杨平仿｜湖北大学｜学者主页

2026

The OsNTL3 ‐ WRKY53 ‐ CatA module confers thermotolerance in rice

Xuanlin Gao, Shuaizu An, Zemin Ma, Mengyuan Chen, Wenya Xie, Ming Li, Feng Yu, Shiyou Lü, Lei Zhou, Aiqing You, Pingfang Yang, Yinggen Ke

New Phytologist

DOI

2026

Rhizosphere Microbiome‐Mediated Drought Resilience in Cereals: Implications for Grain Nutrition, Yield, and Tolerance

Muhammad Saeed, Xizhi Huang, Ghazala Mustafa, Ming Li, Pingfang Yang

Plant Cell & Environment

DOI

2026

Identification of OsCsLF6 Gene Responsible for Rice Seed Submergence Germination Through Genome‐Wide Association Analysis

Xin Wang, Li-Na Feng, Jiaya Cong, Anni Luo, Shiyou Lü, Feng Yu, Pingfang Yang

Plant Cell & Environment

DOI

2026

Genome-Wide Characterization and Expression Analysis of Heat Shock Transcription Factors in Two Cultivars of Rice (Oryza sativa L.) Under Heat Stress

Almas Danish, Muhammad Saeed, Pingfang Yang

International Journal of Molecular Sciences

DOI

2026

Proteomic decoding of maize responses to microplastics and copper stress under iron oxide nanoparticles

Umair Saeed, Pingfang Yang, Ming Li, Muhammad Saeed, Muhammad Saad Bashir, Junaid Shehzad, Murtaza Hasan, Riffat Naseem Malik, Ghazala Mustafa

Plant and Soil

DOI

2026

Molecular Insights into Zinc Uptake and Accumulation in Wheat (Triticum aestivum L.): From Deficiency Responses to Biofortification Strategies

Muhammad Saeed, Pingfang Yang

Journal of Plant Growth Regulation

DOI

2026

FeONPs-mediated alleviation of salt stress in rice through ROS scavenging and metal homeostasis

Huma Arshad, Pingfang Yang, Ming Li, Junaid Shehzad, Sunbal Khalil Chaudhari, Abid Majeed, Murtaza Hasan, Ghazala Mustafa

New Journal of Chemistry

DOI

2025

Recent Advances and Application of Machine Learning for Protein–Protein Interaction Prediction in Rice: Challenges and Future Perspectives

Sarah Bernard Merumba, Habiba Omar Ahmed, Dong Fu, Pingfang Yang

Proteomes

DOI

2025

Study on Rice Submergence Germination Through the Combination of RNA-Seq and Genome Resequencing Strategies

Xin Wang, Feng Yu, Li-Na Feng, Mingdong Zhu, Pingfang Yang

Plants

DOI

2025

An MYB114-like transcription factor in Nelumbo nucifera could positively regulate anthocyanin accumulation together with NnTT8

Jiao Deng, Mengyue Su, Rebecca Njeri Damaris, Pingfang Yang

Industrial Crops and Products

DOI

2025

Abiotic and Biotic Stress of the Crops and Horticultural Plants

Pingfang Yang

Plants

DOI

2025

Research progress of peptides discovery and function in resistance to abiotic stress in plant

Yucong Cao, Pingfang Yang, Ming Li

Stress Biology

DOI

2025

Identification of Proteoforms Related to Nelumbo nucifera Flower Petaloid Through Proteogenomic Strategy

Zhongyuan Lin, Jiantao Shu, Yu Qin, Deng-Ke CAo, Jiao Deng, Pingfang Yang

Proteomes

DOI

2025

Deciphering the core shunt mechanism in Arabidopsis cuticular wax biosynthesis and its role in plant environmental adaptation

Shipeng Li, Xuanhao Zhang, Haodong Huang, Mou Yin, Matthew A. Jenks, Dylan K. Kosma, Pingfang Yang, Xianpeng Yang, Huayan Zhao, Shiyou Lü

Nature Plants

DOI

2025

Mechanistic insights into hybrid rice Liangyou 287's superior performance: transcriptomic and metabolic evidence for rapid starch biosynthesis during grain filling

