林润茂｜海南大学｜学者主页

2026

TGP-WEB: A Server for Automatic Gene Prediction of Trichoderma Genomes.

Li Zhang, Housong Cui, Song Yu, Renlan Yan, Bao Wang, Runmao Lin, Tong-hua Liu

Phytopathology

DOI

2026

Comparative genomics of different haplotypes in Ditylenchus destructor provides insights into their host preferences

Zhengyang Zhao, Hongxia Zhang, Jiayu Wang, Ning Luo, Huixia Li, Runmao Lin, Bing-Yan Xie

Communications Biology

DOI

2026

WMAF: One novel method for whole mitogenome alignment in fungi and its application in phylogenetic analysis.

Housong Cui, Li Zhang, Tong-hua Liu, Runmao Lin

Fungal Genetics and Biology

DOI

2026

A spatiotemporal atlas of giant-cell formation during Meloidogyne incognita infection in tomato roots

Lijun Jiang, Dan Chen, Qian-Qian Shi, Tao Huang, Runmao Lin, Jiang-Zhou Li, Kuai Dai, Chenyang Wang, Wenzheng Ling, Chao Feng, Haichao Cao, Robert Y. L. Wang, Bing-Yan Xie, Jin-Guang Yang

Molecular Horticulture

DOI

2026

Breaking the trade-off: Trichoderma effector Tahfb1 dual-targets growth and defense pathways via Hsp70L.

Ya-Ping Yin, Yuhang Fu, He Wu, Liping Feng, Lijuan He, Runmao Lin, Rui Wang, Zhengbin Tang, Baoping Zhu, Ju-Mei Hou, Jing Zhao, Tong Liu

Pesticide Biochemistry and Physiology

DOI

2026

Pangenomic sequencing and gene-unit genome-wide association study insights into genome plasticity and gene functions in Magnaporthe oryzae.

Yi Wang, Qi Wu, Jin-bin Li, Pei Hu, Qi Liu, Aijia Lin, Runmao Lin, Lin-Ao Liu, Chun Wang, Houxiang Kang, Cheng-Yun Li

Journal of Advanced Research

DOI

2025

Discovery of an SQS-PSY Domain-Containing Protein in Meloidogyne incognita Reveals Its Function in Parasitism

Jun Lu, Runmao Lin, Yunlong Ma, Xin Sun, Yangmiao Jiao, Xin-Yue Cheng, Bing-Yan Xie

International Journal of Molecular Sciences

DOI

2025

The Diversity and Keystone Species of Cucumber Rhizosphere Microbiome: Unveiling Their Role in Driving Cucumber Growth and Microbial Communities.

Ya-Ping Yin, Raja Asad Ali Khan, Liping Li, Yinggu Wu, Chun Li, Yue-Jian Li, Sen Ren, Jing Zhang, Weiwei Wang, Runmao Lin, Manman Zhang, Xiao-Jun Liu, Ju-Mei Hou, Gen-Yun Liang

New Biotechnology

DOI

2025

Comparative transcriptomics of susceptible and resistant Cucumis metuliferus upon Meloidogyne incognita infection

Xiaoxiao Xie, Jun Lu, Runmao Lin, Jian Ling, Zhen-Chuan Mao, Jian-Long Zhao, Qihong Yang, Shijie Zheng, Yan Li, Richard G. F. Visser, Yuling Bai, Bing-Yan Xie

Planta

DOI

2025

A Trichoderma microRNA-like RNA suppresses a chitinase gene in Solanum lycopersicum to escape host immunity during early root colonization.

Ming Xue, Rui Wang, Ju-Mei Hou, Raja Asad Ali Khan, Jie Chen, Runmao Lin, Lin Wang, Hong-Wei Zhao, G. Ahammed, Tong Liu

Plant Physiology

DOI

2024

Development of Machine Learning Methods for Accurate Prediction of Plant Disease Resistance

Qi Liu, Shi-Min Zuo, Sha-Sha Peng, Hao Zhang, Ye Peng, Wei Li, Ye-Hui Xiong, Runmao Lin, Zhi-Ming Feng, Hui-Hui Li, Jun Yang, Guo-Liang Wang, Houxiang Kang

Engineering

DOI

2024

Effects of two Bacillus velezensis strains isolated from different sources on the growth of Capsicum annum

