张翀｜清华大学｜学者主页

2026

Double-edged sword: Aspergillus flavus as a threat to food safety and a resource for biotechnology.

Sheidu Abdullaziz, Yu-Hui Zhuang, Chong Zhang, Y. Sharif, Muhammed Mustapha Ibrahim, Ismail Sanusi Nassarawa, Hamid Ullah, Xiangyu Chen, R. K. Varshney, Hua Chen, Wei-Jian Zhuang

Biotechnology Advances

DOI

2026

Climate‐Driven Regulatory Plasticity Reshapes Mycotoxin Risk and Control in Food Systems

Sheidu Abdullaziz, Yu-Hui Zhuang, Alhassan Fatima Binta, Votapwa Izhar Oliver, Muhammed Mustapha Ibrahim, Ismail Sanusi Nassarawa, Hamid Ullah, Hua Chen, Chong Zhang, Wei-Jian Zhuang

Comprehensive Reviews in Food Science and Food Safety

DOI

2026

Positional cloning of a peanut CC-NBS-LRR gene, AhRRS6, confers resistance to Ralstonia solanacearum

Huiwen Fu, Yu-Hui Zhuang, Chong Zhang, Shi-Peng Li, Yong-Li Zhang, Wenzhi Lu, Lihui Wang, Sheidu Abdullaziz, Yu-Ting Chen, T. Cai, Qiang Yang, Xiangyu Chen, R. Varshney, Zujian Wu, Hua Chen, Wei-Jian Zhuang

Frontiers in Plant Science

DOI

2026

AhDi19-3B Confers Drought Tolerance in Peanut: Functional Characterization of a Candidate Gene from the Genome-Wide Identified Di19 Family

Yu-Ting Chen, Guangjian Zhonghou, Zelong You, Jingyu Liu, Mingrui Jin, Linlin Shang, Lang Chen, Meijiang Gao, Linyun Wu, Tong Zhan, Yifei Kou, Shubiao Zhang, Yasir Sharif, Chong Zhang

Plant Stress

DOI

2026

Genome-wide identification of the peanut SUT gene family and functional analysis of AhSUT4 in sugar accumulation

T. Cai, Si-Qian Cheng, Yijing Pan, Jin-Feng Huang, Chong Zhang, Hua Chen, Xiangyu Chen, Qiang Yang, Wei-Jian Zhuang, Faqian Xiong, Biao-Jun Ji

Plant Stress

DOI

2026

Synergizing high-level protein productivity with robust physiological traits via multi-scale droplet microfluidics-integrated evolution engineering

Xiaoyu Xu, Xinyu Yu, Xinyu Yu, Xihao Liao, Yujing Tang, Yulu Zhao, Jiacheng Sun, Xue Wang, Xue Wang, Yan Xu, Chong Zhang, Xiaowei Yu, Xiaowei Yu

Chemical Engineering Journal

DOI

2026

High-Throughput Screening of L-Lactic Acid-Hyperproducing Bacillus coagulans Mutants Using an Automated Droplet Microfluidic Platform

Xin Da, Shuang Li, Qingyuan Wang, Xunxun Luo, Dezhi Geng, Xiaojie Guo, Liyan Wang, Dongliang Jiang, Yi Wang, Xin‐Hui Xing, Zhenglian Xue, Chong Zhang

Journal of Visualized Experiments

DOI

2025

基于微流控技术的工程细胞高通量表型测试技术与装备研究进展

李爽，郭肖杰，陈海博，陈思思，笪鑫，李峥辉，刘芹秀，王怡，邢新会，张翀

《中国科学院院刊》，Vol. 40, No. 1

下载原文 DOI

2025

Epigenetic insights into the domestication of tetraploid peanut

Hang Yu, Chong Zhang, Chao Zhang, Yan Shi, Yajie Xue, Liang Xie, Haifeng Wang

Plant Physiology

DOI

2025

A Ralstonia effector RipAU impairs peanut AhSBT1.7 immunity for pathogenicity via AhPME-mediated cell wall degradation.

Kun Chen, Yu-Hui Zhuang, Hua Chen, Taijie Lei, Mengke Li, Shanshan Wang, Lihui Wang, Huiwen Fu, Wenzhi Lu, Abhishek Bohra, Qiao-Qiao Lai, Xiaoling Xu, Vanika Garg, Rutwik Barmukh, Biao-Jun Ji, Chong Zhang, Manish K. Pandey, Rong-Hua Tang, R. Varshney, Wei-Jian Zhuang

The Plant Journal

DOI

2025

GLiDe: a web-based genome-scale CRISPRi sgRNA design tool for prokaryotes

Tongjun Xiang, Huibao Feng, Xin‐Hui Xing, Chong Zhang

BMC Bioinformatics

DOI

2025

The advances of strategies and technologies in high-throughput microbial culturomics

Zheng-Hui Li, Shuang Li, Haibo Chen, Yizhi Ji, Chong Zhang

Biotechnology Advances

DOI

2025

Engineering Methylorubrum extorquens for the Biosynthesis of d -Lactic Acid from Methanol

Hui Zhang, Sisi Chen, Zhe Liu, Song Yang, Yi Wang, Xin‐Hui Xing, Chong Zhang

ACS Sustainable Chemistry & Engineering

DOI

2025

An efficient microbial secretion platform for developing supercharged polypeptides-based functional materials from C2 feedstock

Jiacheng Sun, Xinyu Yu, Jiahe Li, Zhenglian Xue, Kai Liu, Chong Zhang

Chemical Engineering Journal

DOI

2024

合成生物学表型测试生物反应器及其装备化研究进展

郭肖杰，剪兴金，王立言，张翀，邢新会

《合成生物学》

2024

停滞棒杆菌遗传改造工具和启动子文库构建

叶光正，余心宇，林钰宽，蔡友华，邢新会，陈武，薛正莲，张翀

《生物加工过程》

2024

Multiple strategies, including 6mA methylation, affecting plant alternative splicing in allopolyploid peanut

Lihui Wang, Hua Chen, Yu-Hui Zhuang, Kun Chen, Chong Zhang, T. Cai, Qiang Yang, Huiwen Fu, Xiangyu Chen, Annapurna Chitkineni, Xiyin Wang, R. Varshney, Wei-Jian Zhuang