Ming Li, Dong Fu, Wenhua Wu, Shiyou Lü, Pingfang Yang

Seed Biology

DOI

2024

Plant secondary metabolites-mediated plant defense against bacteria and fungi pathogens

Wenjuan Yang, Wenjuan Yang, Lu Zhang, Yong Yang, Pingfang Yang, Haibo Xiang, Pingfang Yang

Plant Physiology and Biochemistry

DOI

2024

SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 13 (SPL13) together with SPL9 redundantly regulates wax biosynthesis under drought stress

Haodong Huang, Minglü Zheng, Matthew A. Jenks, Pingfang Yang, Huayan Zhao, Shiyou Lü

Journal of Experimental Botany

DOI

2024

Molecular mechanisms of rice seed germination

Dong Fu, Wenhua Wu, Ghazala Mustafa, Yong Yang, Pingfang Yang

New Crops

DOI

2024

OsMBF1a Facilitates Seed Germination by Regulating Biosynthesis of Gibberellic Acid and Abscisic Acid in Rice

Xin Wang, Ziyun Chen, Jinghua Guo, Han Xiao, X. Ji, Meicheng Ke, Feng Yu, Pingfang Yang

International Journal of Molecular Sciences

DOI

2024

An AP2/ERF transcription factor confers chilling tolerance in rice

Liang Xu, Lijia Yang, Aipeng Li, Jiazhuo Guo, Huanyu Wang, Haoyue Qi, Ming Li, Pingfang Yang, Shiyong Song

Science Advances

DOI

2024

DNA Methylation Dynamics in Response to Drought Stress in Crops

Xiaolan Rao, Shengli Yang, Shiyou Lü, Pingfang Yang

Plants

DOI

2024

Proteomics profiling reveals the detoxification and tolerance behavior of two bread wheat (Triticum aestivum L.) varieties under arsenate stress

Muhammad Saeed, Pingfang Yang, Ming Li, Umar Masood Quraishi, Ghazala Mustafa, Riffat Naseem Malik

Environmental and Experimental Botany

DOI

2024

The Arabidopsis cytochrome P450 enzyme CYP96A4 is involved in the wound‐induced biosynthesis of cuticular wax and cutin monomers

Haodong Huang, Yang Wang, Pingfang Yang, Huayan Zhao, Matthew A. Jenks, Shiyou Lü, Xianpeng Yang

The Plant Journal

DOI

2024

Salt induced protein dynamics in young rice roots of osmybcc-1 mutant and its involvement in salt stress

Rebecca Njeri Damaris, Fengxue Tang, Xiaorong Fan, Zhongming Fang, Pingfang Yang, Ming Li

Plant Stress

DOI

2023

Exploring domestication pattern in lotus: insights from dispensable genome assembly

Huan-Huan Qi, Feng Yu, Shi-You Lu, R. Damaris, Guo-Qing Dong, Pingfang Yang

Frontiers in Plant Science

DOI

2023

ENHANCED DISEASE SUSCEPTIBILITY 1 promotes hydrogen peroxide scavenging to enhance rice thermotolerance

Min Liao, Ze-Min Ma, Yuanrong Kang, Biaoming Zhang, Xuanlin Gao, Feng Yu, Pingfang Yang, Ying-Gen Ke

Plant Physiology

DOI

2023

Identifying RNA Modifications by Direct RNA Sequencing Reveals Complexity of Epitranscriptomic Dynamics in Rice

Feng Yu, Huan-Huan Qi, Li Gao, Sen Luo, Rebecca Njeri Damaris, Ying-Gen Ke, Wen-Hua Wu, Pingfang Yang

Genomics, Proteomics & Bioinformatics

DOI

2023

Evolution and diversification of CaM/CML gene family in green plants.

Qinghua Li, Li Gao, Feng Yu, Shi-You Lu, Pingfang Yang

Plant physiology and biochemistry : PPB

DOI

2023

Regulatory network of rice in response to heat stress and its potential application in breeding strategy

Ze-Min Ma, Jun Lv, Wen-Hua Wu, Dong Fu, Shi-You Lu, Ying-Gen Ke, Pingfang Yang

Molecular breeding

DOI

2023

Proteomic and metabolomic analyses showing the differentially accumulation of NnUFGT2 is involved in the petal red-white bicolor pigmentation in lotus (Nelumbo nucifera).