Bao Wang, Shimeng Tan, Ming-De Wu, Yujie Feng, Wan-Rong Yan, Qian Yun, Xuncong Ji, Runmao Lin, Zhi-Xiang Zhao

Frontiers in Microbiology

DOI

2024

Assembly, Annotation, and Comparative Analysis of Mitochondrial Genomes in Trichoderma

Xiao-Ting Wang, Zhiyin Wang, Fanxing Yang, Runmao Lin, Tong-hua Liu

International Journal of Molecular Sciences

DOI

2024

Parasitism of Hirsutella rhossiliensis on Different Nematodes and Its Endophytism Promoting Plant Growth and Resistance against Root-Knot Nematodes

Xin Sun, Jia-Qiang Liao, Jun Lu, Runmao Lin, Manling Zou, Bing-Yan Xie, Xin-Yue Cheng

Journal of Fungi

DOI

2023

Mitochondrial‐targeting effector RsIA_CtaG/Cox11 in Rhizoctonia solani AG‐1 IA has two functions: plant immunity suppression and cell death induction mediated by a rice cytochrome c oxidase subunit

Danhua Zhang, Runmao Lin, Naoki Yamamoto, Zhaoyilin Wang, Hui Lin, Kazunori Okada, Yao Liu, Xing Xiang, Tengda Zheng, Haoxi Zheng, Xiaoqun Yi, Y. Noutoshi, Aiping Zheng

Molecular plant pathology

DOI

2023

The unique sugar conversion and complex CAZyme system of Trichoderma brev T069 during solid-state fermentation of cassava peel

Cheng Zhang, Runmao Lin, Ju-Mei Hou, R. Khan, Xin-Yu Li, Hongyan Wei, Jie Chen, Rui Wang, Jing Zhang, Tong Liu

Industrial crops and products (Print)

DOI

2023

A New Insight into 6-Pentyl-2H-pyran-2-one against Peronophythora litchii via TOR Pathway

Ying Wu, Xinyu Li, Li-ping Dong, Tong Liu, Zhengbin Tang, Runmao Lin, Justice Norvienyeku, M. Xing

Journal of Fungi

DOI

2023

URA3 as a Selectable Marker for Disruption and Functional Assessment of PacC Gene in the Entomopathogenic Fungus Isaria javanica

Manling Zou, Bei Xin, Xin Sun, Runmao Lin, Jun Lu, Jing Qi, Bing-Yan Xie, Xin-Yue Cheng

Journal of Fungi

DOI

2022

Roles of Species-Specific Legumains in Pathogenicity of the Pinewood Nematode Bursaphelenchus xylophilus

Xi Zhang, Runmao Lin, Jian Ling, Yunsheng Wang, F. Qin, Jun Lu, Xin Sun, Manling Zou, Jing Qi, Bing-Yan Xie, Xin-Yue Cheng

International Journal of Molecular Sciences

DOI

2022

Genome Sequence Resource of Sarocladium terricola TR, an Endophytic Fungus as a Potential Biocontrol Agent Against Meloidogyne incognita.

Xue-Liang Tian, Ting-Ting Sun, Runmao Lin, R. Liu, Yu-hong Yang, Bing-Yan Xie, Zhen-Chuan Mao

Molecular Plant-Microbe Interactions

DOI

2022

Secreted Glycosyltransferase RsIA_GT of Rhizoctonia solani AG-1 IA Inhibits Defense Responses in Nicotiana benthamiana

Danhua Zhang, Zhaoyilin Wang, Naoki Yamamoto, Mingyue Wang, Xiaoqun Yi, Ping Li, Runmao Lin, Zohreh Nasimi, K. Okada, K. Mochida, Y. Noutoshi, Ai-Ping Zheng

Pathogens

DOI

2022

Chromosomal-level genome assembly of potato tuberworm, Phthorimaea operculella: a pest of solanaceous crops

Meng-Di Zhang, Xin-Yue Cheng, Runmao Lin, Bing-Yan Xie, R. Nauen, S. Rondon, J. A. Zavala, S. Palli, Su-Hua Li, Xing-Yao Xiong, Wen-Wu Zhou, Yu-Lin Gao

