百晓学者学者目录

廖奇

副教授、教授、研究员、讲师，宁波大学

精选作品

期刊论文

2026

增强子RNA:转录调控的多维机制及其在癌症中作用

陶跃柱，俞秀冲，廖奇

《中国生物化学与分子生物学报》

2026

增强子RNA的机制、表观遗传修饰以及在癌症中的功能作用

黄春辉，李艳国，邱美倩，廖奇

《中国细胞生物学学报》

2026

Emerging insights into enhancer RNAs: biogenesis, function, mechanism, and disease implication

Meiqian Qiu, Xiu-Chong Yu, He-Ting Liu, Y. Tao, Chun-Hui Huang, Yang Xi, Qi Liao

Briefings in Bioinformatics

DOI

2026

Gemcitabine enhanced the sensitivity of colorectal cancer to anti-PD-L1 therapy by promoting lactylation.

J. Gong, Chengjiang Fan, Jia-Ning Chen, Shu-Hui Xu, Hai-Zhong Jiang, Desen Sun, Qiang Chen, Qi Liao, Yang Xi

International Immunopharmacology

DOI

2025

结直肠癌患者血清外泌体miR-122、miR-874的表达及其临床意义

龚香，文庆莲，陈文凡，廖奇，李丽

《现代生物医学进展》

2025

Enhancer RNA Transcriptome‐Wide Association Study Reveals a Distinctive Class of Pan‐Cancer Susceptibility eRNAs

Wenyan Chen, Zeyang Wang, Yinuo Wang, Jianxiang Lin, Shuxin Chen, Hui Chen, Xuelian Ma, Xudong Zou, Xing Li, Yangmei Qin, Kewei Xiong, Xixian Ma, Qi Liao, Yunbo Qiao, Lei Li

Advanced Science

DOI

2025

Identification and multi-omics analysis of essential coding and long non-coding genes in colorectal cancer

Yan-Guo Li, Zi-Xing Meng, Chengjiang Fan, Hao Rong, Yang Xi, Qi Liao

Biochemistry and Biophysics Reports

DOI

2025

Ferroptosis related genes in retinopathy of prematurity: Screening for potential pharmacological targets

Qi Liao, Su-Yu Liu, Liqing Wei, Yuli Cai, Ying Li

Molecular Vision

DOI

2024

增强子RNA的功能特性及其在人类疾病中的重要调控作用

栗星，孟子行，骆奇能，廖奇

《中国细胞生物学学报》

2024

scRNA-seq与scATAC-seq数据整合分析方法及其在生物医学中的应用

孟子行，李艳国，戎浩，廖奇

《中国细胞生物学学报》

2024

HMGA2 alleviates ferroptosis by promoting GPX4 expression in pancreatic cancer cells

Ziyang Luo, Qingfang Zheng, Shazhou Ye, Yanguo Li, Jiayi Chen, Chengjiang Fan, Jianing Chen, Yuxin Lei, Qi Liao, Xi Yang

Cell Death and Disease

DOI

2024

Characterization of Cancer Stem Cells in Laryngeal Squamous Cell Carcinoma by Single-cell RNA Sequencing

Yan-Guo Li, Chen Lin, Yi-Dian Chu, Zhengyu Wei, Qi Ding, Shanshan Gu, Hong-Xia Deng, Qi Liao, Zhi-Sen Shen

bioRxiv

DOI

2023

Identification of hypoxia‐related gene signatures based on multi‐omics analysis in lung adenocarcinoma

Qineng Luo, Xing Li, Zixing Meng, Hao Rong, Yanguo Li, Guofang Zhao, Huangkai Zhu, Lvjun Cen, Qi Liao

Journal of Cellular and Molecular Medicine

DOI

2023

Prediction of miRNA-disease associations in microbes based on graph convolutional networks and autoencoders

Qi Liao, Yuxiang Ye, Zi-Hang Li, Hao Chen, Linlin Zhuo

Frontiers in Microbiology

DOI

2023

Comprehensive landscape of resistance mechanisms for neoadjuvant therapy in esophageal squamous cell carcinoma by single-cell transcriptomics

Yu-Shang Yang, Yan-Guo Li, Hao-Peng Yu, Z. Ding, Long-Qi Chen, Xiaoxi Zeng, Shun-Min He, Qi Liao, Yi Zhao, Yong Yuan

