百晓学者学者目录

宋晓元

副教授、博士生导师、教授、研究员，中国科学技术大学

精选作品

期刊论文

2026

Chromatin end–anchored chromosome-sized domains and promoter loops organize a transcriptionally active genome in Tetrahymena

Tengfei Hu, Xiaoyuan Song, Zhengyu Luo

Proceedings of the National Academy of Sciences

DOI

2026

The pachytene-specific lncRNA 1700008K24Rik is essential for mouse spermatogenesis and functions as a conserved piRNA precursor

Shikun Jian, Xu Han, Chenyao Xie, Yinghao Ma, Peize Chen, Weiguang Liu, Jun Xiao, Xiaoyuan Song

Non-coding RNA Research

DOI

2025

DNA methylation landscape of Nautilus Pompilius

Yueming Wu, Fan Mao, Xin Dang, Zhi Zhang, Ziniu Yu, Huawei Mu, Yang Zhang, Xiaoyuan Song

BMC Genomics

DOI

2025

Corrigendum to “piR-36249 and DHX36 together inhibit testicular cancer cells progression by upregulating OAS2” [Noncoding RNA Research 2023 8 (2) 174–186]

Qianqian Wang, Peize Chen, Xiaorong Wang, Yueming Wu, Kaiguo Xia, Xiangyu Mu, Qiang Xuan, Jun Xiao, Yaohui He, Wenwen Liu, Xiaoyuan Song, Fei Sun

Non-coding RNA Research

DOI

2023

Response to the letter to editor regarding “piR-36249 and DHX36 together inhibit testicular cancer cells progression by upregulating OAS2”

Qianqian Wang, Peize Chen, Xiaorong Wang, Xiaoyuan Song, Fei Sun

Non-coding RNA Research

DOI

2023

The 3D genome and its impacts on human health and disease

Siqi Wang, Zhengyu Luo, Weiguang Liu, Tengfei Hu, Zhongying Zhao, Michael G Rosenfeld, Xiaoyuan Song

Life Medicine

DOI

2023

piR-36249 and DHX36 together inhibit testicular cancer cells progression by upregulating OAS2

Qianqian Wang, Peize Chen, Xiaorong Wang, Yueming Wu, Kaiguo Xia, Xiangyu Mu, Qiang Xuan, Jun Ying Xiao, Yaohui He, Wen Liu, Xiaoyuan Song, Fei Sun

Non-coding RNA Research

DOI

2022

Alternative transcribed 3' isoform of long non-coding RNA Malat1 inhibits mouse retinal oxidative stress

Amr R. Ghanam, Shengwei Ke, Shujuan Wang, Ramy Elgendy, Chenyao Xie, Siqi Wang, Ran Zhang, Min Wei, Weiguang Liu, Jun Cao, Yan Zhang, Zhi Zhang, Tian Xue, Yong Zheng, Xiaoyuan Song

iScience

DOI

2022

LncRNA‐MALAT1 Regulates Cancer Glucose Metabolism in Prostate Cancer via MYBL2/mTOR Axis

Xiangyu Mu, Zhou Shen, Yao Lin, Jun Xiao, Kaiguo Xia, Congyun Xu, Biao Chen, Ronghua Shi, An-Yang Zhu, Xinzhe Sun, Tao Tao, Xiaoyuan Song, Qiang Xuan

Oxidative Medicine and Cellular Longevity

DOI

2022

LncRNA NEAT1-associated aerobic glycolysis blunts tumor immunosurveillance by T cells in prostate cancer

Kai-Guo Xia, Chang-Ming Wang, De-Yun Shen, Xiaoyuan Song, Xiang-Yu Mu, Jia-Wei Zhou, An-Yang Zhu, Qiang Xuan, Tao Tao

Neoplasma

DOI

2022

Corrigendum: NicE-C efficiently reveals open chromatin–associated chromosome interactions at high resolution

Zheng-Yu Luo, Ran Zhang, Tengfei Hu, Yuting Zhu, Yueming Wu, Wenfei Li, Zhi Zhang, Xue-Biao Yao, Hai-Yi Liang, Xiaoyuan Song

Genome Research

DOI

2021

The long noncoding RNA Synage regulates synapse stability and neuronal function in the cerebellum

Fei Wang, Qianqian Wang, Baowei Liu, Lisheng Mei, Sisi Ma, Shujuan Wang, Ruoyu Wang, Yan Zhang, Chaoshi Niu, Zhi‐Qi Xiong, Yong Zheng, Zhi Zhang, Juan Shi, Xiaoyuan Song

Cell Death and Differentiation

DOI

2021

Functional Network of the Long Non-coding RNA Growth Arrest-Specific Transcript 5 and Its Interacting Proteins in Senescence