Scientific Data

DOI

2021

Comparative Mitogenomic Analysis and the Evolution of Rhizoctonia solani Anastomosis Groups

Runmao Lin, Yuan Xia, Yao Liu, Danhua Zhang, X. Xiang, Xianyu Niu, Linjia Jiang, Xiaolin Wang, Ai-Ping Zheng

Frontiers in Microbiology

DOI

2019

Genomic Characterization Provides New Insights Into the Biosynthesis of the Secondary Metabolite Huperzine a in the Endophyte Colletotrichum gloeosporioides Cg01

Xin-Cong Kang, Chichuan Liu, Pengyuan Shen, Li-Qin Hu, Runmao Lin, Jian Ling, Xing-Yao Xiong, Bing-Yan Xie, Dong-Bo Liu

Frontiers in Microbiology

DOI

2019

Integrative transcriptome analysis discloses the molecular basis of a heterogeneous fungal phytopathogen complex, Rhizoctonia solani AG-1 subgroups

Naoki Yamamoto, Yanran Wang, Runmao Lin, Yueyang Liang, Yao Liu, Jun Zhu, Ling-Xia Wang, Shi-Quan Wang, Huai-Nian Liu, Qi-Ming Deng, Shuangcheng Li, Ping Li, Ai-Ping Zheng

Scientific Reports

DOI

2019

Genome sequence of Isaria javanica and comparative genome analysis insights into family S53 peptidase evolution in fungal entomopathogens

Runmao Lin, Xi Zhang, Bei Xin, Manling Zou, Yao-Yao Gao, F. Qin, Qiong-Bo Hu, Bing-Yan Xie, Xin-Yue Cheng

Applied Microbiology and Biotechnology

DOI

2019

Antibacterial Radicicol Analogues from Pochonia chlamydosporia and Their Biosynthetic Gene Cluster.

F. Qin, Yan Li, Runmao Lin, Xi Zhang, Zhen-Chuan Mao, Jian Ling, Yu-hong Yang, Xiao Zhuang, S. Du, Xin-Yue Cheng, Bing-Yan Xie

Journal of Agricultural and Food Chemistry

DOI

2018

Genome and secretome analysis of Pochonia chlamydosporia provide new insight into egg-parasitic mechanisms

Runmao Lin, F. Qin, Baoming Shen, Qian-Qian Shi, Chichuan Liu, Xi Zhang, Yangmiao Jiao, Jun Lu, Yao-Yao Gao, M. Suarez-Fernandez, F. Lopez-Moya, L. Lopez-Llorca, Gang Wang, Zhen-Chuan Mao, Jian Ling, Yu-hong Yang, Xin-Yue Cheng, Bing-Yan Xie

Scientific Reports

DOI

2018

Rediscovery and analysis of Phytophthora carbohydrate esterase (CE) genes revealing their evolutionary diversity.

Kun Qian, Deng-hui Li, Runmao Lin, Qian-Qian Shi, Zhen-Chuan Mao, Yu-hong Yang, Dong-Xin Feng, Bing-Yan Xie

DOI

2018

Comparative whole-genome analysis reveals genetic adaptation of the invasive pinewood nematode

Jiarui Li, Xin-Yue Cheng, Runmao Lin, Shi-Jun Xiao, Xin-Xin Yi, Zhen-Chuan Mao, Xi Zhang, Jian Ling, Xiao-Jun Kou, Xia Yan, Ji Luo, Fei-Xue Cheng, Yilong Li, Lai-Fa Wang, Nan-Sheng Chen, Bing-Yan Xie

bioRxiv

DOI

2018

The Novel Secreted Meloidogyne incognita Effector MiISE6 Targets the Host Nucleus and Facilitates Parasitism in Arabidopsis

Qian-Qian Shi, Zhen-Chuan Mao, Xiaoping Zhang, Jian Ling, Runmao Lin, Xi Zhang, Rui Liu, Yunsheng Wang, Yu-hong Yang, Xin-Yue Cheng, Bing-Yan Xie

Frontiers in Plant Science

DOI

2018

A Meloidogyne incognita effector MiISE5 suppresses programmed cell death to promote parasitism in host plant