Signal Transduction and Targeted Therapy

DOI

2022

长链非编码RNA在肿瘤免疫微环境中的作用

胡诗芸，奕天飞，王家立，廖奇，叶孟

《生命科学》

2022

tRNA衍生片段的鉴定及对靶分子的调节机制

黄炯杰，陈乐意，廖奇

《中国生物化学与分子生物学报》

2022

Factors Influencing Postoperative Prognosis in Patients with Hypopharyngeal and Laryngeal Carcinoma

Jingjing Chen, Nanxue Liang, Chao Sun, Lu-Yi Zhang, Tianfei Yi, Qi Liao, Shui-Hong Zhou

Ear, nose, & throat journal

DOI

2022

Single-cell discovery of the scene and potential immunotherapeutic target in hypopharyngeal tumor environment

Chen Lin, Yan-Guo Li, Yi-Dian Chu, Yaqin Lu, Zheng-Yu Wei, Hong-Xia Deng, Shanshan Gu, Qi Ding, Zhi-Sen Shen, Qi Liao

Cancer Gene Therapy

DOI

2021

RNA结合蛋白与非编码RNA调节关系的研究进展

倪舒静，徐美倩，陈辰，王玲琳，朱婷琰，奕天飞，吉米丽古丽·艾尼，廖奇

《中国细胞生物学学报》

2021

左右半结肠癌多组学分子特征差异的研究进展

奕天飞，胡诗芸，宓佳莹，倪舒静，陈辰，陈乐意，廖奇

《中国细胞生物学学报》

2021

转录因子在肝癌中调节作用的研究进展

陈辰，奕天飞，倪舒静，王玲琳，朱婷琰，徐美倩，吉米丽古丽·艾尼，廖奇

《生命科学研究》

2021

ncFANs v2.0: an integrative platform for functional annotation of non-coding RNAs

Yuwei Zhang, Dechao Bu, Peipei Huo, Zhihao Wang, Hao Rong, Yanguo Li, Jingjia Liu, Meng Ye, Yang Wu, Zheng Jiang, Qi Liao, Yi Chen Zhao

Nucleic Acids Research

DOI

2021

Prognostic signatures and potential pathogenesis of eRNAs‐related genes in colon adenocarcinoma

Hao Rong, Yanguo Li, Shiyun Hu, Liuying Gao, Tianfei Yi, Yangyang Xie, Ping Cai, Jianjiong Li, Xiaoyu Dai, Meng Ye, Qi Liao

Molecular Carcinogenesis

DOI

2021

Regulatory Network Analysis of Mutated Genes Based on Multi-Omics Data Reveals the Exclusive Features in Tumor Immune Microenvironment Between Left-Sided and Right-Sided Colon Cancer

Tianfei Yi, Yuwei Zhang, Derry Minyao Ng, Xi Yang, Meng Ye, Lvjun Cen, Jianjiong Li, Xiaoxiang Fan, Yanguo Li, Shiyun Hu, Hao Rong, Yangyang Xie, Guofang Zhao, Leyi Chen, Chen Chen, Shujing Ni, Jiaying Mi, Xiaoyu Dai, Qi Liao

Frontiers in Oncology

DOI

2021

Cytoglobin promotes sensitivity to ferroptosis by regulating p53‐YAP1 axis in colon cancer cells

Shazhou Ye, Mingjun Xu, Tingwei Zhu, Jiayi Chen, Shanping Shi, Haizhong Jiang, Qingfang Zheng, Qi Liao, Xiaoyun Ding, Xi Yang

Journal of Cellular and Molecular Medicine

DOI

2020

In silico Method in CRISPR/Cas System: An Expedite and Powerful Booster

Yuwei Zhang, Guofang Zhao, Fatma Yislam Hadi Ahmed, Tianfei Yi, Shiyun Hu, Ting Cai, Qi Liao

Frontiers in Oncology

DOI

2020

Multi-omics Data Analyses Construct TME and Identify the Immune-Related Prognosis Signatures in Human LUAD

Yuwei Zhang, Minglei Yang, Derry Minyao Ng, Maria Haleem, Tianfei Yi, Shiyun Hu, Huangkai Zhu, Guofang Zhao, Qi Liao

Molecular Therapy — Nucleic Acids

DOI

2020

Function and regulation annotation of up‐regulated long non‐coding RNA LINC01234 in gastric cancer

Yinyin Zhu, Cong Luo, Korakkandan Arshad Ali, Yislam Hadi Ahmed Fatma, Tao Yang, Tianfei Yi, Shiyun Hu, Qi Liao

