丁彦蕊

2026

A Biophysical Prior-Based Hierarchical Graph Pooling Strategy for Protein Function Prediction

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2026

Multi-view identification of key features affecting xylanase thermostability

Computational Biology and Chemistry

DOI

2026

HAGGNN : Hydration‐Aware Geometric Graph Neural Network for Protein Thermal Stability Prediction

Proteins Structure Function and Bioinformatics

DOI

2025

融合图嵌入和网络拓扑特征的蛋白质耐热性预测模型研究

《生物医学工程学杂志》

2025

Prediction of Homologous Protein Thermostability at the Single-Cell Level by Incorporating Explicit and Implicit Sequence Features

Current Bioinformatics

DOI

2025

A Scalable and Robust Ensemble Deep Learning Method for Predicting Drug-Target Interactions

Interdisciplinary Sciences Computational Life Sciences

DOI

2025

[Research on prediction model of protein thermostability integrating graph embedding and network topology features].

PubMed

DOI

2025

Integrating reduced amino acid with language models for prediction of protein thermostability

Food Bioscience

DOI

2025

The influence of reduced amino acid alphabets on prediction orthologous protein thermostability

Biologia

DOI

2025

RAANMF: An adaptive sequence feature representation method for predictions of protein thermostability, PPI, and drug–target interaction

Future Generation Computer Systems

DOI

2024

基于复杂网络理论的酵母菌PPI网络中关键蛋白质与核心蛋白质组的识别

《中国生物化学与分子生物学报》

2024

The influence of residue interaction on thermal stability of lipase based on dynamic graph embedding

Food Bioscience

DOI

2024

Identifying Diagnostic Biomarkers for Autism Spectrum Disorder From Higher-order Interactions Using the PED Algorithm

Neuroinformatics

DOI

2024

CDCS-TCM: A framework based on complex network theory to analyze the causality and dynamic correlation of substances in the metabolic process of traditional Chinese medicine

Journal of Ethnopharmacology

DOI

2024

Prediction of Drug-Target Interactions With High- Quality Negative Samples and a Network-Based Deep Learning Framework

IEEE Journal of Biomedical and Health Informatics

DOI

2023

多源描述符融合的药物-靶标相互作用预测框架

《西北大学学报(自然科学版)》

2023

基于药物-靶点-疾病关联网络的丹参-降香药对治疗缺血性脑卒中的作用机制探究及候选中药识别

《生物医学工程学杂志》

2023

DeepPPThermo: A Deep Learning Framework for Predicting Protein Thermostability Combining Protein-Level and Amino Acid-Level Features

Journal of Computational Biology

DOI

2023

The Dynamical Biomarkers in Functional Connectivity of Autism Spectrum Disorder Based on Dynamic Graph Embedding

Interdisciplinary Sciences Computational Life Sciences

DOI

2023

[Investigation of the mechanism of action and identification of candidate traditional Chinese medicines for the treatment of ischemic stroke in the Danshen-Jiangxiang pair based on drug-target-disease association network].

PubMed

DOI

2023

GCNA-Cluster: A Gene Co-Expression Network Alignment to Cluster Cancer Patients Algorithm for Identifying Subtypes of Pancreatic Ductal Adenocarcinoma

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2022

RSC-based differential model with correlation removal for improving multi-omics clustering

Journal of Theoretical Biology

DOI

2022

Predicting Binding Affinity Between MHC-I Receptor and Peptides Based on Molecular Docking and Protein-peptide Interaction Interface Characteristics

Letters in Drug Design & Discovery

DOI

2022

A 70‑RNA model based on SVR and RFE for predicting the pancreatic cancer clinical prognosis

Methods

DOI

2022

Identification of Anticancer and Anti-inflammatory Drugs from Drugtarget Interaction Descriptors by Machine Learning

Letters in Drug Design & Discovery

DOI

2021

分子通讯与木聚糖酶耐热性的关系研究

《基因组学与应用生物学》

DOI

2021

水介导的通讯路径对脂肪酶热稳定性的影响

《食品与生物技术学报》

2021

Human skeleton representation for 3D action recognition based on complex network coding and LSTM

Journal of Visual Communication and Image Representation

DOI

2021

Dissecting the critical pathway crosstalk mechanisms of thyroid cancer based on drug-target genes and disease genes

Biologia

DOI

2021

ACHP: A Web Server for Predicting Anti-Cancer Peptide and Anti-Hypertensive Peptide

International Journal of Peptide Research and Therapeutics

DOI

2021

Determination of the key ccRCC-related molecules from monolayer network to three-layer network

Cancer Genetics

DOI

2021

Community evolution and frequent subgraph patterns affect the thermostability of B. subtilis lipase A

Food Bioscience

DOI

2021

Identification of subtype specific biomarkers of clear cell renal cell carcinoma using random forest and greedy algorithm

Biosystems

DOI

2020

3D卷积神经网络的结构优化及中枢神经系统药物的识别

《西北大学学报(自然科学版)》

DOI

2020

动态残基网络社团视角下的木聚糖酶耐热性分析

《中国生物化学与分子生物学报》

DOI

2020

The Quantitative Structure-Activity Relationships between GABAA Receptor and Ligands based on Binding Interface Characteristic

