靳喜云｜哈尔滨医科大学｜学者主页

期刊论文

2026

Multi-layer molecular profiling defines an immune-active colorectal cancer subtype with therapeutic relevance

Miao Zou, Zuxiang Wang, Wenyang Zhou, Guangfu Xue, Hui Yi, Fenglan Pang, Renjie Tan, Zhaochun Xu, Xiyun Jin, Haoxiu Sun, Pingping Wang, Qinghua Jiang

Molecular Therapy — Nucleic Acids

DOI

2025

CellSNVReg: a multidimensional resource for SNV-mediated regulatory perturbations in single-cell and spatial omics

Jingyi Shi, Shiqian Zhang, Zhenglin Lu, Weiwei Zhou, Weijian Lu, Gengdong Chen, Jianing Li, Wenhui Liu, Jiaqi Huang, Tiantongfei Jiang, Xiyun Jin, Juan Xu, Tingting Shao

Nucleic Acids Research

DOI

2025

TriCLFF: a multi-modal feature fusion framework using contrastive learning for spatial domain identification

Fenglan Pang, Guangfu Xue, Wenyi Yang, Yideng Cai, Jinhao Que, Haoxiu Sun, Pingping Wang, Shuaiyu Su, Xiyun Jin, Qian Ding, Zuxiang Wang, Meng Luo, Yuexin Yang, Lin Yi, Renjie Tan, Yusong Liu, Zhaochun Xu, Qinghua Jiang

Briefings in Bioinformatics

DOI

2025

Identifying T cell antigen at the atomic level with graph convolutional network

Jinhao Que, Guangfu Xue, Tao Wang, Xiyun Jin, Zuxiang Wang, Yideng Cai, Wenyi Yang, Meng Luo, Qian Ding, Jinwei Zhang, Yilin Wang, Yuexin Yang, Fenglan Pang, Yi Hui, Zheng Wei, Jun Xiong, Shouping Xu, Lin Yi, Haoxiu Sun, Pingping Wang, Zhaochun Xu, Qinghua Jiang

Nature Communications

DOI

2024

Dimension reduction, cell clustering, and cell–cell communication inference for single-cell transcriptomics with DcjComm

Qian Ding, Wenyi Yang, Guangfu Xue, Hongxin Liu, Yideng Cai, Jinhao Que, Xiyun Jin, Meng Luo, Fenglan Pang, Yuexin Yang, Yi Lin, Yusong Liu, Haoxiu Sun, Renjie Tan, Pingping Wang, Zhaochun Xu, Qinghua Jiang

Genome biology

DOI

2024

Deciphering cell–cell communication at single-cell resolution for spatial transcriptomics with subgraph-based graph attention network

Wenyi Yang, Pingping Wang, Shouping Xu, Tao Wang, Meng Luo, Yideng Cai, Chang Xu, Guangfu Xue, Jinhao Que, Qian Ding, Xiyun Jin, Yuexin Yang, Fenglan Pang, Boran Pang, Yi Lin, Huan Nie, Zhaochun Xu, Yong Hua Ji, Qinghua Jiang

Nature Communications

DOI

2024

Supplementary Figures S1-S8 from The Deep Learning Framework iCanTCR Enables Early Cancer Detection Using the T-cell Receptor Repertoire in Peripheral Blood

Yideng Cai, Meng Luo, Wenyi Yang, Chang Xu, Pingping Wang, Guangfu Xue, Xiyun Jin, Rui Cheng, Jinhao Que, Wenyang Zhou, Boran Pang, Shouping Xu, Yu Li, Qinghua Jiang, Zhaochun Xu

DOI

2024

The Deep Learning Framework iCanTCR Enables Early Cancer Detection Using the T-cell Receptor Repertoire in Peripheral Blood

Yideng Cai, Meng Luo, Wenyi Yang, Chang Xu, Pingping Wang, Guangfu Xue, Xiyun Jin, Rui Cheng, Jinhao Que, Wenyang Zhou, Boran Pang, Shouping Xu, Yu Li, Qinghua Jiang, Zhaochun Xu

Cancer Research

DOI

2023

Spatial transcriptome analysis of long non-coding RNAs reveals tissue specificity and functional roles in cancer

Kang Xu, Xiyun Jin, Ya Hong Luo, Haozhe Zou, Dezhong Lv, Liping Wang, Limei Fu, Yangyang Cai, Tingting Shao, Yongsheng Li, Juan Xu

Journal of Zhejiang University SCIENCE B

DOI

2021

Single cell RNA and immune repertoire profiling of COVID-19 patients reveal novel neutralizing antibody

Fang Li, Meng Luo, Wenyang Zhou, Jinliang Li, Xiyun Jin, Zhaochun Xu, Liran Juan, Zheng Zhang, Yuou Li, Renqiang Liu, Yiqun Li, Chang Xu, Kexin Ma, Huimin Cao, Jingwei Wang, Pingping Wang, Zhigao Bu, Qinghua Jiang