Plant Biotechnology Journal

DOI

2024

Designing future peanut: the power of genomics-assisted breeding

A. Raza, Hua Chen, Chong Zhang, Yu-Hui Zhuang, Yasir Sharif, T. Cai, Qiang Yang, Pooja Soni, M. Pandey, R. Varshney, Wei-Jian Zhuang

Theoretical and Applied Genetics

DOI

2024

Molecular Cloning and Functional Identification of a Pericarp- and Testa-Abundant Gene’s (AhN8DT-2) Promoter from Arachis hypogaea

Yasir Sharif, Yu-Hui Zhuang, Wenping Xie, Chong Zhang, Kun Chen, Ye Deng, Yu-Ting Chen, Huiwen Fu, Lihui Wang, Xiangyu Chen, Wei-Jian Zhuang, Hua Chen

International Journal of Molecular Sciences

DOI

2024

Phosphoribosylpyrophosphate synthetase as a metabolic valve advances Methylobacterium/Methylorubrum phyllosphere colonization and plant growth

Cong Zhang, Di-Fei Zhou, Mengying Wang, Ya-Zhen Song, Chong Zhang, Mingming Zhang, Jing Sun, Yao Lü, Xuhua Mo, Zengxin Ma, Xiao-Jie Yuan, Yi Shao, Hao-Ran Wang, Si-Han Dong, K. Bao, Shuhuan Lu, Martin Sadı́lek, Marina Kalyuzhnaya, Xin-Hui Xing, Song Yang

Nature Communications

DOI

2024

Pooled CRISPR Interference Screening Identifies Crucial Transcription Factors in Gas-Fermenting Clostridium ljungdahlii

Huan Zhang, Huibao Feng, Xin‐Hui Xing, Weihong Jiang, Chong Zhang, Yang Gu

ACS Synthetic Biology

DOI

2024

Engineering Bacillus coagulans with high osmotic tolerance for enhancing L-lactic acid production using sweet sorghum juice coupled with acid-pretreated soybean meal under unsterile conditions

Yongli Yan, Wenwen Shan, Yufan Wu, Chong Zhang, Gaosen Zhang, Guangxiu Liu, Jihong Chen, Wei Hu

Industrial Crops and Products

DOI

2024

Strain engineering of Bacillus coagulans with high osmotic pressure tolerance for effective L-lactic acid production from sweet sorghum juice under unsterile conditions

Yongli Yan, Wenwen Shan, Chong Zhang, Yufan Wu, Xin‐Hui Xing, Jihong Chen, Wei Hu

Bioresource Technology

DOI

2024

Base editor-mediated large-scale screening of functional mutations in bacteria for industrial phenotypes

Yaomeng Yuan, Xihao Liao, Shuang Li, Xin‐Hui Xing, Chong Zhang

Science China Life Sciences

DOI

2023

挑战造物主：合成生物学使能工具

史硕博，张翀，成喜雨，邢新会

《合成生物学》

2023

Whole genome resequencing identifies candidate genes and allelic diagnostic markers for resistance to Ralstonia solanacearum infection in cultivated peanut (Arachis hypogaea L.)

Chong Zhang, Wenping Xie, Huiwen Fu, Yu-Ting Chen, Hua Chen, T. Cai, Qiang Yang, Yu-Hui Zhuang, Xin Zhong, Kun Chen, Meijiang Gao, Feng-Zhen Liu, Y. Wan, M. Pandey, R. Varshney, Wei-Jian Zhuang

Frontiers in Plant Science

DOI

2023

miRNAs for crop improvement.

A. Raza, Sidra Charagh, B. Karikari, R. Sharif, V. Yadav, M. S. Mubarik, Madiha Habib, Yu-Hui Zhuang, Chong Zhang, Hua Chen, R. Varshney, Wei-Jian Zhuang

Plant physiology and biochemistry : PPB

DOI

2023

Genome-wide identification of papain-like cysteine protease family genes in cultivated peanut (Arachis hypogaea L.) and functional characterization of AhRD21B in response to chilling stress

Chong Zhang, Yu-Ting Chen, Lihui Wang, Lu Liu, Xin Zhong, Pan-Pan Chu, Meijiang Gao, Hua Chen, T. Cai, Faqian Xiong, Xiu-Rong Zhang, A. Raza, Rong-long Pan, R. Varshney, Feng-Zhen Liu, Wei-Jian Zhuang

Environmental and Experimental Botany

DOI

2023

Comprehensive in-silico characterization and expression analysis of UbiA prenyltransferase genes in peanut (Arachis hypogaea L.) against abiotic stresses

Qiang Yang, Yasir Sharif, Yu-Hui Zhuang, T. Cai, Lihui Wang, Huiwen Fu, Wenzhi Lu, Min Ma, Huan Yang, Hua-Qi Li, Ali Raza, Chong Zhang, Hua Chen, Faqian Xiong, Wei-Jian Zhuang

Plant Stress

DOI

2023

Genome-wide identification of germin-like proteins in peanut (Arachis hypogea L.) and expression analysis under different abiotic stresses

Qiang Yang, Yasir Sharif, Yu-Hui Zhuang, Hua Chen, Chong Zhang, Huiwen Fu, Shanshan Wang, T. Cai, Kun Chen, A. Raza, Lihui Wang, Wei-Jian Zhuang

Frontiers in Plant Science

DOI

2023

Genome-Wide Investigation of Apyrase (APY) Genes in Peanut (Arachis hypogaea L.) and Functional Characterization of a Pod-Abundant Expression Promoter AhAPY2-1p

Yasir Sharif, Gandeka Mamadou, Qiang Yang, T. Cai, Yu-Hui Zhuang, Kun Chen, Ye Deng, S. Khan, Niaz Ali, Chong Zhang, A. Raza, Hua Chen, R. Varshney, Wei-Jian Zhuang

International Journal of Molecular Sciences

DOI

2023

In-silico identification and characterization of O-methyltransferase gene family in peanut (Arachis hypogaea L.) reveals their putative roles in development and stress tolerance

T. Cai, Yasir Sharif, Yu-Hui Zhuang, Qiang Yang, Xiangyu Chen, Kun Chen, Yu-Ting Chen, Meijiang Gao, Hao Dang, Yijing Pan, Ali Raza, Chong Zhang, Hua Chen, Wei-Jian Zhuang