Jiao Deng, Mengyue Su, Xinyi Zhang, Xue-Lian Liu, R. Damaris, Shiyou Lv, Pingfang Yang

Plant physiology and biochemistry : PPB

DOI

2023

The high-quality genome of lotus reveals tandem duplicate genes involved in stress response and secondary metabolites biosynthesis

Huan-Huan Qi, Feng Yu, Jiao Deng, Liang-Sheng Zhang, Pingfang Yang

Horticulture Research

DOI

2023

Exploring Splicing Variants and Novel Genes in Sacred Lotus Based on RNA-seq Data

Xinyi Zhang, Zimeng Yu, Pingfang Yang

Phyton

DOI

2022

Genome-wide Identification and Expression Analysis of CaM/CML Gene Family in Sacred Lotus (Nelumbo nucifera)

Li Gao, R. Damaris, Feng Yu, Pingfang Yang

Plant Molecular Biology Reporter

DOI

2022

A stress-associated protein OsSAP8 modulates gibberellic acid biosynthesis by reducing the promotive effect of transcription factor OsbZIP58 on OsKO2.

Ming Li, Hui Zhang, Dongli He, R. Damaris, Pingfang Yang

Journal of Experimental Botany

DOI

2022

Editorial: Proteomics of Post-translational Modifications in Plants

Pingfang Yang

Frontiers in Plant Science

DOI

2022

TMT-based quantitative proteomic and physiological analyses on lotus plumule of artificially aged seed in long-living sacred lotus Nelumbo nucifera.

Dongli He, Mengmeng Cai, Meihui Liu, Pingfang Yang

Journal of Proteomics

DOI

2022

Integration of metabolomics and transcriptomics analyses investigates the accumulation of secondary metabolites in maturing seed plumule of sacred lotus (Nelumbo nucifera).

Dongli He, X. Rao, Jiao Deng, R. Damaris, Pingfang Yang

Food Research International

DOI

2022

Studies on Lotus Genomics and the Contribution to Its Breeding

Huan-Huan Qi, Feng Yu, Jiao Deng, Pingfang Yang

International Journal of Molecular Sciences

DOI

2022

Genome-Wide Identification and Characterization of Heat Shock Protein 20 Genes in Maize

Huanhuan Qi, Xiaoke Chen, Sen Luo, Hongzeng Fan, Jinghua Guo, Xuehai Zhang, Yinggen Ke, Pingfang Yang, Feng Yu

Life

DOI

2021

Biased allelic expression in tissues of F1 hybrids between tropical and temperate lotus (Nelumbo nuicfera)

Zhiyan Gao, Hui Li, Xingyu Yang, Pingfang Yang, Jin-Ming Chen, Tao Shi

Plant Molecular Biology

DOI

2021

The lotus NnFTIP1 and NnFT1 regulate flowering time in Arabidopsis.

Liang Zhang, Fan Zhang, Fangbing Liu, Jun Shen, Jiaxuan Wang, Meng Jiang, Dasheng Zhang, Pingfang Yang, Ying Chen, Shiyong Song

Plant Science

DOI

2021

Advances on Post-translational Modifications Involved in Seed Germination

Feng Yu, Ming Li, Dongli He, Pingfang Yang

Frontiers in Plant Science

DOI

2021

Comparative transcriptomic analysis provides insight into carpel petaloidy in lotus (Nelumbo nucifera)

Zhongyuan Lin, Dingding Cao, R. Damaris, Pingfang Yang

PeerJ

DOI

2021

Genome-wide analysis of AP2/ERF superfamily in lotus (Nelumbo nucifera) and the association between NnADAP and rhizome morphology

Dingding Cao, Zhongyuan Lin, Longyu Huang, R. Damaris, Pingfang Yang

BMC Genomics

DOI

2021

Protein Phosphorylation Response to Abiotic Stress in Plants.

R. Damaris, Pingfang Yang

Methods in molecular biology

DOI

2021

Genetic dissection of rhizome yield-related traits in Nelumbo nucifera through genetic linkage map construction and QTL mapping.