Siqi Wang, Shengwei Ke, Yueming Wu, Duo Zhang, Baowei Liu, Yaohui He, Wen Liu, Huawei Mu, Xiaoyuan Song

Frontiers in Genetics

DOI

2021

Author Correction: The genome of Nautilus pompilius illuminates eye evolution and biomineralization

Yang Zhang, Fan Mao, Huawei Mu, Minwei Huang, Yongbo Bao, Lili Wang, Nai-Kei Wong, Shu Xiao, He Dai, Zhiming Xiang, Mingli Ma, Yuanyan Xiong, Ziwei Zhang, Lvping Zhang, Xiaoyuan Song, Fan Wang, Xiyu Mu, Jun Li, Haitao Ma, Yuehuan Zhang, Hongkun Zheng, Oleg Simakov, Ziniu Yu

Nature Ecology & Evolution

DOI

2021

LYAR Promotes Colorectal Cancer Progression by Upregulating FSCN1 Expression and Fatty Acid Metabolism

Yupeng Wu, Yu Zhou, Haiying Gao, Yajun Wang, Qingyu Cheng, Shikun Jian, Qi Ding, Wei Gu, Yanxue Yao, Jia Ma, Wenjuan Wu, Yuyun Li, Xuhui Tong, Xiaoyuan Song, Sai Ma

Oxidative Medicine and Cellular Longevity

DOI

2020

Senescence-associated genes and non-coding RNAs function in pancreatic cancer progression

Qingyu Cheng, Xuan Ouyang, Ran Zhang, Lianbang Zhu, Xiaoyuan Song

RNA Biology

DOI

2020

The Sperm Proteome of the Oyster Crassostrea hongkongensis

Huawei Mu, Shengwei Ke, Duo Zhang, Yanjie Zhang, Xiaoyuan Song, Ziniu Yu, Yang Zhang, Jian‐Wen Qiu

PROTEOMICS

DOI

2020

Reorganized 3D Genome Structures Support Transcriptional Regulation in Mouse Spermatogenesis

Zhengyu Luo, Xiaorong Wang, Hong Jiang, Ruoyu Wang, Jian Chen, Yusheng Chen, Qianlan Xu, Jun Cao, Xiaowen Gong, Ji Wu, Yun‐Gui Yang, Wenbo Li, Chunsheng Han, C. Yan Cheng, Michael G. Rosenfeld, Fei Sun, Xiaoyuan Song

iScience

DOI

2019

A long noncoding RNA cluster-based genomic locus maintains proper development and visual function

Fei Wang, Da‐long Ren, Xiaolin Liang, Shengwei Ke, Bowen Zhang, Bing Hu, Xiaoyuan Song, Xiangting Wang

Nucleic Acids Research

DOI

2019

The function of lncRNAs in aging-related diseases and 3D genome

Wanying Zhang, Tengfei Hu, Xiaoyuan Song

Translational Medicine of Aging

DOI

2019

piRDisease v1.0: a manually curated database for piRNA associated diseases

Muhammad Azhar, Ramay Waheed, Nauman Ali Khan, Hong Jiang, Xiaoyuan Song

Database

DOI

2018

Correction to: The key role of CYC2 during meiosis in Tetrahymena Thermophila

Qianlan Xu, Ruoyu Wang, Amr R. Ghanam, Guanxiong Yan, Wei Miao, Xiaoyuan Song

Protein & Cell

DOI

2018

Excessive nerve growth factor impairs bidirectional communication between the oocyte and cumulus cells resulting in reduced oocyte competence

Yiwen Zhai, Guidong Yao, Faiza Rao, Yong Wang, Xiaoyuan Song, Fei Sun

Reproductive Biology and Endocrinology

DOI

2017

细胞衰老过程中三维转录调控机制研究

曹俊，程庆宇，罗正誉，彭琦，吴衍，宋晓元

《中国科学:生命科学》

2017

Shining the Light on Senescence Associated LncRNAs

Amr R. Ghanam, Qianlan Xu, Shengwei Ke, Muhammad Azhar, Qingyu Cheng, Xiaoyuan Song

Aging and Disease

DOI

2017

Mechanisms of three-dimensional transcriptional regulation in cell senescence

Jun Cao, Q. Cheng, Zheng-Yu Luo, Q. Peng, Yan Wu, Xiaoyuan Song

DOI

2016

长链非编码RNA与脑衰老的研究进展

王斐，宋晓元

《生命科学》

2016

LncRNAs: The Ideal Composer of the Melody for Life

Q. Cheng, Sheng-Wei Ke, Amr R Salem, Xiaoyuan Song

DOI

2015

Three-dimensional regulation of transcription

Jun Cao, Zhengyu Luo, Qingyu Cheng, Qianlan Xu, Yan Zhang, Fei Wang, Yan Wu, Xiaoyuan Song