Qian-Qian Shi, Zhen-Chuan Mao, Xi Zhang, Xiaoping Zhang, Yunsheng Wang, Jian Ling, Runmao Lin, Deng-hui Li, Xin-Cong Kang, Wenxian Sun, Bing-Yan Xie

Scientific Reports

DOI

2017

Comparative Analysis of Pochonia chlamydosporia Mitogenome Reveals Dynamic Mitochondrial Evolution of the Nematophagous Fungi in Hypocreales

Runmao Lin, Xin-Yue Cheng, Bing-Yan Xie

DOI

2017

Complete mitogenome of the high ethanol production fungus Fusarium oxysporum Mh2-2

L. Zeng, Chichuan Liu, Runmao Lin, Xin-Cong Kang, Bing-Yan Xie, Xing-Yao Xiong

Mitochondrial DNA Part B: Resources

DOI

2017

The complete mitochondrial genome of the nematophagous fungus Lecanicillium saksenae

Bei Xin, Runmao Lin, Baoming Shen, Zhen-Chuan Mao, Xin-Yue Cheng, Bing-Yan Xie

Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis

DOI

2016

The role of leucinostatins in antagonism between P . lilacinum and Phytophthora .

Gang Wang, Zhi-Guo Liu, Runmao Lin, Erfeng Li, Zhen-Chuan Mao, Jian Ling, Yu-hong Yang, Wen-Bing Yin, Bing-Yan Xie

DOI

2016

HPLC profiles (UV 210 nm) of culture extracts from the wild type P . lilacinum strain and mutants when grown in PDB medium.

Gang Wang, Zhi-Guo Liu, Runmao Lin, Erfeng Li, Zhen-Chuan Mao, Jian Ling, Yu-hong Yang, Wen-Bing Yin, Bing-Yan Xie

DOI

2016

Comprehensive analysis of microRNA-Seq and target mRNAs of rice sheath blight pathogen provides new insights into pathogenic regulatory mechanisms

Runmao Lin, Li-Ye He, Jiayu He, P. Qin, Yanran Wang, Qi-Ming Deng, Xiaoting Yang, Shuangcheng Li, Shi-Quan Wang, Wen-Ming Wang, Huai-Nian Liu, Ping Li, Ai-Ping Zheng

DNA Research

DOI

2016

Biosynthesis of Antibiotic Leucinostatins in Bio-control Fungus Purpureocillium lilacinum and Their Inhibition on Phytophthora Revealed by Genome Mining

G. Wang, Zhi-Guo Liu, Runmao Lin, Erfeng Li, Zhen-Chuan Mao, Jian Ling, Yu-hong Yang, Wen-Bing Yin, Bing-Yan Xie

PLoS Pathogens

DOI

2016

A putative biosynthetic pathway for leucinostatin A.

Gang Wang, Zhi-Guo Liu, Runmao Lin, Erfeng Li, Zhen-Chuan Mao, Jian Ling, Yu-hong Yang, Wen-Bing Yin, Bing-Yan Xie

DOI

2016

Genome feature of the three P . lilacinum isolates.

Gang Wang, Zhi-Guo Liu, Runmao Lin, Erfeng Li, Zhen-Chuan Mao, Jian Ling, Yu-hong Yang, Wen-Bing Yin, Bing-Yan Xie

DOI

2016

Lifestyles of nematophagous P. lilacinum and the structures of leucinostatins.

Gang Wang, Zhi-Guo Liu, Runmao Lin, Erfeng Li, Zhen-Chuan Mao, Jian Ling, Yu-hong Yang, Wen-Bing Yin, Bing-Yan Xie

DOI

2016

The complete mitochondrial genome of the nematophagous fungus Acremonium implicatum

Yu-Rong Yao, Runmao Lin, Xue-Liang Tian, Baoming Shen, Zhen-Chuan Mao, Bing-Yan Xie

Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis

DOI

2016

Phylogenomic relationships and orthologous gene clusters.

Gang Wang, Zhi-Guo Liu, Runmao Lin, Erfeng Li, Zhen-Chuan Mao, Jian Ling, Yu-hong Yang, Wen-Bing Yin, Bing-Yan Xie

DOI

2016

Genomic synteny of PLBJ-1 and PLFJ-1.

