冯好娣｜山东大学｜学者主页

2025

VirB: A Virus Hierarchical Classification Method Based on ModernBERT

Haizhen Huang, Haodi Feng, Daming Zhu

Lecture notes in computer science

DOI

2024

FOKHic: A Framework of $${\varvec{k}}$$-mer Based Hierarchical Classification

Yu Zhang, Yang Zhou, Haodi Feng, Daming Zhu

Lecture notes in computer science

DOI

2023

Minimize Maximum Coverage of Fragment Alignment Selection

Yuyang Wang, Hai-Tao Jiang, Haodi Feng, Daming Zhu

IEEE International Conference on Bioinformatics and Biomedicine

DOI

2023

New approximation algorithms for RNA secondary structures prediction problems by local search

Aizhong Zhou, Haodi Feng, Jiong Guo, Hai-Tao Jiang, Nan Liu, Binhai Zhu, Da-Ming Zhu

Theoretical Computer Science

DOI

2022

DLmeta: a deep learning method for metagenomic identification

Yu Zhang, Chenchen Li, Haodi Feng, Daming Zhu

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2022

Longest k-tuple Common Sub-Strings

Tiantian Li, Da-Ming Zhu, Hai-Tao Jiang, Haodi Feng, Xuefeng Cui

IEEE International Conference on Bioinformatics and Biomedicine

DOI

2022

Approximation algorithms for sorting by bounded singleton moves

Shengjun Xie, Haodi Feng, Hai-Tao Jiang, Da-Ming Zhu

Theoretical Computer Science

DOI

2021

TransCoord: Genome-guided Transcripts Assembly by Coordinating Candidate Paths into Two-phased Linear Programming

Chenchen Li, Jin Zhao, Haodi Feng, Daming Zhu

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI

2021

MultiTrans: An Algorithm for Path Extraction Through Mixed Integer Linear Programming for Transcriptome Assembly

Jin Zhao, Haodi Feng, Da-Ming Zhu, Yu Lin

IEEE/ACM Transactions on Computational Biology & Bioinformatics

DOI

2021

Sorting a Permutation by Best Short Swaps

Shu Zhang, Da-Ming Zhu, Hai-Tao Jiang, Jiong Guo, Haodi Feng, Xiaowen Liu

Algorithmica

DOI

2020

Corrections to "IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads"

Jin Zhao, Haodi Feng, Da-Ming Zhu, Chi Zhang, Ying Xu

IEEE ACM Trans. Comput. Biol. Bioinform.

DOI

2019

DTA-SiST: de novo transcriptome assembly by using simplified suffix trees

Jin Zhao, Haodi Feng, Da-Ming Zhu, Chi Zhang, Ying Xu

BMC Bioinformatics

DOI

2019

An Approximation Algorithm for Sorting by Bounded Singleton Moves

Sheng-kun Xie, Haodi Feng, Hai-Tao Jiang, Jun-Feng Luan, Da-Ming Zhu

International Computing and Combinatorics Conference

DOI

2018

IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads

Jin Zhao, Haodi Feng, Da-Ming Zhu, Chi Zhang, Ying Xu

IEEE/ACM Transactions on Computational Biology & Bioinformatics

DOI

2018

The Longest Common Exemplar Subsequence Problem

Shu Zhang, Ruizhi Wang, Da-Ming Zhu, Hai-Tao Jiang, Haodi Feng, Jiong Guo, Xiaowen Liu

IEEE International Conference on Bioinformatics and Biomedicine

DOI

2018

Can a permutation be sorted by best short swaps?

Shu Zhang, Da-Ming Zhu, Hai-Tao Jiang, Jing-Jing Ma, Jiong Guo, Haodi Feng

Annual Symposium on Combinatorial Pattern Matching

DOI

2018

PASA: Identifying More Credible Structural Variants of Hedou12

Huiqiang Jia, Haichao Wei, Da-Ming Zhu, Ruizhi Wang, Haodi Feng, Xian-Zhong Feng

International Conference on Intelligent Computing

DOI

2018

DTAST: A Novel Radical Framework for de Novo Transcriptome Assembly Based on Suffix Trees

Jin Zhao, Haodi Feng, Da-Ming Zhu, Chi Zhang, Ying Xu

International Conference on Intelligent Computing

DOI

2017

IsoTree: De Novo Transcriptome Assembly from RNA-Seq Reads - (Extended Abstract)

Jin Zhao, Haodi Feng, Da-Ming Zhu, Chi Zhang, Ying Xu

International Symposium on Bioinformatics Research and Applications

DOI

2017

Solving the maximum internal spanning tree problem on interval graphs in polynomial time

Xing-Fu Li, Haodi Feng, Hai-Tao Jiang, Bin-Hai Zhu

Theoretical Computer Science

DOI

2017

Improved Approximation Algorithm for the Maximum Base Pair Stackings Problem in RNA Secondary Structures Prediction

Aizhong Zhou, Hai-Tao Jiang, Jiong Guo, Haodi Feng, Nan Liu, Bin-Hai Zhu

International Computing and Combinatorics Conference

DOI

2016

Estimating isoform abundance by Particle Swarm Optimization

Jin Zhao, Haodi Feng

IEEE International Conference on Bioinformatics and Biomedicine

DOI

2016

A Polynomial Time Algorithm for Finding a Spanning Tree with Maximum Number of Internal Vertices on Interval Graphs