Frontiers in Plant Science

DOI

2023

CRISPR-Cas12a-assisted elimination of the non-specific signal from non-specific amplification in the Exponential Amplification Reaction

Chenqi Niu, Juewen Liu, Xin‐Hui Xing, Chong Zhang

Analytica Chimica Acta

DOI

2023

Genome‐scale metabolic models applied for human health and biopharmaceutical engineering

Feiran Li, Yu Chen, Johan Gustafsson, Hao Wang, Yi Wang, Chong Zhang, Xin‐Hui Xing

Quantitative Biology

DOI

2023

Deep-learning–assisted Sort-Seq enables high-throughput profiling of gene expression characteristics with high precision

Huibao Feng, Fan Li, Tianmin Wang, Xin‐Hui Xing, An‐Ping Zeng, Chong Zhang

Science Advances

DOI

2023

Establishment of picodroplet-based co-culture system to improve erythritol production in Yarrowia lipolytica

Shuang Li, Yuan Zhang, Yuan Zhang, Lu Li, Yaomeng Yuan, Haoxuan Sun, Xin‐Hui Xing, Xiaoyan Wang, Chong Zhang

Biochemical Engineering Journal

DOI

2023

Exploring the Trans-Cleavage Activity with Rolling Circle Amplification for Fast Detection of miRNA

Chenqi Niu, Juewen Liu, Xin‐Hui Xing, Chong Zhang

BioDesign Research

DOI

2022

Smart reprograming of plants against salinity stress using modern biotechnological tools

A. Raza, J. Tabassum, A. Fakhar, R. Sharif, Hua Chen, Chong Zhang, Luo Ju, V. Fotopoulos, K. Siddique, R. Singh, Wei-Jian Zhuang, R. Varshney

Critical Reviews in Biotechnology

DOI

2022

Genome-Wide Characterization of Ascorbate Peroxidase Gene Family in Peanut (Arachis hypogea L.) Revealed Their Crucial Role in Growth and Multiple Stress Tolerance

A. Raza, Yasir Sharif, Kun Chen, Lihui Wang, Huiwen Fu, Yu-Hui Zhuang, A. Chitikineni, Hua Chen, Chong Zhang, R. Varshney, Wei-Jian Zhuang

Frontiers in Plant Science

DOI

2022

The root-specific NtR12 promoter-based expression of RIP increased the resistance against bacterial wilt disease in tobacco

T. Cai, Hua Chen, Li-Ming Yan, Chong Zhang, Ye Deng, Sheng-Xin Wu, Qiang Yang, Rong-long Pan, A. Raza, Shun-Hui Chen, Wei-Jian Zhuang

Molecular Biology Reports

DOI

2022

Developing drought‐smart, ready‐to‐grow future crops

A. Raza, M. S. Mubarik, R. Sharif, Madiha Habib, Wardah Jabeen, Chong Zhang, Hua Chen, Zhong-Wen Chen, K. Siddique, Wei-Jian Zhuang, R. Varshney

The Plant Genome

DOI

2022

Cloning and Functional Characterization of a Pericarp Abundant Expression Promoter (AhGLP17-1P) From Peanut (Arachis hypogaea L.)

Yasir Sharif, Hua Chen, Ye Deng, N. Ali, S. Khan, Chong Zhang, Wenping Xie, Kun Chen, T. Cai, Qian Yang, Yu-Hui Zhuang, A. Raza, Wei-Jian Zhuang

Frontiers in Genetics

DOI

2022

Comprehensive genome sequence analysis of the devastating tobacco bacterial phytopathogen Ralstonia solanacearum strain FJ1003

Kun Chen, Yu-Hui Zhuang, Lihui Wang, Hua-Qi Li, Taijie Lei, Mengke Li, Meijiang Gao, Jiayu Wei, Hao Dang, A. Raza, Qian Yang, Yasir Sharif, Huan Yang, Chong Zhang, Hua-Song Zou, Wei-Jian Zhuang

Frontiers in Genetics

DOI

2022

Advances in “Omics” Approaches for Improving Toxic Metals/Metalloids Tolerance in Plants

A. Raza, J. Tabassum, Zainab Zahid, Sidra Charagh, Shanza Bashir, Rutwik Barmukh, R. S. A. Khan, F. Barbosa, Chong Zhang, Hua Chen, Wei-Jian Zhuang, R. Varshney

Frontiers in Plant Science

DOI

2022

Identification of Key Gene Networks and Deciphering Transcriptional Regulators Associated With Peanut Embryo Abortion Mediated by Calcium Deficiency

Hua Chen, Qiang Yang, Huiwen Fu, Kun Chen, Shan-Shan Zhao, Chong Zhang, T. Cai, Lihui Wang, Wenzhi Lu, Hao Dang, Meijiang Gao, Hua-Qi Li, Xinyi Yuan, R. Varshney, Wei-Jian Zhuang

Frontiers in Plant Science

DOI

2022

CRISPRi-microfluidics screening enables genome-scale target identification for high-titer protein production and secretion

Xinyu Yu, Shuang Li, Huibao Feng, Xihao Liao, Xin‐Hui Xing, Zhonghu Bai, Xiuxia Liu, Chong Zhang

Metabolic Engineering

DOI

2022

Single‐cell microliter‐droplet screening system (MISS Cell): An integrated platform for automated high‐throughput microbial monoclonal cultivation and picking

Xingjin Jian, Xiaojie Guo, Zhengshuo Cai, Longfeng Wei, Liyan Wang, Xin‐Hui Xing, Chong Zhang

Biotechnology and Bioengineering

DOI

2022

Encoding Genetic Circuits with DNA Barcodes Paves the Way for Machine Learning-Assisted Metabolite Biosensor Response Curve Profiling in Yeast

Yikang Zhou, Yaomeng Yuan, Yinan Wu, Lu Li, Aysha Jameel, Xin‐Hui Xing, Chong Zhang

ACS Synthetic Biology

DOI

2022

Microbial micro-tube culture system: A miniature bioreactor for controllable bubble-free oxygen supply based on high gas-permeability Teflon tube

Ruirui Li, Xiaojie Guo, Kang Xiong, Xin‐Hui Xing, Chong Zhang

Biochemical Engineering Journal

DOI

2022

Sodium formate redirects carbon flux and enhances heterologous mevalonate production in Methylobacterium extorquens AM1

