromatin, Small Rna and Signaling Small Rnas in Pollen

Hui He, Tian-Yu Yang, Wenye Wu, Binglian Zheng, H. He, T.-Y. Yang, W.-Y. Wu, Zheng Bl

会议论文

2016

套索RNA作为分子海绵抑制植物miRNA产生

李紫威，王声鹏，程晋萍，苏传斌，钟嵩潇，郑云，郑丙莲

《2016年全国植物生物学大会摘要集》

2013

Nuclear body-localized ARID1 is required for male germline formation in Arabidopsis

Binglian Zheng, Yanhua Zheng, Hui He, Ziwei Li, Sheila McCormick

《第十四届全国植物基因组学大会》

预印本

2022

Spatiotemporal Dynamics of TE and H3K9me2 Reprogramming During Pollen Mitosis Requires an ARID1-Based Heterochromatic Machinery

Lei Li, Xiaotuo Zhang, Yi Zhao, Qianqian Hu, Huaihao Yang, Wenye Wu, Ting Jiang, Youyang Wang, Yong Zhang, Hua Jiang, Binglian Zheng

SSRN Electronic Journal

DOI

2014

Detection of Pol IV/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis

Shaofang Li, Lee E. Vandivier, Bin Tu, Lei Gao, So Youn Won, Shengben Li, Binglian Zheng, Brian D. Gregory, Xuemei Chen

Genome Research

DOI

书籍章节

2021

Identification of Intronic Lariat-Derived Circular RNAs in Arabidopsis by RNA Deep Sequencing

Taiyun Wang, Xiaotuo Zhang, Binglian Zheng

Methods in molecular biology

DOI

研究方向

植物非编码RNA生物学套索RNA、转座子RNA与小RNA代谢功能RNA调控植物生殖发育与免疫

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