Journal of Clinical Laboratory Analysis

DOI

2020

Network analysis of KLF5 targets showing the potential oncogenic role of SNHG12 in colorectal cancer

Qi Liao, Lin-Bo Chen, Ning Zhang, Y. Xi, Shiyun Hu, D. Ng, F. Y. Ahmed, Guo-Fang Zhao, Xiaoxiang Fan, Yangyang Xie, Xiaoyun Dai, Yan-Ping Jin, Jiaxin Ge, C. Dong, Xin-Jun Zhang, Junming Guo

Cancer Cell International

DOI

2019

Expression profiles of circular RNAs in human colorectal cancer based on RNA deep sequencing

Jiaxin Ge, Yanping Jin, Xueyou Lv, Qi Liao, Cong Luo, Guoliang Ye, Xinjun Zhang

Journal of Clinical Laboratory Analysis

DOI

2019

Progress on Virulence and Gene Promotion Regulated by lncRNAs of Plasmodium Falciparum

Jun-Jin Jie, Jianfa Liu, Danni Liu, Qi Liao, Jia Chen, Wen-Wen Jiang

2019

Designing a general method for predicting the regulatory relationships between long noncoding RNAs and protein-coding genes based on multi-omics characteristics

Yuwei Zhang, Tianfei Yi, Huihui Ji, Guo-Fang Zhao, Y. Xi, C. Dong, Li-Na Zhang, Xiaohong Zhang, Jinshun Zhao, Qi Liao

Bioinform.

DOI

2019

Genome-wide identification of the essential protein-coding genes and long non-coding RNAs for human pan-cancer

Yuwei Zhang, Yang Tao, Huihui Ji, Wei Li, Xing-Li Guo, D. Ng, M. Haleem, Y. Xi, C. Dong, Jinshun Zhao, Li-Na Zhang, Xiaohong Zhang, Yangyang Xie, Xiaoyun Dai, Qi Liao

Bioinform.

DOI

2019

Versatile interactions and bioinformatics analysis of noncoding RNAs

Qi Chen, Xian-Wen Meng, Qi Liao, Ming Chen

Briefings Bioinform.

DOI

2019

A Two-DNA Methylation Signature to Improve Prognosis Prediction of Clear Cell Renal Cell Carcinoma

Shanping Shi, Shazhou Ye, Xiaoyue Wu, Mingjun Xu, Renjie Zhuo, Qi Liao, Y. Xi

Yonsei medical journal

DOI

2018

The regulatory network analysis of long noncoding RNAs in human colorectal cancer

Yuwei Zhang, Yang Tao, Yang Li, Jinshun Zhao, Li-Na Zhang, Xiaohong Zhang, C. Dong, Yangyang Xie, Xiaoyun Dai, Xin-Jun Zhang, Qi Liao

Functional & Integrative Genomics

DOI

2018

Identification and functional annotation of metabolism‐associated lnc RNA s and their related protein‐coding genes in gastric cancer

Xiaoyan Mo, Tianwen Li, Yi Xie, Linwen Zhu, Bingxiu Xiao, Qi Liao, Junming Guo

Molecular Genetics & Genomic Medicine

DOI

2018

Regulatory network analysis of high expressed long non-coding RNA LINC00941 in gastric cancer.

C. Luo, Yang Tao, Yuwei Zhang, Yinyin Zhu, Derry Ng Minyao, M. Haleem, C. Dong, Li-Na Zhang, Xiaohong Zhang, Jinshun Zhao, Qi Liao

Gene

DOI

2018

Long non-coding RNA biomarker for human laryngeal squamous cell carcinoma prognosis.

Jingjing Chen, Zhi-Sen Shen, Hong-Xia Deng, Wei Zhou, Qi Liao, Ying Mu

Gene

DOI

2018

Regulatory network analysis of LINC00472, a long noncoding RNA downregulated by DNA hypermethylation in colorectal cancer

L. Chen, W. Zhang, D.-Y. Li, Xiao-Long Wang, Yang Tao, Yuwei Zhang, C. Dong, Jin-Shun Zhao, Li-Na Zhang, Xiaohong Zhang, Junming Guo, Qi Liao

Clinical Genetics

DOI

2018

Long noncoding RNA: a crosslink in biological regulatory network

Yuwei Zhang, Yang Tao, Qi Liao

Briefings Bioinform.

DOI

2018

Identification of long noncoding RNAs in Schistosoma mansoni and Schistosoma japonicum.