Lanyu Cui, Jing Yang, Wei‐Fan Liang, Song Yang, Chong Zhang, Xin‐Hui Xing

Biotechnology Journal

DOI

2022

Development of a novel platform for recombinant protein production in Corynebacterium glutamicum on ethanol

Xinyu Yu, Xiuxia Liu, Xiong Gao, Xunxun Luo, Yankun Yang, Ye Li, Chunli Liu, Chong Zhang, Zhonghu Bai

Synthetic and Systems Biotechnology

DOI

2022

Automated Microbial Cultivation and Adaptive Evolution using Microbial Microdroplet Culture System (MMC)

Xingjin Jian, Xiaojie Guo, Jia Wang, Zheng Lin Tan, Xin‐Hui Xing, Liyan Wang, Chong Zhang

Journal of Visualized Experiments

DOI

2021

ARTP诱变钝顶螺旋藻突变体比较组学研究

苏楠，吴亦楠，陈韵亿，金丽华，张翀，Shimpei Aikawa，Tomohisa Hasunuma，Akihiko Kondo，邢新会

《化工学报》

2021

合成甲基营养细胞工厂同化甲醇的研究进展及未来展望

张卉，袁姚梦，张翀，杨松，邢新会

《合成生物学》

2021

天然活性多肽的发掘策略和生产技术

王彦珺，李姝承，关长阁，何东，廖锡豪，王怡，陈海红，张翀，邢新会

《生物工程学报》

2021

高通量自动化微生物微液滴进化培养与筛选技术及其装备化

郭肖杰，王立言，张翀，邢新会

《生物工程学报》

2021

Construction of yeast two-hybrid cDNA library induced by <italic>Ralstonia solanacearum</italic> and interaction protein screening for AhRRS5 in peanut

Yu-Ting Chen, Lu Liu, Pan-Pan Chu, Jiang-Yan Wei, H. Qian, Hua Chen, T. Cai, Wei-Jian Zhuang, Chong Zhang

ACTA AGRONOMICA SINICA

DOI

2021

A versatile toolbox for CRISPR-based genome engineering in Pichia pastoris

Xihao Liao, Lu Li, Aysha Jameel, Xin‐Hui Xing, Chong Zhang

Applied Microbiology and Biotechnology

DOI

2021

Aptamer assisted CRISPR-Cas12a strategy for small molecule diagnostics

Chenqi Niu, Chuyi Wang, Fan Li, Xiang Zheng, Xin‐Hui Xing, Chong Zhang

Biosensors and Bioelectronics

DOI

2021

Rewiring the native methanol assimilation metabolism by incorporating the heterologous ribulose monophosphate cycle into Methylorubrum extorquens

Xiao-Jie Yuan, Wenjing Chen, Zengxin Ma, Qianqian Yuan, Min Zhang, Lian He, Xuhua Mo, Chong Zhang, Changtai Zhang, Meng-Ying Wang, Xin‐Hui Xing, Song Yang

Metabolic Engineering

DOI

2021

Recent advances of integrated microfluidic suspension cell culture system

Yi Jing Kerk, Aysha Jameel, Xin‐Hui Xing, Chong Zhang

Engineering Biology

DOI

2021

Advanced strategies and tools to facilitate and streamline microbial adaptive laboratory evolution

Yinan Wu, Aysha Jameel, Xin‐Hui Xing, Chong Zhang

Trends in biotechnology

DOI

2021

[Technology development and instrumentation of a high-throughput and automated microbial microdroplet culture system for microbial evolution and screening].

Xiaojie Guo, Liyan Wang, Chong Zhang, Xin‐Hui Xing

PubMed

DOI

2020

微生物细胞工厂的设计构建：从诱变育种到全基因组定制化创制

袁姚梦，邢新会，张翀

《合成生物学》

2020

Ectopic Expression of AhGLK1b (GOLDEN2-like Transcription Factor) in Arabidopsis Confers Dual Resistance to Fungal and Bacterial Pathogens

N. Ali, Hua Chen, Chong Zhang, S. Khan, M. Gandeka, Dong-Yang Xie, Wei-Jian Zhuang

Genes

DOI

2020

Reply to: Evaluating two different models of peanut’s origin

Wei-Jian Zhuang, Xi-Yin Wang, A. Paterson, Hua Chen, Meng Yang, Chong Zhang, Pengchuan Sun, Yixiong Zheng, Lihui Wang, Wenping Xie, Wen-Ting Chu, Huiwen Fu, R. Varshney

Nature Genetics

DOI

2020

High-density SNP map facilitates fine mapping of QTLs and candidate genes discovery for Aspergillus flavus resistance in peanut (Arachis hypogaea)

S. Khan, Hua Chen, Ye Deng, Yuhua Chen, Chong Zhang, T. Cai, N. Ali, Gandeka Mamadou, Dong-Yang Xie, B. Guo, R. Varshney, Wei-Jian Zhuang

Theoretical and Applied Genetics

DOI

2020

Cover Image

Xingjin Jian, Xiaojie Guo, Jia Chen Wang, Zheng Lin Tan, Xin‐Hui Xing, Liyan Wang, Chong Zhang

Biotechnology and Bioengineering

DOI

2020

Microbial microdroplet culture system (MMC): An integrated platform for automated, high‐throughput microbial cultivation and adaptive evolution

Xingjin Jian, Xiaojie Guo, Jia Wang, Zheng Lin Tan, Xin‐Hui Xing, Liyan Wang, Chong Zhang

Biotechnology and Bioengineering

DOI

2020

Guide-target mismatch effects on dCas9–sgRNA binding activity in living bacterial cells

Huibao Feng, Jiahui Guo, Tianmin Wang, Chong Zhang, Xin‐Hui Xing

Nucleic Acids Research

DOI

2020

Highly Efficient Capture of Marine Microbial Strains in Seawater Using Bare Fe3O4 Magnetic Beads

Yi Zheng, Xingjin Jian, Xin‐Hui Xing, Chong Zhang

Current Microbiology

DOI

2019

微生物微培养系统研究现状与展望

陈政霖，马春玄，邢新会，张翀

《生物工程学报》

2019

ARTP诱变技术在食品和饲料加工生物催化剂改造中的应用进展

张雪，吴亦楠，马飞，王立言，张翀，李和平，邢新会

《生物产业技术》

2019

口服肝素与小鼠肠道菌群的相互作用

周雪，王怡，何东，曾文，张翀，薛正莲，邢新会

《生物工程学报》

DOI

2019

Integrated microRNA and transcriptome profiling reveals a miRNA-mediated regulatory network of embryo abortion under calcium deficiency in peanut (Arachis hypogaea L.)