Longyu Huang, Ming Li, Dingding Cao, Pingfang Yang

Plant physiology and biochemistry : PPB

DOI

2021

Characterization of key genes involved in anthocyanins biosynthesis in Nelumbo nucifera through RNA-Seq

Jiao Deng, Juan-Juan Li, Meng-Yue Su, Lei Chen, Pingfang Yang

DOI

2021

A CONSTANS-LIKE gene of Nelumbo nucifera could promote potato tuberization

Dingding Cao, Zhongyuan Lin, Longyu Huang, R. Damaris, Ming Li, Pingfang Yang

Planta

DOI

2021

Metabolomics Analyses of Cotyledon and Plumule Showing the Potential Domestic Selection in Lotus Breeding

Huan-Huan Qi, Feng Yu, R. Damaris, Pingfang Yang

Molecules

DOI

2020

Genome-wide identification of MADS-box gene family in sacred lotus (Nelumbo nucifera) identifies a SEPALLATA homolog gene involved in floral development

Zhongyuan Lin, Dingding Cao, R. Damaris, Pingfang Yang

BMC Plant Biology

DOI

2020

Mechanism of GA-mediated leaf sheath growth in rice: a proteomic approach

Zhengrong Hu, R. Damaris, Pingfang Yang

Plant growth regulation (Print)

DOI

2020

A bHLH gene NnTT8 of Nelumbo nucifera regulates anthocyanin biosynthesis.

Jiao Deng, Juan-Juan Li, Meng-Yu Su, Zhongyuan Lin, Lei Chen, Pingfang Yang

Plant physiology and biochemistry : PPB

DOI

2020

Advances on Plant Ubiquitylome—From Mechanism to Application

Dongli He, R. Damaris, Ming Li, I. Khan, Pingfang Yang

International Journal of Molecular Sciences

DOI

2020

Plant Protein and Proteome Altlas--Integrated Omics Analyses of Plants under Abiotic Stresses

Ling Li, Xuchu Wang, Shaojun Dai, Pingfang Yang, Ting-Yun Kuang, X. Qin

DOI

2020

Mutations on ent-kaurene oxidase 1 encoding gene attenuate its enzyme activity of catalyzing the reaction from ent-kaurene to ent-kaurenoic acid and lead to delayed germination in rice

Hui Zhang, Ming Li, Dongli He, Kun Wang, Pingfang Yang

PLoS Genetics

DOI

2020

Proteomic analysis reveals that calcium channel blockers affect radicle protrusion during rice seed germination

Ming Li, Xi Chen, Dongli He, Pingfang Yang

DOI

2020

Integrated Omics Analyses Identify Key Pathways Involved in Petiole Rigidity Formation in Sacred Lotus

Ming Li, Ishfaq Hameed, Dingding Cao, Dongli He, Pingfang Yang

International Journal of Molecular Sciences

DOI

2019

Proteomics Study in Rice Responses and Tolerance to Salt Stress

Tonny Maraga Nyong’a, Pingfang Yang, Ming Li

Advances in Rice Research for Abiotic Stress Tolerance

DOI

2019

Quantitative Ubiquitylomics Approach for Characterizing the Dynamic Change and Extensive Modulation of Ubiquitylation in Rice Seed Germination.

Dongli He, Ming Li, R. Damaris, Chen Bu, Jianyou Xue, Pingfang Yang

The Plant Journal

DOI

2019

The Latest Studies on Lotus (Nelumbo nucifera)-an Emerging Horticultural Model Plant

Zhongyuan Lin, Cheng Zhang, Dingding Cao, R. Damaris, Pingfang Yang

International Journal of Molecular Sciences

DOI

2019

Genome-Wide DNA Methylation Profiling in the Lotus (Nelumbo nucifera) Flower Showing its Contribution to the Stamen Petaloid

Zhongyuan Lin, Meihui Liu, R. Damaris, Tonny Maraga Nyong’a, Dingding Cao, Ke-Fang Ou, Pingfang Yang

Plants

DOI

2019

The complexity of alternative splicing and landscape of tissue-specific expression in lotus (Nelumbo nucifera) unveiled by Illumina- and single-molecule real-time-based RNA-sequencing