Protein & Cell

DOI

2015

Enhancer-bound LDB1 regulates a corticotrope promoter-pausing repression program

Feng Zhang, Bogdan Tanasă, Daria Merkurjev, Chijen R. Lin, Xiaoyuan Song, Wenbo Li, Yuliang Tan, Zhijie Liu, Jie Zhang, Kenneth A. Ohgi, Anna Krones, Dorota Skowronska‐Krawczyk, Michael G. Rosenfeld

Proceedings of the National Academy of Sciences

DOI

2015

Downregulation of miR-320a/383-sponge-like long non-coding RNA NLC1-C (narcolepsy candidate-region 1 genes) is associated with male infertility and promotes testicular embryonal carcinoma cell proliferation

Ming‐Chi Lu, H Tian, Y-X. Cao, Xiaojin He, L Chen, Xiaoyuan Song, Peipei Ping, Hao Huang, Fei Sun

Cell Death and Disease

DOI

2015

Condensin I and II Complexes License Full Estrogen Receptor α-Dependent Enhancer Activation

Wenbo Li, Yi-ren Hu, Soohwan Oh, Qi Ma, Daria Merkurjev, Xiaoyuan Song, Xiaoping Zhou, Zhijie Liu, B. Tanasa, Xin-Jian He, A. Chen, Kenny Ohgi, Jie Zhang, Wen Liu, M. Rosenfeld

Molecules and Cells

DOI

2014

Enhancer Activation Requires trans-Recruitment of a Mega Transcription Factor Complex

Zhijie Liu, Daria Merkurjev, Feng Yang, Wenbo Li, Soohwan Oh, Meyer J. Friedman, Xiaoyuan Song, Feng Zhang, Qi Ma, Kenneth A. Ohgi, Anna Krones, Michael G. Rosenfeld

Cell

DOI

2013

Functional Importance of eRNAs for Estrogen-dependent Transcriptional Activation Events

Wenbo Li, D. Notani, Qi Ma, B. Tanasa, Esperanza Núñez, A. Chen, Daria Merkurjev, Jie Zhang, K. Ohgi, Xiaoyuan Song, Soohwan Oh, H. Kim, C. Glass, M. Rosenfeld

Nature

DOI

2012

The nonhistone, N-terminal tail of an essential, chimeric H2A variant regulates mitotic H3-S10 dephosphorylation.

Xiaoyuan Song, J. Bowen, W. Miao, Yi-Fan Liu, M. Gorovsky

Genes & Development

DOI

2012

Promoter-associated noncoding RNA from the CCND1 promoter.

Xiaoyuan Song, Xiang-Ting Wang, S. Arai, R. Kurokawa

Methods in molecular biology

DOI

2011

9p21 DNA variants associated with Coronary Artery Disease impair IFNγ signaling response

O. Harismendy, D. Notani, Xiaoyuan Song, Nazli G. Rahim, B. Tanasa, Nathaniel D. Heintzman, Bing Ren, Xiang-Dong Fu, E. Topol, M. Rosenfeld, Kelly A. Frazer

Nature

DOI

2011

The long arm of long noncoding RNAs: roles as sensors regulating gene transcriptional programs.

Xiang-Ting Wang, Xiaoyuan Song, C. Glass, M. Rosenfeld

Cold Spring Harbor Perspectives in Biology

DOI

2010

Molecular mechanisms of a disease susceptibility variant of SIRT1: Genotoxic stress‐induced, CTCF‐dependent activation of SIRT1 gene expression

Xiaoyuan Song, Miook Cho, Jeehae Han, H. Hazuda, R. Duggirala, J. Blangero, M. Rosenfeld, Y. Suh

DOI

2008

Induced ncRNAs Allosterically Modify RNA Binding Proteins in cis to Inhibit Transcription

Xiang-Ting Wang, S. Arai, Xiaoyuan Song, D. Reichart, Kun Du, G. Pascual, P. Tempst, M. Rosenfeld, C. Glass, R. Kurokawa

Nature

DOI

2007

Phosphorylation of the SQ H2A.X Motif Is Required for Proper Meiosis and Mitosis in Tetrahymena thermophila

Xiaoyuan Song, Elizabeta Gjoneska, Q. Ren, S. Taverna, C. Allis, M. Gorovsky

Molecular and Cellular Biology

DOI

2006

Unphosphorylated H1 Is Enriched in a Specific Region of the Promoter when CDC2 Is Down-Regulated during Starvation