Hua Chen, Qiang Yang, Kun Chen, Shan-Shan Zhao, Chong Zhang, Rong-long Pan, T. Cai, Ye Deng, Xing-Jun Wang, Yu-Ting Chen, Wen-Ting Chu, Wenping Xie, Wei-Jian Zhuang

BMC Genomics

DOI

2019

Overexpression of the peanut CLAVATA1-like leucine-rich repeat receptor-like kinase AhRLK1 confers increased resistance to bacterial wilt in tobacco

Chong Zhang, Hua Chen, Rui-Rong Zhuang, Yu-Ting Chen, Ye Deng, T. Cai, Shuai-Yin Wang, Qinzheng Liu, Rong-Hua Tang, S. Shan, Rong-long Pan, Li-Song Chen, Wei-Jian Zhuang

Journal of Experimental Botany

DOI

2019

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

Wei-Jian Zhuang, Hua Chen, Meng Yang, Jianping Wang, M. Pandey, Chong Zhang, Wen-Chi Chang, Liang-Sheng Zhang, Xing-Tan Zhang, Rong-Hua Tang, Vanika Garg, Xing-Jun Wang, Hai-Bao Tang, Chi-Nga Chow, Jinpeng Wang, Ye Deng, De-Peng Wang, A. Khan, Qiang Yang, T. Cai, Prasad Bajaj, Kangcheng Wu, B. Guo, Xin-You Zhang, Jingjing Li, Fan Liang, Jiang Hu, B. Liao, Sheng-Yi Liu, A. Chitikineni, Hansong Yan, Yixiong Zheng, S. Shan, Qinzheng Liu, Dong-Yang Xie, Zhenyi Wang, S. Khan, N. Ali, Chuanzhi Zhao, Xin-Guo Li, Zi-Liang Luo, Shubiao Zhang, Rui-Rong Zhuang, Ze Peng, Shuai-Yin Wang, Gandeka Mamadou, Yu-Hui Zhuang, Zifan Zhao, Weichang Yu, Faqian Xiong, Weipeng Quan, M. Yuan, Yu Li, Hua-Song Zou, H. Xia, L. Zha, Junpeng Fan, Jigao Yu, Wenping Xie, Jiaqing Yuan, Kun Chen, Shan-Shan Zhao, Wen-Ting Chu, Yu-Ting Chen, Pengchuan Sun, Fan-Bo Meng, Tao Zhuo, Yuhao Zhao, Chun-Juan Li, G. He, Yongli Zhao, Congcong Wang, P. B. Kavi Kishor, Rong-long Pan, A. Paterson, Xi-Yin Wang, R. Ming, R. Varshney

Nature Genetics

DOI

2019

Dynamics of transcription–translation coordination tune bacterial indole signaling

Tianmin Wang, Tianmin Wang, Xiang Zheng, Haonan Ji, Ting-liang Wang, Ting-liang Wang, Xin‐Hui Xing, Chong Zhang

Nature Chemical Biology

DOI

2019

[Micro-cultivation system in microbiology: frontiers and prospects].

Zheng Lin Tan, Chunxuan Ma, Xin‐Hui Xing, Chong Zhang

PubMed

DOI

2019

Gel microdroplet–based high-throughput screening for directed evolution of xylanase-producing Pichia pastoris

Chunxuan Ma, Zheng Lin Tan, Ying Chih Lin, Shuangyan Han, Xin‐Hui Xing, Chong Zhang

Journal of Bioscience and Bioengineering

DOI

2019

In vivo continuous evolution of metabolic pathways for chemical production

Zheng Lin Tan, Xiang Zheng, Yinan Wu, Xingjin Jian, Xin‐Hui Xing, Chong Zhang

Microbial Cell Factories

DOI

2018

Pooled CRISPR interference screening enables genome-scale functional genomics study in bacteria with superior performance

Tianmin Wang, Changge Guan, Jiahui Guo, Bing Liu, Yinan Wu, Zhen Xie, Chong Zhang, Xin‐Hui Xing

Nature Communications

DOI

2018

MiYA, an efficient machine-learning workflow in conjunction with the YeastFab assembly strategy for combinatorial optimization of heterologous metabolic pathways in Saccharomyces cerevisiae

Yikang Zhou, Gang Li, Junkai Dong, Xin‐Hui Xing, Junbiao Dai, Chong Zhang

Metabolic Engineering

DOI

2018

Genome-wide screening identifies promiscuous phosphatases impairing terpenoid biosynthesis in Escherichia coli

Tianmin Wang, Jiahui Guo, Yangyang Liu, Zhenglian Xue, Chong Zhang, Xin‐Hui Xing

Applied Microbiology and Biotechnology

DOI

2018

Improved sgRNA design in bacteria via genome-wide activity profiling

Jiahui Guo, Tianmin Wang, Changge Guan, Bing Liu, Cheng Yu Luo, Zhen Xie, Chong Zhang, Xin‐Hui Xing

Nucleic Acids Research

DOI

2018

Enhanced Production of Crude Violacein from Glucose in Escherichia coli by Overexpression of Rate-Limiting Key Enzyme(S) Involved in Violacein Biosynthesis

Yikang Zhou, Mingyue Fang, Gang Li, Chong Zhang, Xin‐Hui Xing

Applied Biochemistry and Biotechnology

DOI

2018

Breeding of Methanol-Tolerant Methylobacterium extorquens AM1 by Atmospheric and Room Temperature Plasma Mutagenesis Combined With Adaptive Laboratory Evolution

Lanyu Cui, Shanshan Wang, Changge Guan, Wei‐Fan Liang, Zhenglian Xue, Chong Zhang, Xin‐Hui Xing

Biotechnology Journal

DOI

2018

Design of Fusion Proteins for Efficient and Soluble Production of Immunogenic Ebola Virus Glycoprotein inEscherichia coli

Yang Ji, Yuan Lu, Yishu Yan, Xinxin Liu, Nan Su, Chong Zhang, Shengli Bi, Xin‐Hui Xing