Gang Wang, Zhi-Guo Liu, Runmao Lin, Erfeng Li, Zhen-Chuan Mao, Jian Ling, Yu-hong Yang, Wen-Bing Yin, Bing-Yan Xie

DOI

2016

The boundary of the lcs cluster in P . lilacinum with its homologues in T . ophioglossoides .

Gang Wang, Zhi-Guo Liu, Runmao Lin, Erfeng Li, Zhen-Chuan Mao, Jian Ling, Yu-hong Yang, Wen-Bing Yin, Bing-Yan Xie

DOI

2016

Description of the genes in the leucinostatin biosynthetic cluster.

Gang Wang, Zhi-Guo Liu, Runmao Lin, Erfeng Li, Zhen-Chuan Mao, Jian Ling, Yu-hong Yang, Wen-Bing Yin, Bing-Yan Xie

DOI

2015

Development of a high-efficiency gene knockout system for Pochonia chlamydosporia.

Baoming Shen, Jiling Xiao, L. Dai, Yonghong Huang, Zhen-Chuan Mao, Runmao Lin, Yu-Rong Yao, Bing-Yan Xie

Microbiology Research

DOI

2015

Analysis of the complete mitochondrial genome of Pochonia chlamydosporia suggests a close relationship to the invertebrate-pathogenic fungi in Hypocreales

Runmao Lin, Chichuan Liu, Baoming Shen, Miao Bai, Jian Ling, Guo-Hua Chen, Zhen-Chuan Mao, Xin-Yue Cheng, Bing-Yan Xie

BMC Microbiology

DOI

2014

Global protein-protein interaction network of rice sheath blight pathogen.

D. Lei, Runmao Lin, Chuan-Chun Yin, Ping Li, Ai-Ping Zheng

Journal of Proteome Research

DOI

2013

The evolution and pathogenic mechanisms of the rice sheath blight pathogen

Ai-Ping Zheng, Runmao Lin, Danhua Zhang, P. Qin, Lizhi Xu, Peng Ai, L. Ding, Yanran Wang, Yao Chen, Yao Liu, Zhigang Sun, Haitao Feng, Xiaoxing Liang, R. Fu, Changqing Tang, Qiao Li, Jing Zhang, Ze-Lin Xie, Qi-Ming Deng, Shuangcheng Li, Shi-Quan Wang, Jun Zhu, Ling-Xia Wang, Huai-Nian Liu, Ping Li

Nature Communications

DOI

精选作品

期刊论文

TGP-WEB: A Server for Automatic Gene Prediction of Trichoderma Genomes.

Comparative genomics of different haplotypes in Ditylenchus destructor provides insights into their host preferences

WMAF: One novel method for whole mitogenome alignment in fungi and its application in phylogenetic analysis.

A spatiotemporal atlas of giant-cell formation during Meloidogyne incognita infection in tomato roots

Breaking the trade-off: Trichoderma effector Tahfb1 dual-targets growth and defense pathways via Hsp70L.

Pangenomic sequencing and gene-unit genome-wide association study insights into genome plasticity and gene functions in Magnaporthe oryzae.

Discovery of an SQS-PSY Domain-Containing Protein in Meloidogyne incognita Reveals Its Function in Parasitism

The Diversity and Keystone Species of Cucumber Rhizosphere Microbiome: Unveiling Their Role in Driving Cucumber Growth and Microbial Communities.

Comparative transcriptomics of susceptible and resistant Cucumis metuliferus upon Meloidogyne incognita infection

A Trichoderma microRNA-like RNA suppresses a chitinase gene in Solanum lycopersicum to escape host immunity during early root colonization.

Development of Machine Learning Methods for Accurate Prediction of Plant Disease Resistance

Effects of two Bacillus velezensis strains isolated from different sources on the growth of Capsicum annum

Assembly, Annotation, and Comparative Analysis of Mitochondrial Genomes in Trichoderma

Parasitism of Hirsutella rhossiliensis on Different Nematodes and Its Endophytism Promoting Plant Growth and Resistance against Root-Knot Nematodes

Mitochondrial‐targeting effector RsIA_CtaG/Cox11 in Rhizoctonia solani AG‐1 IA has two functions: plant immunity suppression and cell death induction mediated by a rice cytochrome c oxidase subunit

The unique sugar conversion and complex CAZyme system of Trichoderma brev T069 during solid-state fermentation of cassava peel

A New Insight into 6-Pentyl-2H-pyran-2-one against Peronophythora litchii via TOR Pathway

URA3 as a Selectable Marker for Disruption and Functional Assessment of PacC Gene in the Entomopathogenic Fungus Isaria javanica

Roles of Species-Specific Legumains in Pathogenicity of the Pinewood Nematode Bursaphelenchus xylophilus

Genome Sequence Resource of Sarocladium terricola TR, an Endophytic Fungus as a Potential Biocontrol Agent Against Meloidogyne incognita.