Qi Liao, Yuwei Zhang, Yuchao Zhu, Jia Chen, C. Dong, Yang Tao, Ai He, Jianfa Liu, Zhongdao Wu

Experimental parasitology

DOI

2016

机器学习方法在基因功能注释中的应用

李金城，廖奇，沈其君

《中国生物化学与分子生物学报》

2016

CRISPR相关的生物信息学基础

陶洋，李金城，廖奇

《中国生物化学与分子生物学报》

2016

Comprehensive analysis of epigenetic pattern of long noncoding RNA loci in colorectal cancer.

Qi Liao, Lin-Bo Chen, Jianfa Liu, Tao Yang, Jincheng Li, Xiaohong Zhang, Jinshun Zhao

Gene

DOI

2015

lncRNAs功能注释和预测

余铖亮，骆亮，廖奇

《中国生物化学与分子生物学报》

2015

鉴定和预测长非编码RNAs的生物信息学方法

陈思佟，岑益，柳建发，李洋，廖奇

《生命科学》

2015

Identification and functional annotation of lncRNA genes with hypermethylation in colorectal cancer.

Qi Liao, Weiling He, Jianfa Liu, Yixuan Cen, Liang Luo, Chengli Yu, Yang Li, Si-Tong Chen, S. Duan

Gene

DOI

2014

长非编码RNAs在表观遗传上的作用

潘广慧，高涛，郑启，廖奇

《生物物理学报》

2014

DNA methylation patterns of protein coding genes and long noncoding RNAs in female schizophrenic patients

Qi Liao, Yunliang Wang, Jia Rong Cheng, Dongjun Dai, Xingyu Zhou, Yuzheng Zhang, Shugui Gao, Shiwei Duan

European Journal of Medical Genetics

DOI

2014

GCKGene-Body Hypomethylation Is Associated with the Risk of Coronary Heart Disease

Limin Xu, Dawei Zheng, Lingyan Wang, Danjie Jiang, Haibo Liu, Leiting Xu, Qi Liao, Lina Zhang, Panpan Liu, Xinbao Shi, Zhaoyang Wang, Lebo Sun, Qingyun Zhou, Ni Li, Yi Huang, Yanping Le, Meng Ye, Guofeng Shao, Shiwei Duan

BioMed Research International

DOI

2014

Long noncoding RNA associated-competing endogenous RNAs in gastric cancer

T. Xia, Qi Liao, Xiao-Ming Jiang, Y. Shao, Bing-Xiu Xiao, Y. Xi, Junming Guo

Scientific Reports

DOI

2014

Genome-wide identification and functional annotation of Plasmodium falciparum long noncoding RNAs from RNA-seq data

Qi Liao, Jia Shen, Jianfa Liu, Xi Sun, Guoguang Zhao, Ya-Tzu Chang, Lei-Ting Xu, Xue-Rong Li, Ya Zhao, Huan-Qin Zheng, Yi Zhao, Zhongdao Wu

Parasitology Research

DOI

2013

大肠癌的表观遗传学研究进展

陈成，叶孟，段世伟，廖奇

《中国细胞生物学学报》

2013

Meta-Analyses of 8 Polymorphisms Associated with the Risk of the Alzheimer’s Disease

Xuting Xu, Yunliang Wang, Lingyan Wang, Qi Liao, Lan Yi Chang, Leiting Xu, Yi Huang, Huadan Ye, Limin Xu, Cheng Chen, Xiaowei Shen, Fuqiang Zhang, Meng Ye, Qinwen Wang, Shiwei Duan

PLoS ONE

DOI

2013

Elevated PLA2G7 Gene Promoter Methylation as a Gender-Specific Marker of Aging Increases the Risk of Coronary Heart Disease in Females

Danjie Jiang, Dawei Zheng, Lingyan Wang, Yi Huang, Haibo Liu, Leiting Xu, Qi Liao, Panpan Liu, Xinbao Shi, Zhaoyang Wang, Lebo Sun, Qingyun Zhou, Ni Li, Limin Xu, Yanping Le, Meng Ye, Guofeng Shao, Shiwei Duan

PLoS ONE

DOI

2013

Systematic study of human long intergenic non-coding RNAs and their impact on cancer

Liang Dan Sun, Haitao Luo, Qi Liao, Dechao Bu, Guoguang Zhao, ChangNing Liu, YuanNing Liu, Yi Chen Zhao

Science China Life Sciences

DOI

2013

Genome-wide identification of cancer-related polyadenylated and non-polyadenylated RNAs in human breast and lung cell lines