Biotechnology Journal

DOI

2017

代谢物生物传感器:微生物细胞工厂构建中的合成生物学工具

周益康，吴亦楠，王天民，郑翔，邢新会，张翀

《生物技术通报》

2017

大肠杆菌宿主遗传背景对色氨酸生物传感器响应特性的影响

王天民，张翀，邢新会

《生物加工过程》

2017

扭脱甲基杆菌AM1生物加工过程研究进展

王山山，崔兰玉，薛正莲，张翀，邢新会

《生物加工过程》

2017

NtRRS2 (tobacco CC-NBS-LRR) gene and application thereof in tobacco bacterial wilt resistance

Hua Chen, Wei-Jian Zhuang, Yuan-Huan Zeng, Chong Zhang, T. Cai, Ye Deng, Qiang Yang

2017

NtRRS3 gene and application thereof in resisting bacterial wilt by tobaccos

Wei-Jian Zhuang, Yuan-Huan Zeng, Hua Chen, Chong Zhang, T. Cai, Dong-Yang Xie, Ye Deng

2017

Maltose Utilization as a Novel Selection Strategy for Continuous Evolution of Microbes with Enhanced Metabolite Production

Shu-De Liu, Yinan Wu, Tianmin Wang, Chong Zhang, Xin‐Hui Xing

ACS Synthetic Biology

DOI

2017

Cre/loxP-Mediated Multicopy Integration of the Mevalonate Operon into the Genome of Methylobacterium extorquens AM1

Wei‐Fan Liang, Mingyang Sun, Lanyu Cui, Chong Zhang, Xin‐Hui Xing

Applied Biochemistry and Biotechnology

DOI

2017

Bioprocess engineering for biohythane production from low-grade waste biomass: technical challenges towards scale up

Zhidan Liu, Buchun Si, Jiaming Li, Jianwei He, Chong Zhang, Yuan Lu, Yuanhui Zhang, Xin-Hui Xing

Current Opinion in Biotechnology

DOI

2017

A rapid and specific colorimetric method for free tryptophan quantification

Yinan Wu, Tianmin Wang, Chong Zhang, Xin‐Hui Xing

Talanta

DOI

2017

Targeted mutagenesis: A sniper-like diversity generator in microbial engineering

Xiang Zheng, Xin‐Hui Xing, Chong Zhang

Synthetic and Systems Biotechnology

DOI

2017

Metabolic engineering of Escherichia coli cell factory for highly active xanthine dehydrogenase production

Chenghua Wang, Chong Zhang, Xin‐Hui Xing

Bioresource Technology

DOI

2016

Identification of low Ca(2+) stress-induced embryo apoptosis response genes in Arachis hypogaea by SSH-associated library lift (SSHaLL).

Hua Chen, Chong Zhang, T. Cai, Ye Deng, Shuang-shuang Zhou, Yixiong Zheng, Shiwei Ma, Rong-Hua Tang, R. Varshney, Wei-Jian Zhuang

Plant Biotechnology Journal

DOI

2016

QTL mapping for bacterial wilt resistance in peanut (Arachis hypogaea L.)

Yongli Zhao, Chong Zhang, Hua Chen, M. Yuan, R. Nipper, C. S. Prakash, Wei-Jian Zhuang, G. He

Molecular breeding

DOI

2016

Characterization of NtREL1, a novel root-specific gene from tobacco, and upstream promoter activity analysis in homologous and heterologous hosts

Chong Zhang, Shu Pan, Hua Chen, T. Cai, C. Zhuang, Ye Deng, Yu-Hui Zhuang, Yuan-Huan Zeng, Shun-Hui Chen, Wei-Jian Zhuang

Plant Cell Reports

DOI

2016

Method for producing resveratrol by driving AhRESS genes through tobacco root specific promoter NtR2

Wei-Jian Zhuang, Shi-Wei Ma, Hua Chen, Qin Zheng, T. Cai, Ye Deng, Chong Zhang

2016

Overexpression of a novel peanut NBS‐LRR gene AhRRS5 enhances disease resistance to Ralstonia solanacearum in tobacco

Chong Zhang, Hua Chen, T. Cai, Ye Deng, Rui-Rong Zhuang, Ning Zhang, Yuan-Huan Zeng, Yixiong Zheng, Rong-Hua Tang, Rong-long Pan, Wei-Jian Zhuang

Plant Biotechnology Journal

DOI

2016

Method for breeding high-oleic acid recessive mutant Ahfad2a-1 strains of peanuts

Wei-Jian Zhuang, Hua Chen, Chong Zhang, M. Kang, T. Cai, Ye Deng

2016

Biosensor-assisted transcriptional regulator engineering for Methylobacterium extorquens AM1 to improve mevalonate synthesis by increasing the acetyl-CoA supply

Wei‐Fan Liang, Lanyu Cui, Jinyu Cui, Kaiwen Yu, Song Yang, Tianmin Wang, Changge Guan, Chong Zhang, Xin‐Hui Xing

Metabolic Engineering

DOI

2016

Enhanced catalytic properties of novel (αbγ)2 heterohexameric Rhodobacter capsulatus xanthine dehydrogenase by separate expression of the redox domains in Escherichia coli

Chenghua Wang, Gang Li, Chong Zhang, Xin‐Hui Xing

Biochemical Engineering Journal

DOI

2016

Xanthine dehydrogenase: An old enzyme with new knowledge and prospects

Chenghua Wang, Chong Zhang, Xin‐Hui Xing

Bioengineered

DOI

2015

常压室温等离子体(ARTP)诱变及高通量筛选那西肽高产菌株

周扬，薛正莲，夏俊，张翀，邢新会

《工业微生物》

2015

Intermediate-sensor assisted push–pull strategy and its application in heterologous deoxyviolacein production in Escherichia coli

Mingyue Fang, Tianmin Wang, Chong Zhang, Jili Bai, Xiang Zheng, Xuejin Zhao, Chunbo Lou, Xin‐Hui Xing

Metabolic Engineering

DOI

2015

Insights into the global regulation of anaerobic metabolism for improved biohydrogen production

Yuan Lu, Hongxin Zhao, Chong Zhang, Xin‐Hui Xing

Bioresource Technology

DOI

2015

Construction of a linker library with widely controllable flexibility for fusion protein design