Protein & Cell

2020

LncSpA: LncRNA Spatial Atlas of Expression across Normal and Cancer Tissues

Dezhong Lv, Kang Xu, Xiyun Jin, Junyi Li, Yuchen Shi, Mengying Zhang, Xiaoyan Jin, Yongsheng Li, Juan Xu, Xia Li

Cancer Research

DOI

2020

CeRNASeek: an R package for identification and analysis of ceRNA regulation

Mengying Zhang, Xiyun Jin, Junyi Li, Yi Tian, Qi Wang, Xia Li, Xinhui Li, Juan Xu, Xia Li, Xia Li, Xia Li

Briefings in Bioinformatics

DOI

2018

Characterization of Transcriptome Transition Associates Long Noncoding RNAs with Glioma Progression

Xia Li, Tiantongfei Jiang, Jing Bai, Junyi Li, Tianshi Wang, Jun Ying Xiao, Yi Tian, Xiyun Jin, Tingting Shao, Juan Xu, Lingchao Chen, Lihua Wang, Yongsheng Li

Molecular Therapy — Nucleic Acids

DOI

2018

FACER: comprehensive molecular and functional characterization of epigenetic chromatin regulators

Jianping Lu, Juan Xu, Junyi Li, Tao Pan, Jing Bai, Liqiang Wang, Xiyun Jin, Xia Li, Yunpeng Zhang, Yongsheng Li, Nidhi Sahni, Xia Li

Nucleic Acids Research

DOI

2018

Landscape of the long non-coding RNA transcriptome in human heart

Chunjie Jiang, Na Ding, Junyi Li, Xiyun Jin, Xia Li, Tao Pan, Caiqin Huo, Yongsheng Li, Juan Xu, Xia Li

Briefings in Bioinformatics

DOI

2018

Survey of miRNA-miRNA cooperative regulation principles across cancer types

Tingting Shao, Guangjuan Wang, Hong Chen, Yunjin Xie, Xiyun Jin, Jing Bai, Juan Xu, Xia Li, Jian Hua Huang, Yan Jin, Yongsheng Li

Briefings in Bioinformatics

DOI

2017

LncMAP: Pan-cancer atlas of long noncoding RNA-mediated transcriptional network perturbations

Yongsheng Li, Xia Li, Zishan Wang, Tao Pan, Nidhi Sahni, Xiyun Jin, Guangjuan Wang, Junyi Li, Xiangyi Zheng, Yunpeng Zhang, Juan Xu, Song Yi, Xia Li

Nucleic Acids Research

DOI

2017

Systematic review regulatory principles of non-coding RNAs in cardiovascular diseases

Yongsheng Li, Caiqin Huo, Tao Pan, Xia Li, Xiyun Jin, Xia Li, Juan Chen, Jinwen Zhang, Zheng Guo, Juan Xu, Xia Li

Briefings in Bioinformatics

DOI

书籍章节

2018

Methods for Identification of Protein-RNA Interaction

Juan Xu, Zishan Wang, Xiyun Jin, Lili Li, Tao Pan

Advances in experimental medicine and biology

DOI

靳喜云

精选作品

期刊论文

Multi-layer molecular profiling defines an immune-active colorectal cancer subtype with therapeutic relevance

CellSNVReg: a multidimensional resource for SNV-mediated regulatory perturbations in single-cell and spatial omics

TriCLFF: a multi-modal feature fusion framework using contrastive learning for spatial domain identification

Identifying T cell antigen at the atomic level with graph convolutional network

Dimension reduction, cell clustering, and cell–cell communication inference for single-cell transcriptomics with DcjComm

Deciphering cell–cell communication at single-cell resolution for spatial transcriptomics with subgraph-based graph attention network

Supplementary Figures S1-S8 from The Deep Learning Framework iCanTCR Enables Early Cancer Detection Using the T-cell Receptor Repertoire in Peripheral Blood

The Deep Learning Framework iCanTCR Enables Early Cancer Detection Using the T-cell Receptor Repertoire in Peripheral Blood

Spatial transcriptome analysis of long non-coding RNAs reveals tissue specificity and functional roles in cancer

Single cell RNA and immune repertoire profiling of COVID-19 patients reveal novel neutralizing antibody

LncSpA: LncRNA Spatial Atlas of Expression across Normal and Cancer Tissues

CeRNASeek: an R package for identification and analysis of ceRNA regulation

Characterization of Transcriptome Transition Associates Long Noncoding RNAs with Glioma Progression

FACER: comprehensive molecular and functional characterization of epigenetic chromatin regulators

Landscape of the long non-coding RNA transcriptome in human heart

Survey of miRNA-miRNA cooperative regulation principles across cancer types

LncMAP: Pan-cancer atlas of long noncoding RNA-mediated transcriptional network perturbations

Systematic review regulatory principles of non-coding RNAs in cardiovascular diseases

书籍章节

Methods for Identification of Protein-RNA Interaction

研究方向