Current Computer - Aided Drug Design

DOI

2020

Identification of the Key Factors Related to Bladder Cancer by lncRNA-miRNA-mRNA Three-Layer Network

Frontiers in Genetics

DOI

2020

T-DYNMOGA-Qw: Detecting Community From Dynamic Residue Interaction Energy Network and Its Application in Analyzing Lipase Thermostability

IEEE Access

DOI

2019

残基相互作用网络特征与木聚糖酶耐热性的关系

《中国生物化学与分子生物学报》

DOI

2019

基于残基-水作用网络的木聚糖酶耐热性研究

《食品与生物技术学报》

2019

Identification of Key Features of CNS Drugs Based on SVM and Greedy Algorithm

Current Computer - Aided Drug Design

DOI

2019

Identification of the complex regulatory relationships related to gastric cancer from lncRNA‐miRNA‐mRNA network

Journal of Cellular Biochemistry

DOI

2019

Thermostability of Lipase A and Dynamic Communication Based on Residue Interaction Network

Protein and Peptide Letters

DOI

2019

Probing the Relation Between Community Evolution in Dynamic Residue Interaction Networks and Xylanase Thermostability

IEEE Transactions on Computational Biology and Bioinformatics

DOI

2018

基于频繁项集挖掘和连续帧间差分的脂肪酶时-空结构模式与耐热性的关系

《中国生物化学与分子生物学报》

2018

PPI网络比对用于植物乳杆菌的糖代谢研究

《计算机工程与应用》

2018

基于残基相互作用网络比对的木聚糖酶热稳定性研究

《中国生物化学与分子生物学报》

2017

基于群智能的蛋白质耐热温度预测研究

《计算机工程与应用》

2017

The Relation Between Lipase Thermostability and Dynamics of Hydrogen Bond and Hydrogen Bond Network Based on Long Time Molecular Dynamics Simulation

Protein and Peptide Letters

DOI

2017

The Thermo Stability of Lipase: Salt Bridge and Salt Bridge Network Perspective Based on Long Time Molecular Dynamics Simulation

DOI

2017

Using the Residue Interaction Network Improve the Classification of Thermophilic and Mesophilic Proteins

DOI

2015

Effect of Hubs in Amino Acid Network on Iron Superoxide Dismutase Stability

Current Bioinformatics

DOI

2015

Identifying the Communities in the Metabolic Network Using 'Component' Definition and Girvan-Newman Algorithm

International Symposium on Distributed Computing and Applications for Business Engineering and Science (DCABES)

DOI

2015

Communities in the iron superoxide dismutase amino acid network.

Journal of Theoretical Biology

DOI

2014

超氧化物歧化酶氨基酸网络的鲁棒性研究

《计算机与应用化学》

2014

基于ACO优化SVM参数的蛋白质耐热性预测

《计算机与应用化学》

2014

超氧化物歧化酶氨基酸网络与耐热性的关系研究

《生物物理学报》

2014

Comparison of protein-water interactions in psychrophilic, mesophilic, and thermophilic Fe-SOD.

Protein Peptide Letters

DOI

2013

竹黄菌固态发酵产竹红菌素条件的优化

《食品与生物技术学报》

2013

COMPARATIVE ANALYSIS OF METABOLIC NETWORKS IN MESOPHILIC AND THERMOPHILIC ARCHAEA METHANOGENS BASED ON MODULARITY

Journal of Biological Systems

DOI

2013

Conformational dynamics of xylanase a from Streptomyces lividans: Implications for TIM‐barrel enzyme thermostability

Biopolymers

DOI

2012

基于复杂网络理论的产甲烷常温菌和嗜热菌的代谢网络的拓扑与模块化的研究

《计算机与应用化学》

2012

BP和概率神经网络预测微生物热稳定性的比较

《服装学报》

2012

基于PCA-SVM混合算法的嗜热菌和常温菌网络特征的研究

《计算机与应用化学》

2012

环糊精葡萄糖基转移酶N-端热稳定性研究

《计算机与应用化学》

2012

Application of principal component analysis to determine the key structural features contributing to iron superoxide dismutase thermostability

Biopolymers

DOI

2012

Prediction of protein thermostability based on relieff-SVM algorithm

DOI

2012

Multiple sequence alignment using the Hidden Markov Model trained by an improved quantum-behaved particle swarm optimization

Information Sciences

DOI

2012

ReliefF-SVMアルゴリズムに基づく蛋白質熱安定性の予測 | 文献情報 | J-GLOBAL 科学技術総合リンクセンター

2011

产甲烷常温古细菌和嗜热古细菌代谢网络拓扑结构与功能间的关联性研究

《生命科学研究》

2011

缬氨酸的模拟移动床分离

《工业微生物》

2011

产甲烷常温菌和嗜热菌代谢网络特征的比较研究

《计算机与应用化学》

2011

Comparison of the structural basis for thermal stability between archaeal and bacterial proteins