Yue Zhang, Tonny Maraga Nyong’a, Tao Shi, Pingfang Yang

DNA Research

DOI

2019

Proteomic analysis showing the signaling pathways involved in the rhizome enlargement process in Nelumbo nucifera

Dingding Cao, R. Damaris, Yue Zhang, Meihui Liu, Ming Li, Pingfang Yang

BMC Genomics

DOI

2019

The Rice Alpha-Amylase, Conserved Regulator of Seed Maturation and Germination

R. Damaris, Zhongyuan Lin, Pingfang Yang, Dongli He

International Journal of Molecular Sciences

DOI

2018

Evolutionarily conserved function of the sacred lotus (Nelumbo nucifera Gaertn.) CER2-LIKE family in very-long-chain fatty acid elongation

Xian-Peng Yang, Zhou-Ya Wang, Tao Feng, Juan-Juan Li, Longyu Huang, Baiming Yang, Hua-Yan Zhao, M. Jenks, Pingfang Yang, Shi-You Lu

Planta

DOI

2018

Systematic transcriptomic analysis provides insights into lotus (Nelumbo nucifera) seed development

Juan-Juan Li, Tao Shi, Longyu Huang, Dongli He, Tonny Maraga Nyong’a, Pingfang Yang

Plant growth regulation (Print)

DOI

2018

Transcriptomic analysis identifies the key genes involved in stamen petaloid in lotus (Nelumbo nucifera)

Zhongyuan Lin, R. Damaris, Tao Shi, Juan-Juan Li, Pingfang Yang

BMC Genomics

DOI

2017

iTRAQ-Based Quantitative Proteomics Analysis on Rice Anther Responding to High Temperature

Qilin Mu, Wen-Ying Zhang, Yun-Bo Zhang, Haoliang Yan, Ke Liu, T. Matsui, Xiao-Hai Tian, Pingfang Yang

International Journal of Molecular Sciences

DOI

2017

Carbonylated protein changes between active germinated embryos and quiescent embryos give insights into rice seed germination regulation

Hui Zhang, Dongli He, Ming Li, Pingfang Yang

Plant growth regulation (Print)

DOI

2017

The evolution of plant microRNAs: insights from a basal eudicot sacred lotus

Tao Shi, Kun Wang, Pingfang Yang

The Plant Journal

DOI

2016

Genome-Wide Analysis of the R2R3 MYB Subfamily Genes in Lotus (Nelumbo nucifera)

Jiao Deng, Ming Li, Longyu Huang, Mei Yang, Pingfang Yang

Plant Molecular Biology Reporter

DOI

2016

Metabolomic and Proteomic Profiles Reveal the Dynamics of Primary Metabolism during Seed Development of Lotus (Nelumbo nucifera)

Lei Wang, J. Fu, Ming Li, Lena Fragner, W. Weckwerth, Pingfang Yang

Frontiers in Plant Science

DOI

2016

Analysis of dynamic protein carbonylation in rice embryo during germination through AP‐SWATH

Hui Zhang, Dongli He, Jianlan Yu, Ming Li, R. Damaris, Ravi Gupta, Sun Tae Kim, Pingfang Yang

Proteomics

DOI

2016

A proteomic analysis of salt stress response in seedlings of two African rice cultivars.

R. Damaris, Ming Li, Yan-Li Liu, Xi Chen, H. Murage, Pingfang Yang

Biochimica et Biophysica Acta

DOI

2016

Two Dimensional Gel Electrophoresis-Based Plant Phosphoproteomics.

Chao Han, Pingfang Yang

Methods in molecular biology

DOI

2016

Exploration of rice pistil responses during early post-pollination through a combined proteomic and transcriptomic analysis.

Ming Li, Kun Wang, Shaoqing Li, Pingfang Yang

Journal of Proteomics

DOI

2016

Global Proteome Analyses of Lysine Acetylation and Succinylation Reveal the Widespread Involvement of both Modification in Metabolism in the Embryo of Germinating Rice Seed.

