于婷｜山东大学｜学者主页

期刊论文

2026

TransGram for heterogeneity-aware transcriptome reconstruction from long read RNA-Seq data

Zitong Ren, Junhai Qi, Renmin Han, Shengkai Guo, Jiahao Li, Mingyu Liu, Guojun Li, Ting Yu

Nature Communications

DOI

2025

Gene fusion detection in long-read transcriptome sequencing data with GFvoter

Xiaolan Zhao, Xiaolan Zhao, Zitong Ren, Enfeng Qi, Enfeng Qi, Xiaoyu Zhao, Xiaoyu Zhao, Guojun Li, Ting Yu

BMC Genomics

DOI

2024

Highly efficient clustering of long-read transcriptomic data with GeLuster

Junchi Ma, Xiaoyu Zhao, Enfeng Qi, Renmin Han, Ting Yu, Guojun Li

Bioinformatics

DOI

2024

Generating barcodes for nanopore sequencing data with PRO

Ting Yu, Zitong Ren, Xin Gao, Guojun Li, Renmin Han

Fundamental Research

DOI

2023

Using Deep Learning to Classify Full-Length Transcriptome Sequences

Weiguo Li, Junchi Ma, Cuiyuan Li, Ting Yu, Xuefeng Cui

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2023

ARBic: an all-round biclustering algorithm for analyzing gene expression data

Xiangyu Liu, Ting Yu, Xiaoyu Zhao, Chaoyi Long, Renmin Han, Zhengchang Su, Guojun Li

NAR Genomics and Bioinformatics

DOI

2023

Protocol for transcriptome assembly by the TransBorrow algorithm

Dengyi Zhao, Juntao Liu, Ting Yu

Biology Methods and Protocols

DOI

2022

Tiglon enables accurate transcriptome assembly via integrating mappings of different aligners

Xiaoyu Zhao, Ting Yu

iScience

DOI

2021

TransRef enables accurate transcriptome assembly by redefining accurate neo-splicing graphs

Ting Yu, Renmin Han, Zhaoyuan Fang, Zengchao Mu, Hongyu Zheng, Juntao Liu

Briefings in Bioinformatics

DOI

2020

基于二代RNA-seq数据的转录组组装算法研究

于婷

《山东大学》

2020

iPAC: a genome-guided assembler of isoforms via phasing and combing paths

Ting Yu, Juntao Liu, Xin Gao, Guojun Li

Bioinformatics

DOI

2019

TransLiG: a de novo transcriptome assembler that uses line graph iteration

Juntao Liu, Ting Yu, Zengchao Mu, Guojun Li

Genome biology

DOI

2016

BinPacker: Packing-Based De Novo Transcriptome Assembly from RNA-seq Data

Juntao Liu, Guojun Li, Zheng Chang, Ting Yu, Bingqiang Liu, Rick McMullen, Pengyin Chen, Xiuzhen Huang

PLoS Computational Biology

DOI

2016

TransComb: genome-guided transcriptome assembly via combing junctions in splicing graphs

Juntao Liu, Ting Yu, Tao Jiang, Guojun Li

Genome biology

DOI

预印本

2025

GLASS: A Graph Learning Algorithm for Screening Splice-Aware Alignments of Long-Read RNA-seq data

Jiahao Li, Guojun Li, Ting Yu

bioRxiv (Cold Spring Harbor Laboratory)

DOI

2022

TransMeta simultaneously assembles multisample RNA-seq reads

Ting Yu, Xiaoyu Zhao, Guojun Li

Genome Research

DOI

2020

TransBorrow: genome-guided transcriptome assembly by borrowing assemblies from different assemblers

Ting Yu, Zengchao Mu, Zhaoyuan Fang, Xiaoping Liu, Xin Gao, Juntao Liu

Genome Research

DOI

于婷

精选作品

期刊论文

TransGram for heterogeneity-aware transcriptome reconstruction from long read RNA-Seq data

Gene fusion detection in long-read transcriptome sequencing data with GFvoter

Highly efficient clustering of long-read transcriptomic data with GeLuster

Generating barcodes for nanopore sequencing data with PRO

Using Deep Learning to Classify Full-Length Transcriptome Sequences

ARBic: an all-round biclustering algorithm for analyzing gene expression data

Protocol for transcriptome assembly by the TransBorrow algorithm

Tiglon enables accurate transcriptome assembly via integrating mappings of different aligners

TransRef enables accurate transcriptome assembly by redefining accurate neo-splicing graphs

基于二代RNA-seq数据的转录组组装算法研究

iPAC: a genome-guided assembler of isoforms via phasing and combing paths

TransLiG: a de novo transcriptome assembler that uses line graph iteration

BinPacker: Packing-Based De Novo Transcriptome Assembly from RNA-seq Data

TransComb: genome-guided transcriptome assembly via combing junctions in splicing graphs

预印本

GLASS: A Graph Learning Algorithm for Screening Splice-Aware Alignments of Long-Read RNA-seq data

TransMeta simultaneously assembles multisample RNA-seq reads

TransBorrow: genome-guided transcriptome assembly by borrowing assemblies from different assemblers

研究方向