Xing-Fu Li, Haodi Feng, Hai-Tao Jiang, Bin-Hai Zhu

Frontiers in Algorithmics

DOI

2014

An 5/4-Approximation Algorithm for Sorting Permutations by Short Block Moves

Hai-Tao Jiang, Haodi Feng, Da-Ming Zhu

International Symposium on Algorithms and Computation

DOI

2013

最小化完成时间和加惩罚值和的批调度问题

李修倩，冯好娣，孙铮

《计算机研究与发展》

2012

Explore the Solution Space of Transforming Permutation by Reversals and Deletions

Zhiliang Zhang, Haodi Feng, Peng Li

DOI

2009

Parameterized Complexity of Finding Elementary Modes in Metabolic Networks

Hong Liu, Haodi Feng, Da-Ming Zhu

2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing

DOI

2009

Parameterized Complexity of Inverse Scope Problems in Metabolic Networks

Hong Liu, Haodi Feng, Da-Ming Zhu

WASE International Conference on Information Engineering

DOI

2009

A translocation, insertion and deletion distance formula for sorting genomes

Fanchang Hao, Jun-Feng Luan, Da-Ming Zhu, Haodi Feng

International Conference on Crowd Science and Engineering

DOI

2008

一种有到达时间的多处理器混合流水车间调度的遗传算法(英文)

卢申朋，冯好娣，刘宏，栾峻峰

《计算机与数字工程》

2007

欧氏空间货郎担问题的一个多项式时间近似方案的改进与实现

赵卫中，冯好娣，朱大铭

《计算机研究与发展》

2007

An Ensemble Classifier for Predicting Eukaryotic Protein Subcellular Locations

Hong Liu, Darning Zhu, Haodi Feng

International Conferences on Biomedical and Bioinformatics Engineering

DOI

2007

Prediction of Protein Subcellular Locations by Combining K-Local Hyperplane Distance Nearest Neighbor

Hong Liu, Haodi Feng, Da-Ming Zhu

International Conference on Advanced Data Mining and Applications

DOI

2000

(0,mf-1)-图中具有某些性质的(0,f)-因子

冯好娣

《山东大学学报(理学版)》

1999

ON ORTHOGONAL (0, f)-FACTORIZATIONS

Haodi Feng

DOI

1998

RESEARCH ANNOUNCEMENTS

冯好娣

《数学进展》

1998

与星正交的[0,kj]m1-因子分解

冯好娣

《系统科学与数学》

精选作品

期刊论文

VirB: A Virus Hierarchical Classification Method Based on ModernBERT

FOKHic: A Framework of $${\varvec{k}}$$-mer Based Hierarchical Classification

Minimize Maximum Coverage of Fragment Alignment Selection

New approximation algorithms for RNA secondary structures prediction problems by local search

DLmeta: a deep learning method for metagenomic identification

Longest k-tuple Common Sub-Strings

Approximation algorithms for sorting by bounded singleton moves

TransCoord: Genome-guided Transcripts Assembly by Coordinating Candidate Paths into Two-phased Linear Programming

MultiTrans: An Algorithm for Path Extraction Through Mixed Integer Linear Programming for Transcriptome Assembly

Sorting a Permutation by Best Short Swaps

Corrections to "IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads"

DTA-SiST: de novo transcriptome assembly by using simplified suffix trees

An Approximation Algorithm for Sorting by Bounded Singleton Moves

IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads

The Longest Common Exemplar Subsequence Problem

Can a permutation be sorted by best short swaps?

PASA: Identifying More Credible Structural Variants of Hedou12

DTAST: A Novel Radical Framework for de Novo Transcriptome Assembly Based on Suffix Trees

IsoTree: De Novo Transcriptome Assembly from RNA-Seq Reads - (Extended Abstract)

Solving the maximum internal spanning tree problem on interval graphs in polynomial time

Improved Approximation Algorithm for the Maximum Base Pair Stackings Problem in RNA Secondary Structures Prediction

Estimating isoform abundance by Particle Swarm Optimization

A Polynomial Time Algorithm for Finding a Spanning Tree with Maximum Number of Internal Vertices on Interval Graphs

An 5/4-Approximation Algorithm for Sorting Permutations by Short Block Moves

最小化完成时间和加惩罚值和的批调度问题

Explore the Solution Space of Transforming Permutation by Reversals and Deletions

Parameterized Complexity of Finding Elementary Modes in Metabolic Networks

Parameterized Complexity of Inverse Scope Problems in Metabolic Networks

A translocation, insertion and deletion distance formula for sorting genomes

一种有到达时间的多处理器混合流水车间调度的遗传算法(英文)

欧氏空间货郎担问题的一个多项式时间近似方案的改进与实现

An Ensemble Classifier for Predicting Eukaryotic Protein Subcellular Locations

Prediction of Protein Subcellular Locations by Combining K-Local Hyperplane Distance Nearest Neighbor

(0,mf-1)-图中具有某些性质的(0,f)-因子

ON ORTHOGONAL (0, f)-FACTORIZATIONS

RESEARCH ANNOUNCEMENTS

与星正交的[0,kj]m1-因子分解

研究方向