Dongli He, Qiong Wang, Ming Li, R. Damaris, Xingling Yi, Zhong-Yi Cheng, Pingfang Yang

Journal of Proteome Research

DOI

2016

Ancient microRNA families that regulate transcription factors are preferentially preserved during plant radiation

Tao Shi, Kun Wang, Pingfang Yang

Plant Signalling & Behavior

DOI

2016

Induction and quantitative proteomic analysis of cell dedifferentiation during callus formation of lotus (Nelumbo nucifera Gaertn.spp. baijianlian).

Yan-Li Liu, P. Chaturvedi, J. Fu, Qingqing Cai, W. Weckwerth, Pingfang Yang

Journal of Proteomics

DOI

2015

RNA-Seq Uncovers SNPs and Alternative Splicing Events in Asian Lotus (Nelumbo nucifera)

Mei Yang, Li-Ming Xu, Yan-Ling Liu, Pingfang Yang

PLoS ONE

DOI

2015

Genome-Wide Dissection of the MicroRNA Expression Profile in Rice Embryo during Early Stages of Seed Germination

Dongli He, Qiong Wang, Kun Wang, Pingfang Yang

PLoS ONE

DOI

2015

Proteomics of Important Food Crops in the Asia Oceania Region: Current Status and Future Perspectives.

S. Chakraborty, G. Salekdeh, Pingfang Yang, S. Woo, C. Chin, C. Gehring, P. Haynes, M. Mirzaei, S. Komatsu

Journal of Proteome Research

DOI

2015

Transcriptomic Analysis of the Regulation of Rhizome Formation in Temperate and Tropical Lotus (Nelumbo nucifera)

Mei Yang, Ling-Ping Zhu, C. Pan, Liming Xu, Yanling Liu, W. Ke, Pingfang Yang

Scientific Reports

DOI

2015

Proteomic Analysis of Phosphoproteins in the Rice Nucleus During the Early Stage of Seed Germination.

Ming Li, Xiaojian Yin, K. Sakata, Pingfang Yang, S. Komatsu

Journal of Proteome Research

DOI

2015

LOTUS-DB: an integrative and interactive database for Nelumbo nucifera study

Kun Wang, Jiao Deng, R. Damaris, Mei Yang, Li-Ming Xu, Pingfang Yang

Database J. Biol. Databases Curation

DOI

2015

Phosphoproteomics in cereals.

Pingfang Yang

Methods in molecular biology

DOI

2015

Studies on the molecular mechanisms of seed germination

Chao Han, Pingfang Yang

Proteomics

DOI

2015

Proteomic and Epigenetic Analyses of Lotus (Nelumbo nucifera) Petals Between Red and White cultivars.

Jiao Deng, Ziyang Fu, Sha Chen, R. Damaris, Kun Wang, Ting-Ting Li, Pingfang Yang

Plant and Cell Physiology

DOI

2014

In-depth proteomic analysis of rice embryo reveals its important roles in seed germination.

Chao Han, Dongli He, Ming Li, Pingfang Yang

Plant and Cell Physiology

DOI

2014

Analysis of phosphoproteome in rice pistil

Kun Wang, Yong Zhao, Ming Li, F. Gao, Mingkun Yang, Xin Wang, Shaoqing Li, Pingfang Yang

Proteomics

DOI

2014

The Mitochondrion-Located Protein OsB12D1 Enhances Flooding Tolerance during Seed Germination and Early Seedling Growth in Rice

Dongli He, Hui Zhang, Pingfang Yang

International Journal of Molecular Sciences

DOI

2014

Quantitative proteomics reveals the role of protein phosphorylation in rice embryos during early stages of germination.

Chao Han, Pingfang Yang, K. Sakata, S. Komatsu

Journal of Proteome Research

DOI

2014

Application of Proteomics for Improvement in Crop Protection/Artificial Regulation

S. Komatsu, H. Mock, Pingfang Yang, B. Svensson

DOI

2013

Comparative Proteomic Analysis of Rice Shoots Exposed to High Arsenate

Yanli Liu, Ming Li, Chao Han, Fengxia Wu, Bingkun Tu, Pingfang Yang

Journal of Integrative Plant Biology

精选作品

期刊论文

The OsNTL3 ‐ WRKY53 ‐ CatA module confers thermotolerance in rice

Rhizosphere Microbiome‐Mediated Drought Resilience in Cereals: Implications for Grain Nutrition, Yield, and Tolerance