Gang Li, Ziliang Huang, Chong Zhang, Bojun Dong, Ruohai Guo, Hong-Wei Yue, Li‐Tang Yan, Xin‐Hui Xing

Applied Microbiology and Biotechnology

DOI

2014

MBP融合肝素酶Ⅲ大肠杆菌高效表达体系构建

苏楠，吴敬君，李晔，张翀，李梅，邢新会

《化工学报》

2014

常压室温等离子体生物诱变育种及其应用研究进展

张雪，张晓菲，王立言，张翀，陈韵亿，常海波，李和平，邢新会

《化工学报》

2014

烟草根特异 NtR19 基因终止子的克隆及功能分析

Cui-Yan Cai, Yu-Hui Zhuang, Chong Zhang, Yuan-Huan Zeng, Shun-Hui Chen, Wei-Jian Zhuang

2014

花生预苯胺酸脱氢酶基因 AhADH 的克隆及分子特性分析

Fu-Ting Zhang, Shuang-Biao Zhou, Chong Zhang, Hua Chen, T. Cai, Wei-Jian Zhuang

2013

肝素黄杆菌肝素酶Ⅲ基因hepC的可溶表达体系构建及酶学性质研究

李晔，吴敬君，叶逢春，苏楠，张翀，邢新会

《生物技术通报》

2013

解纤维梭菌培养条件的优化

王朗，刘志丹，王天民，吴筱，张翀，汪群慧，邢新会

《生物工程学报》

2013

[Optimization of culture conditions for Clostridium cellulolyticum].

Lang Wang, Zhidan Liu, Tianmin Wang, Xiao Tong Wu, Chong Zhang, Qunhui Wang, Xin‐Hui Xing

PubMed

2012

融合酶的设计和应用研究进展

黄子亮，张翀，吴希，苏楠，邢新会

《生物工程学报》

2012

表达磷酸转移酶工程菌整细胞催化肌苷5′-位磷酸化的工艺条件研究

李文峰，郑明英，蔡友华，严杰能，陆最青，张达，张翀，梁伟凡，邢新会

《现代食品科技》

2012

States and challenges for high-value biohythane production from waste biomass by dark fermentation technology

Zhidan Liu, Chong Zhang, Yuan Lu, Xiao Hong Wu, Lang Wang, Linjun Wang, Bing Han, Xin-Hui Xing

Bioresource Technology

DOI

2011

常压室温等离子体快速诱变产油酵母的条件及其突变株的特性

金丽华，方明月，张翀，蒋培霞，葛楠，李和平，邢新会，包成玉

《生物工程学报》

2011

Luciferase and fluorescent protein as dual reporters analyzing the effect of n-dodecyltrimethylammonium bromide on the physiology of Pseudomonas putida

Chong Zhang, Feng-Yi Su, Jianfeng Zhang, Sang-Tian Yan, Xin‐Hui Xing

Applied Microbiology and Biotechnology

DOI

2010

Bioengineering of methanotrophic consortia for reduction of methane emission in coal mines

Xin‐Hui Xing, Hao Jiang, Peixia Jiang, Chong Zhang, Yin Chen, Colin J. Murrell

Journal of Biotechnology

DOI

2009

手性醇脱氢酶与甲酸脱氢酶的融合蛋白体系的构建

吴希，张翀，邢新会

《化工学报》

2009

颗粒状甲烷单加氧酶异源表达方法

韩冰，苏涛，杨程，江皓，吴昊，张翀，李信，邢新会

《生物工程学报》

2009

Rational bioprocess design and manipulation of metabolic pathways for zero- and one-carbon sustainable bioindustry

Xin‐Hui Xing, Chong Zhang, Yuan Lu, Qiheng Lai, Hongxin Zhao, Fengxiang Lv, Peixia Jiang

Journal of Bioscience and Bioengineering

DOI

2005

发酵生物制氢研究进展

邢新会，张翀

《生物加工过程》

2005

A simplified method for assay of hydrogenase activities of H2 evolution and uptake in Enterobacter aerogenes

YunLi Ren, Xin Xing, Chong Zhang, Zhongxuan Gou

Biotechnology Letters

DOI

2004

Clostridium paraputrificum M-21发酵制氢培养条件研究

卢元，张翀，邢新会

《生物加工过程》

2004

辅酶再生体系的研究进展

张翀，邢新会

《生物工程学报》

精选作品

期刊论文

Double-edged sword: Aspergillus flavus as a threat to food safety and a resource for biotechnology.

Climate‐Driven Regulatory Plasticity Reshapes Mycotoxin Risk and Control in Food Systems

Positional cloning of a peanut CC-NBS-LRR gene, AhRRS6, confers resistance to Ralstonia solanacearum

AhDi19-3B Confers Drought Tolerance in Peanut: Functional Characterization of a Candidate Gene from the Genome-Wide Identified Di19 Family

Genome-wide identification of the peanut SUT gene family and functional analysis of AhSUT4 in sugar accumulation

Synergizing high-level protein productivity with robust physiological traits via multi-scale droplet microfluidics-integrated evolution engineering

High-Throughput Screening of L-Lactic Acid-Hyperproducing Bacillus coagulans Mutants Using an Automated Droplet Microfluidic Platform

基于微流控技术的工程细胞高通量表型测试技术与装备研究进展

Epigenetic insights into the domestication of tetraploid peanut

A Ralstonia effector RipAU impairs peanut AhSBT1.7 immunity for pathogenicity via AhPME-mediated cell wall degradation.