Extremophiles

DOI

2010

系统发育与古细菌Val-tRNA合成酶耐热性的关系

《计算机与应用化学》

2010

QPSO算法柔性分子对接问题的研究

《计算机与应用化学》

2010

环糊精葡葡萄糖基转移酶热稳定性的研究

《计算机与应用化学》

2010

重建代谢网络及其结构与功能的分析

《计算机与应用化学》

2010

SVM的参数优化及在耐热酶和常温酶分类中的应用

《食品与生物技术学报》

2010

Identifying the Mesophilic and Thermophilic Proteins from Their Amino Acid Composition with ν-Support Vector Machines

Journal of Algorithms & Computational Technology

DOI

2010

A Review of Quantum-behaved Particle Swarm Optimization

IETE Technical Review

DOI

2010

Parameters Optimization of Support Vector Machine for Discriminating Thermophilic and Mesophilic Enzyme

Journal of Food Science and Biotechnology

2010

Multiple Sequence Alignment by Improved Hidden Markov Model Training and Quantum-Behaved Particle Swarm Optimization

LSMS/ICSEE

DOI

2010

QPSOBT: One codon usage optimization software for protein heterologous expression

2010

Study on the relationship between cyclodextrin glycosyltransferase's thermostability and salt bridge by molecular dynamics simulation.

Protein Peptide Letters

DOI

2009

Study on the Relationship between CGTase's Thermostability and Electrostatic Energy by Molecular Dynamics Simulation

International Conference on Information Engineering and Computer Science

DOI

2009

Structural and Functional Analysis of Giant Strong Component of Bacillus thuringiensis Metabolic Network

Brazilian Journal of Microbiology

DOI

2009

Exploring unfolding pathway of CGTase: insight from molecular dynamics simulation.

Rivista di biologia

DOI

2008

Pathway Hunter Tool在代谢途径分析中的应用

《计算机与应用化学》

2008

Clustering of Gene Expression Data with Quantum-Behaved Particle Swarm Optimization

Lecture notes in computer science

DOI

2008

Optimizing the codon usage of synthetic gene with QPSO algorithm

Journal of Theoretical Biology

DOI

2008

Robustness in B. thuringiensis metabolic network.

Rivista di biologia

DOI

2008

Exploring poly-beta-hydroxy-butyrate metabolism through network-based extreme pathway analysis.

Rivista di biologia

DOI

2007

二级结构组件与蛋白质耐热性的关系研究

《生物信息学》

2007

盐桥与全基因组微生物耐热性的关系研究

《华中农业大学学报》

2007

蛋白质空间结构属性与全基因组微生物耐热性的关系

《中国生物化学与分子生物学报》

2007

贝叶斯方法在蛋白质耐热性分类中的研究

《微计算机信息》

2007

用同源建模法探索提高脂肪酶的耐热性

《计算机与应用化学》

2007

模拟移动床色谱非线性的动态过程

《计算机与应用化学》

2007

氢键与蛋白质耐热性关系的研究

《计算机与应用化学》

2007

A Modified Quantum-Behaved Particle Swarm Optimization

Lecture notes in computer science

DOI

2007

Research on the relationship between secondary structure element and protein thermostability

2007

Relationship between Salt Bridge and Thermostability of Complete Genome Microorganisms

2006

蛋白质耐热性及其在食品中应用的研究进展

《食品与机械》

2006

Research advance on protein thermostability and its application in food science

2005

嗜热菌耐热性与蛋白质序列、结构和功能关系的生物信息学研究

《江南大学》

2005

基于氨基酸组成预测蛋白质热稳定性的v-支持向量机方法(英文)

《计算机与应用化学》

2005

模拟移动床色谱计算机辅助系统的设计

《计算机与应用化学》

2005

模拟移动床色谱分离体系模式与关键因子的计算机模拟研究

《计算机与应用化学》

2004

氨基酸组成对蛋白质耐热性的影响

《生物技术》

2004

非线性模拟移动床色谱的浮点编码遗传算法优化策略

《计算机与应用化学》

2004

竹黄菌固态发酵竹红菌素条件的研究

《生物技术》

2004

模拟移动床色谱技术及其应用

《色谱》

2004

The influence of dipeptide composition on protein thermostability

FEBS Letters

DOI

2004

Influence of Amino Acid Composition on Protein Thermostability

2003

离子交换法提取青霉素G的探索

《离子交换与吸附》

2003

基于浮点编码的遗传算法优化模拟移动床色谱分离木糖醇母液

《色谱》

2003

青霉素G阴离子态的稳定性影响因素研究

《中国抗生素杂志》

2003

工业色谱仿真软件的开发

《计算机与应用化学》

2002

十二烷基键合固定相的制备及在青霉素降解研究中的应用

《中国医药工业杂志》

2021

The m6A RNA methylation regulators related transcriptome for identification of pancreatic cancer subtypes and prognostic markers

Conference proceedings of 2021 4th International Conference on Algorithms, Computing and Artificial Intelligence (ACAi 2021)

DOI

2020

Construction of QSAR model between the ligand and γ-Aminobutyric acid type A receptor using support vector regression algorithm

Proceedings of 2020 19th International Symposium on Distributed Computing and Applications for Business Engineering and Science（DCABES 2020）

DOI