Identification of OsCsLF6 Gene Responsible for Rice Seed Submergence Germination Through Genome‐Wide Association Analysis

Genome-Wide Characterization and Expression Analysis of Heat Shock Transcription Factors in Two Cultivars of Rice (Oryza sativa L.) Under Heat Stress

Proteomic decoding of maize responses to microplastics and copper stress under iron oxide nanoparticles

Molecular Insights into Zinc Uptake and Accumulation in Wheat (Triticum aestivum L.): From Deficiency Responses to Biofortification Strategies

FeONPs-mediated alleviation of salt stress in rice through ROS scavenging and metal homeostasis

Recent Advances and Application of Machine Learning for Protein–Protein Interaction Prediction in Rice: Challenges and Future Perspectives

Study on Rice Submergence Germination Through the Combination of RNA-Seq and Genome Resequencing Strategies

An MYB114-like transcription factor in Nelumbo nucifera could positively regulate anthocyanin accumulation together with NnTT8

Abiotic and Biotic Stress of the Crops and Horticultural Plants

Research progress of peptides discovery and function in resistance to abiotic stress in plant

Identification of Proteoforms Related to Nelumbo nucifera Flower Petaloid Through Proteogenomic Strategy

Deciphering the core shunt mechanism in Arabidopsis cuticular wax biosynthesis and its role in plant environmental adaptation

Mechanistic insights into hybrid rice Liangyou 287's superior performance: transcriptomic and metabolic evidence for rapid starch biosynthesis during grain filling

Plant secondary metabolites-mediated plant defense against bacteria and fungi pathogens

SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 13 (SPL13) together with SPL9 redundantly regulates wax biosynthesis under drought stress

Molecular mechanisms of rice seed germination

OsMBF1a Facilitates Seed Germination by Regulating Biosynthesis of Gibberellic Acid and Abscisic Acid in Rice

An AP2/ERF transcription factor confers chilling tolerance in rice

DNA Methylation Dynamics in Response to Drought Stress in Crops

Proteomics profiling reveals the detoxification and tolerance behavior of two bread wheat (Triticum aestivum L.) varieties under arsenate stress

The Arabidopsis cytochrome P450 enzyme CYP96A4 is involved in the wound‐induced biosynthesis of cuticular wax and cutin monomers

Salt induced protein dynamics in young rice roots of osmybcc-1 mutant and its involvement in salt stress

Exploring domestication pattern in lotus: insights from dispensable genome assembly

ENHANCED DISEASE SUSCEPTIBILITY 1 promotes hydrogen peroxide scavenging to enhance rice thermotolerance

Identifying RNA Modifications by Direct RNA Sequencing Reveals Complexity of Epitranscriptomic Dynamics in Rice

Evolution and diversification of CaM/CML gene family in green plants.

Regulatory network of rice in response to heat stress and its potential application in breeding strategy

Proteomic and metabolomic analyses showing the differentially accumulation of NnUFGT2 is involved in the petal red-white bicolor pigmentation in lotus (Nelumbo nucifera).

The high-quality genome of lotus reveals tandem duplicate genes involved in stress response and secondary metabolites biosynthesis

Exploring Splicing Variants and Novel Genes in Sacred Lotus Based on RNA-seq Data

Genome-wide Identification and Expression Analysis of CaM/CML Gene Family in Sacred Lotus (Nelumbo nucifera)

A stress-associated protein OsSAP8 modulates gibberellic acid biosynthesis by reducing the promotive effect of transcription factor OsbZIP58 on OsKO2.

Editorial: Proteomics of Post-translational Modifications in Plants

TMT-based quantitative proteomic and physiological analyses on lotus plumule of artificially aged seed in long-living sacred lotus Nelumbo nucifera.

Integration of metabolomics and transcriptomics analyses investigates the accumulation of secondary metabolites in maturing seed plumule of sacred lotus (Nelumbo nucifera).

Studies on Lotus Genomics and the Contribution to Its Breeding

Genome-Wide Identification and Characterization of Heat Shock Protein 20 Genes in Maize

Biased allelic expression in tissues of F1 hybrids between tropical and temperate lotus (Nelumbo nuicfera)

The lotus NnFTIP1 and NnFT1 regulate flowering time in Arabidopsis.