GLiDe: a web-based genome-scale CRISPRi sgRNA design tool for prokaryotes

The advances of strategies and technologies in high-throughput microbial culturomics

Engineering Methylorubrum extorquens for the Biosynthesis of d -Lactic Acid from Methanol

An efficient microbial secretion platform for developing supercharged polypeptides-based functional materials from C2 feedstock

合成生物学表型测试生物反应器及其装备化研究进展

停滞棒杆菌遗传改造工具和启动子文库构建

Multiple strategies, including 6mA methylation, affecting plant alternative splicing in allopolyploid peanut

Designing future peanut: the power of genomics-assisted breeding

Molecular Cloning and Functional Identification of a Pericarp- and Testa-Abundant Gene’s (AhN8DT-2) Promoter from Arachis hypogaea

Phosphoribosylpyrophosphate synthetase as a metabolic valve advances Methylobacterium/Methylorubrum phyllosphere colonization and plant growth

Pooled CRISPR Interference Screening Identifies Crucial Transcription Factors in Gas-Fermenting Clostridium ljungdahlii

Engineering Bacillus coagulans with high osmotic tolerance for enhancing L-lactic acid production using sweet sorghum juice coupled with acid-pretreated soybean meal under unsterile conditions

Strain engineering of Bacillus coagulans with high osmotic pressure tolerance for effective L-lactic acid production from sweet sorghum juice under unsterile conditions

Base editor-mediated large-scale screening of functional mutations in bacteria for industrial phenotypes

挑战造物主：合成生物学使能工具

Whole genome resequencing identifies candidate genes and allelic diagnostic markers for resistance to Ralstonia solanacearum infection in cultivated peanut (Arachis hypogaea L.)

miRNAs for crop improvement.

Genome-wide identification of papain-like cysteine protease family genes in cultivated peanut (Arachis hypogaea L.) and functional characterization of AhRD21B in response to chilling stress

Comprehensive in-silico characterization and expression analysis of UbiA prenyltransferase genes in peanut (Arachis hypogaea L.) against abiotic stresses

Genome-wide identification of germin-like proteins in peanut (Arachis hypogea L.) and expression analysis under different abiotic stresses

Genome-Wide Investigation of Apyrase (APY) Genes in Peanut (Arachis hypogaea L.) and Functional Characterization of a Pod-Abundant Expression Promoter AhAPY2-1p

In-silico identification and characterization of O-methyltransferase gene family in peanut (Arachis hypogaea L.) reveals their putative roles in development and stress tolerance

CRISPR-Cas12a-assisted elimination of the non-specific signal from non-specific amplification in the Exponential Amplification Reaction

Genome‐scale metabolic models applied for human health and biopharmaceutical engineering

Deep-learning–assisted Sort-Seq enables high-throughput profiling of gene expression characteristics with high precision

Establishment of picodroplet-based co-culture system to improve erythritol production in Yarrowia lipolytica

Exploring the Trans-Cleavage Activity with Rolling Circle Amplification for Fast Detection of miRNA

Smart reprograming of plants against salinity stress using modern biotechnological tools

Genome-Wide Characterization of Ascorbate Peroxidase Gene Family in Peanut (Arachis hypogea L.) Revealed Their Crucial Role in Growth and Multiple Stress Tolerance

The root-specific NtR12 promoter-based expression of RIP increased the resistance against bacterial wilt disease in tobacco

Developing drought‐smart, ready‐to‐grow future crops

Cloning and Functional Characterization of a Pericarp Abundant Expression Promoter (AhGLP17-1P) From Peanut (Arachis hypogaea L.)

Comprehensive genome sequence analysis of the devastating tobacco bacterial phytopathogen Ralstonia solanacearum strain FJ1003

Advances in “Omics” Approaches for Improving Toxic Metals/Metalloids Tolerance in Plants

Identification of Key Gene Networks and Deciphering Transcriptional Regulators Associated With Peanut Embryo Abortion Mediated by Calcium Deficiency

CRISPRi-microfluidics screening enables genome-scale target identification for high-titer protein production and secretion

Single‐cell microliter‐droplet screening system (MISS Cell): An integrated platform for automated high‐throughput microbial monoclonal cultivation and picking

Encoding Genetic Circuits with DNA Barcodes Paves the Way for Machine Learning-Assisted Metabolite Biosensor Response Curve Profiling in Yeast

Microbial micro-tube culture system: A miniature bioreactor for controllable bubble-free oxygen supply based on high gas-permeability Teflon tube

Sodium formate redirects carbon flux and enhances heterologous mevalonate production in Methylobacterium extorquens AM1

Development of a novel platform for recombinant protein production in Corynebacterium glutamicum on ethanol

Automated Microbial Cultivation and Adaptive Evolution using Microbial Microdroplet Culture System (MMC)

ARTP诱变钝顶螺旋藻突变体比较组学研究

合成甲基营养细胞工厂同化甲醇的研究进展及未来展望

天然活性多肽的发掘策略和生产技术

高通量自动化微生物微液滴进化培养与筛选技术及其装备化

Construction of yeast two-hybrid cDNA library induced by <italic>Ralstonia solanacearum</italic> and interaction protein screening for AhRRS5 in peanut

A versatile toolbox for CRISPR-based genome engineering in Pichia pastoris

Aptamer assisted CRISPR-Cas12a strategy for small molecule diagnostics

Rewiring the native methanol assimilation metabolism by incorporating the heterologous ribulose monophosphate cycle into Methylorubrum extorquens

Recent advances of integrated microfluidic suspension cell culture system

Advanced strategies and tools to facilitate and streamline microbial adaptive laboratory evolution

[Technology development and instrumentation of a high-throughput and automated microbial microdroplet culture system for microbial evolution and screening].

微生物细胞工厂的设计构建：从诱变育种到全基因组定制化创制

Ectopic Expression of AhGLK1b (GOLDEN2-like Transcription Factor) in Arabidopsis Confers Dual Resistance to Fungal and Bacterial Pathogens

Reply to: Evaluating two different models of peanut’s origin

High-density SNP map facilitates fine mapping of QTLs and candidate genes discovery for Aspergillus flavus resistance in peanut (Arachis hypogaea)

Cover Image

Microbial microdroplet culture system (MMC): An integrated platform for automated, high‐throughput microbial cultivation and adaptive evolution

Guide-target mismatch effects on dCas9–sgRNA binding activity in living bacterial cells

Highly Efficient Capture of Marine Microbial Strains in Seawater Using Bare Fe3O4 Magnetic Beads

微生物微培养系统研究现状与展望

ARTP诱变技术在食品和饲料加工生物催化剂改造中的应用进展

口服肝素与小鼠肠道菌群的相互作用

Integrated microRNA and transcriptome profiling reveals a miRNA-mediated regulatory network of embryo abortion under calcium deficiency in peanut (Arachis hypogaea L.)

Overexpression of the peanut CLAVATA1-like leucine-rich repeat receptor-like kinase AhRLK1 confers increased resistance to bacterial wilt in tobacco

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

Dynamics of transcription–translation coordination tune bacterial indole signaling