Guoguang Zhao, F. Jiao, Qi Liao, Hai-Tao Luo, Hui Li, Liang Sun, D. Bu, Kuntao Yu, Yi Zhao, Run-Sheng Chen

Science China Life Sciences

DOI

2012

Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks

Xingli Guo, Lin Gao, Qi Liao, Hui Xiao, Xiaoke Ma, Xiaofei Yang, Haitao Luo, Guoguang Zhao, Dechao Bu, Fei Jiao, Qixiang Shao, Runsheng Chen, Yi Chen Zhao

Nucleic Acids Research

DOI

2011

Large-scale prediction of long non-coding RNA functions in a coding–non-coding gene co-expression network

Qi Liao, Chang-Ning Liu, Xiongying Yuan, Shuli Kang, Ruoyu Miao, Hui Xiao, Guoguang Zhao, Hai-Tao Luo, D. Bu, Hai-Tao Zhao, G. Skogerbø, Zhongdao Wu, Yi Zhao

Nucleic Acids Research

DOI

2011

ncFANs: a web server for functional annotation of long non-coding RNAs

Qi Liao, Hui Xiao, D. Bu, Chao Xie, Ruoyu Miao, Hai-Tao Luo, Guoguang Zhao, Kuntao Yu, Hai-Tao Zhao, G. Skogerbø, Run-Sheng Chen, Zhongdao Wu, Chang-Ning Liu, Yi Zhao

Nucleic Acids Res.

DOI

2011

NONCODE v3.0: integrative annotation of long noncoding RNAs

D. Bu, Kuntao Yu, Si-Long Sun, Chao Xie, G. Skogerbø, Ruoyu Miao, Hui Xiao, Qi Liao, Hai-Tao Luo, Guoguang Zhao, Hai-Tao Zhao, Zhiyong Liu, Chang-Ning Liu, Run-Sheng Chen, Yi Zhao

Nucleic Acids Res.

DOI

2011

Identifying Schistosoma japonicum Excretory/Secretory Proteins and Their Interactions with Host Immune System

Qi Liao, Xiongying Yuan, Hui Xiao, Chang-Ning Liu, Zhi-Yue Lv, Yi Zhao, Zhongdao Wu

PLoS ONE

DOI

2009

Clustered microRNAs' coordination in regulating protein-protein interaction network

Xiongying Yuan, Chang-Ning Liu, Peng-Cheng Yang, Shunmin He, Qi Liao, Shuli Kang, Yi Zhao

BMC Systems Biology

DOI

会议论文

2020

单细胞转录组测序分析喉癌及转移癌细胞的异质性

沈志森，顾姗姗，邓红霞，廖奇，李艳国

《2020年浙江省医学会耳鼻咽喉头颈外科学学术大会论文汇编》

DOI

2019

基于多组学特征对蛋白编码基因和长非编码RNA调节关系的预测

廖奇，张育炜，奕天飞

《2019中国化学会第十五届全国计算（机）化学学术会议论文集》

DOI

2011

利用二代测序数据挖掘恶性疟原虫的长非编码RNA的研究

廖奇，孙希，李学荣，吴忠道

《2011年全国寄生虫学与热带医学学术研讨会》

预印本

2026

Hierarchical refinements of cis-regulatory inputs improve scalable gene expression prediction

Qinhu Zhang, Meng Xing, Qi Liao, Z Li, De-Shuang Huang

bioRxiv (Cold Spring Harbor Laboratory)

DOI

2019

Comprehensive Characterization of the Interplay between Alternative Splicing and RNA Binding Proteins in Hepatocellular Carcinoma

Qili Shi, Qinya Zhang, Zi Xiong, Libing Shen, Qi Liao, Jing Chie Lin, Shiyu Guo, Ting Cai, Shun Zhang

SSRN Electronic Journal

DOI

2018

Comprehensive Analysis and Prediction of the Essential Genes in Human Cancer Cells

Yuwei Zhang, Tao Yang, Huihui Ji, Wei Li, Xingli Guo, Changzheng Dong, Jinshun Zhao, Lina Zhang, Xiaohong Zhang, Yangyang Xie, Xiaoyu Dai, Qi Liao

SSRN Electronic Journal

DOI

书籍章节

2017

Identification and Functional Annotation of LncRNAs in Human Disease

Qi Liao, Dechao Bu, Liang Dan Sun, Haitao Luo, Yi Chen Zhao

Health information science

DOI

研究方向

生物信息学

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