Advances on Post-translational Modifications Involved in Seed Germination

Comparative transcriptomic analysis provides insight into carpel petaloidy in lotus (Nelumbo nucifera)

Genome-wide analysis of AP2/ERF superfamily in lotus (Nelumbo nucifera) and the association between NnADAP and rhizome morphology

Protein Phosphorylation Response to Abiotic Stress in Plants.

Genetic dissection of rhizome yield-related traits in Nelumbo nucifera through genetic linkage map construction and QTL mapping.

Characterization of key genes involved in anthocyanins biosynthesis in Nelumbo nucifera through RNA-Seq

A CONSTANS-LIKE gene of Nelumbo nucifera could promote potato tuberization

Metabolomics Analyses of Cotyledon and Plumule Showing the Potential Domestic Selection in Lotus Breeding

Genome-wide identification of MADS-box gene family in sacred lotus (Nelumbo nucifera) identifies a SEPALLATA homolog gene involved in floral development

Mechanism of GA-mediated leaf sheath growth in rice: a proteomic approach

A bHLH gene NnTT8 of Nelumbo nucifera regulates anthocyanin biosynthesis.

Advances on Plant Ubiquitylome—From Mechanism to Application

Plant Protein and Proteome Altlas--Integrated Omics Analyses of Plants under Abiotic Stresses

Mutations on ent-kaurene oxidase 1 encoding gene attenuate its enzyme activity of catalyzing the reaction from ent-kaurene to ent-kaurenoic acid and lead to delayed germination in rice

Proteomic analysis reveals that calcium channel blockers affect radicle protrusion during rice seed germination

Integrated Omics Analyses Identify Key Pathways Involved in Petiole Rigidity Formation in Sacred Lotus

Proteomics Study in Rice Responses and Tolerance to Salt Stress

Quantitative Ubiquitylomics Approach for Characterizing the Dynamic Change and Extensive Modulation of Ubiquitylation in Rice Seed Germination.

The Latest Studies on Lotus (Nelumbo nucifera)-an Emerging Horticultural Model Plant

Genome-Wide DNA Methylation Profiling in the Lotus (Nelumbo nucifera) Flower Showing its Contribution to the Stamen Petaloid

The complexity of alternative splicing and landscape of tissue-specific expression in lotus (Nelumbo nucifera) unveiled by Illumina- and single-molecule real-time-based RNA-sequencing

Proteomic analysis showing the signaling pathways involved in the rhizome enlargement process in Nelumbo nucifera

The Rice Alpha-Amylase, Conserved Regulator of Seed Maturation and Germination

Evolutionarily conserved function of the sacred lotus (Nelumbo nucifera Gaertn.) CER2-LIKE family in very-long-chain fatty acid elongation

Systematic transcriptomic analysis provides insights into lotus (Nelumbo nucifera) seed development

Transcriptomic analysis identifies the key genes involved in stamen petaloid in lotus (Nelumbo nucifera)

iTRAQ-Based Quantitative Proteomics Analysis on Rice Anther Responding to High Temperature

Carbonylated protein changes between active germinated embryos and quiescent embryos give insights into rice seed germination regulation

The evolution of plant microRNAs: insights from a basal eudicot sacred lotus

Genome-Wide Analysis of the R2R3 MYB Subfamily Genes in Lotus (Nelumbo nucifera)

Metabolomic and Proteomic Profiles Reveal the Dynamics of Primary Metabolism during Seed Development of Lotus (Nelumbo nucifera)

Analysis of dynamic protein carbonylation in rice embryo during germination through AP‐SWATH

A proteomic analysis of salt stress response in seedlings of two African rice cultivars.

Two Dimensional Gel Electrophoresis-Based Plant Phosphoproteomics.

Exploration of rice pistil responses during early post-pollination through a combined proteomic and transcriptomic analysis.

Global Proteome Analyses of Lysine Acetylation and Succinylation Reveal the Widespread Involvement of both Modification in Metabolism in the Embryo of Germinating Rice Seed.

Ancient microRNA families that regulate transcription factors are preferentially preserved during plant radiation