Secreted Glycosyltransferase RsIA_GT of Rhizoctonia solani AG-1 IA Inhibits Defense Responses in Nicotiana benthamiana

Chromosomal-level genome assembly of potato tuberworm, Phthorimaea operculella: a pest of solanaceous crops

Comparative Mitogenomic Analysis and the Evolution of Rhizoctonia solani Anastomosis Groups

Genomic Characterization Provides New Insights Into the Biosynthesis of the Secondary Metabolite Huperzine a in the Endophyte Colletotrichum gloeosporioides Cg01

Integrative transcriptome analysis discloses the molecular basis of a heterogeneous fungal phytopathogen complex, Rhizoctonia solani AG-1 subgroups

Genome sequence of Isaria javanica and comparative genome analysis insights into family S53 peptidase evolution in fungal entomopathogens

Antibacterial Radicicol Analogues from Pochonia chlamydosporia and Their Biosynthetic Gene Cluster.

Genome and secretome analysis of Pochonia chlamydosporia provide new insight into egg-parasitic mechanisms

Rediscovery and analysis of Phytophthora carbohydrate esterase (CE) genes revealing their evolutionary diversity.

Comparative whole-genome analysis reveals genetic adaptation of the invasive pinewood nematode

The Novel Secreted Meloidogyne incognita Effector MiISE6 Targets the Host Nucleus and Facilitates Parasitism in Arabidopsis

A Meloidogyne incognita effector MiISE5 suppresses programmed cell death to promote parasitism in host plant

Comparative Analysis of Pochonia chlamydosporia Mitogenome Reveals Dynamic Mitochondrial Evolution of the Nematophagous Fungi in Hypocreales

Complete mitogenome of the high ethanol production fungus Fusarium oxysporum Mh2-2

The complete mitochondrial genome of the nematophagous fungus Lecanicillium saksenae

The role of leucinostatins in antagonism between P . lilacinum and Phytophthora .

HPLC profiles (UV 210 nm) of culture extracts from the wild type P . lilacinum strain and mutants when grown in PDB medium.

Comprehensive analysis of microRNA-Seq and target mRNAs of rice sheath blight pathogen provides new insights into pathogenic regulatory mechanisms

Biosynthesis of Antibiotic Leucinostatins in Bio-control Fungus Purpureocillium lilacinum and Their Inhibition on Phytophthora Revealed by Genome Mining

A putative biosynthetic pathway for leucinostatin A.

Genome feature of the three P . lilacinum isolates.

Lifestyles of nematophagous P. lilacinum and the structures of leucinostatins.

The complete mitochondrial genome of the nematophagous fungus Acremonium implicatum

Phylogenomic relationships and orthologous gene clusters.

Genomic synteny of PLBJ-1 and PLFJ-1.

The boundary of the lcs cluster in P . lilacinum with its homologues in T . ophioglossoides .

Description of the genes in the leucinostatin biosynthetic cluster.

Development of a high-efficiency gene knockout system for Pochonia chlamydosporia.

Analysis of the complete mitochondrial genome of Pochonia chlamydosporia suggests a close relationship to the invertebrate-pathogenic fungi in Hypocreales

Global protein-protein interaction network of rice sheath blight pathogen.

The evolution and pathogenic mechanisms of the rice sheath blight pathogen

会议论文

TGP-WEB:木霉属物种基因预测在线分析工具

基于染色体水平基因组研究木霉的进化及其对立枯丝核菌的重寄生作用

真菌线粒体全基因组序列比对新方法WMAF及其在构建系统发育树中的应用

TrichodermaGGD:木霉种质资源分子鉴定与基因组学数据库

生防木霉菌线粒体基因组研究

研究方向