Xiaoyuan Song, M. Gorovsky

Molecular and Cellular Biology

DOI

2005

Elimination of Foreign DNA during Somatic Differentiation in Tetrahymena thermophila Shows Position Effect and Is Dosage Dependent

Yi-Fan Liu, Xiaoyuan Song, M. Gorovsky, K. Karrer

Eukaryotic Cell

DOI

2005

The H1 Phosphorylation State Regulates Expression of CDC2 and Other Genes in Response to Starvation in Tetrahymena thermophila

Y. Dou, Xiaoyuan Song, Yi-Fan Liu, M. Gorovsky

Molecular and Cellular Biology

DOI

2002

A robust inducible-repressible promoter greatly facilitates gene knockouts, conditional expression, and overexpression of homologous and heterologous genes in Tetrahymena thermophila

Yuhua Shang, Xiaoyuan Song, J. Bowen, Robert Corstanje, Yan Gao, J. Gaertig, M. Gorovsky

Proceedings of the National Academy of Sciences of the United States of America

DOI

会议论文

2017

The Higher Order Chromatin Reorganization during mammalian spermatogenesis

Zhengyu Luo, Xiaorong Wang, Ruoyu Wang, Fei Sun, Xiaoyuan Song

《中国生理学会生殖科学专业委员会—中国动物学会生殖生物学分会第二次联合学术年会暨“生殖科学专业委员会第二次学术交流会”和“生殖生物学分会第十六次学术年会”论文集》

2016

lncRNA Cb059 affect functional-specific genes of cerebellum in aging process

王斐，Sisi Ma，Juan Shi，宋晓元

《第九届全国核糖核酸学术讨论会》

2016

Functions and mechanisms of lncRNAs in aging processes

程庆宇，Fei Wang，Sisi Ma，Juan Shi，宋晓元

《第九届全国核糖核酸学术讨论会论文集》

2016

Identification and functional analysis of a cerebellum highly expressed long noncoding RNA

Bowen Zhang, Xiaolin Liang, Xiaoyuan Song, Xiangting Wang

《第九届海内外华人神经科学家研讨会》

2015

Three-dimensional regulation of transcription in brain aging

Fei Wang, Zhengyu Luo, Zhi Liang, Jun Cao, Cheng Xu, Hao Wang, Qingyu Cheng, Qingyuan Zhu, Xiaoyuan Song

《2015中国（南京）国际生物医药创新与合作大会暨第六届国际DNA和基因组活动周——2015第五届国际分子与细胞生物学大会会刊》

预印本

2024

Recruitment of CTCF to the SIRT1 promoter after Oxidative Stress mediates Cardioprotective Transcription

T Wagner, Priyanka Priyanka, Rudi Micheletti, Meyer J. Friedman, Sreejith J. Nair, Amir Gamliel, Havilah Taylor, Xiaoyuan Song, Miook Cho, Soohwan Oh, Wenbo Li, Jeehae Han, Kenneth A. Ohgi, Madeline Abrass, Agnieszka D’Antonio‐Chronowska, Matteo D’Antonio, Helen P. Hazuda, Ravindranath Duggirala, John Blangero, Sheng Ding, Carlos Guzmann, Kelly A. Frazer, Aneel K. Aggarwal, Alice E. Zemljic‐Harpf, Michael G. Rosenfeld, Yousin Suh

bioRxiv (Cold Spring Harbor Laboratory)

DOI

2022

NicE-C efficiently reveals open chromatin–associated chromosome interactions at high resolution

Zhengyu Luo, Ran Zhang, Tengfei Hu, Yuting Zhu, Yueming Wu, Wenfei Li, Zhi Zhang, Xuebiao Yao, Haiyi Liang, Xiaoyuan Song

Genome Research

DOI

2020

Rearrangement of macronucleus chromosomes correspond to TAD-like structures of micronucleus chromosomes in Tetrahymena thermophila

Zhengyu Luo, Tengfei Hu, Hong Jiang, Ruoyu Wang, Qianlan Xu, Simo V. Zhang, Jun Cao, Xiaoyuan Song

Genome Research

DOI

2019

Three-dimensional genome reorganization during mouse spermatogenesis

Zhengyu Luo, Xiaorong Wang, Ruoyu Wang, Jian Chen, Yusheng Chen, Qianlan Xu, Jun Cao, Xiaowen Gong, Ji Wu, Yun‐Gui Yang, Wenbo Li, Chunsheng Han, Fei Sun, Xiaoyuan Song

bioRxiv (Cold Spring Harbor Laboratory)

DOI

研究方向

lncRNA与三维基因组在脑衰老中的转录调控lncRNA/染色质互作在减数分裂与精子发生中的调控

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