百晓学者学者目录

张玲玲

副教授、教授、讲师，中国海洋大学

精选作品

期刊论文

2026

Structural and mechanistic insights into the dual-nuclease defense protein Upx as an anti-phage system

Ruimin Zhou, Yingcan Liu, Qian Zhang, Zhenning Yin, Jiajing Tong, Chendi Zhang, Lingling Zhang, Xuzichao Li, Yan-Hao Zhao, Shu-Qin Zhang, Zhi-Kun Liu, Wei-Chang Chen, Nan Ji, Heng Zhang, Zhuang Li, Hang Yin, Sheng-Kai Zuo, Yong Wei

Nature Communications

DOI

2026

Spatially resolved single-cell atlas reveals the macroevolutionary trajectory of animal hearts

Shanshan Lian, Wei Wang, Ying Liu, Meina Lu, Wentao Han, Jiaxin Luo, Xuejiao Zhang, Yue Pang, Yuru Li, Yufeng Li, Yufeng Li, Yufeng Li, Xin Dang, Peiyan Wang, Yating Qin, Ning Tan, F Zhang, Runyi Zhang, Lidong Guo, Runyi Zhang, Lidong Guo, Lei Jiang, P. F. Zhang, Yuehuan Zhang, Zhe Qu, Shanshan Pan, Shanshan Pan, Yue Zhang, Naina Hu, Xiaomei Chen, Yun Cao, Wenbin Li, Xiaomei Chen, Junjie Shi, Shuaiqi Yang, Yuli Li, Xiawei Liu, Qiuyun Song, Lisui Bao, Rui Li, Yuli Li, Xiawei Liu, Jing Chen, Lingling Zhang, Rui Li, Xin Yu, Tao Yang, Jing Chen, Li Li, Mengqi Zhang, Li Li, Ruihua Zhang, Hongyan Li, Ying Gu, Xun Xu, Huanming Yang, Zhenmin Bao, Charles Geoffrey Burns, Caroline Erter Burns, Robert G. Kelly, Shi Wang, Yang Zhao, Ying Su, Guangyi Fan, Qun Liu, Shi Wang, Ji‐Feng Fei, Silin Pan, Silin Pan, Long Zhao

Science

DOI

2026

Whole genome DNA methylation atlas of the scallop Patinopecten yessoensis

Runyi Zhang, Danyang Wang, Sinuo Liu, Lisui Bao, Lingling Zhang, S Q Wang, Naina Hu, Shanshan Lian

Scientific Data

DOI

2026

FoxL2 exhibits two-stage expression and maintains the ovarian niche in a lophotrochozoan

Yaxin Yang, Ying Cao, Liangjie Liu, Lijing Zhang, Lijing Zhang, Tong Wang, Ya Shu, Xiaohui Ma, Guoqing Li, Xinyi Zhang, Lisui Bao, Xiaoting Huang, Xiaoting Huang, Zhenmin Bao, Shi Wang, Huilan Wei, Lingling Zhang, Lingling Zhang

Communications Biology

DOI

2025

Structural basis for RNA-guided DNA degradation by Cas5-HNH/Cascade complex

Yanan Liu, Lin Wang, Qian Zhang, Peng-Yu Fu, Lingling Zhang, Ying Yu, Heng Zhang, Hongtao Zhu

Nature Communications

DOI

2025

Insights into the compact CRISPR–Cas9d system

Jie Yang, Tongyao Wang, Ying Huang, Zhaoyi Long, Xuzichao Li, Shu-Qin Zhang, Lingling Zhang, Zhi-Kun Liu, Qian Zhang, Huabing Sun, Min-Jie Zhang, Hang Yin, Zhong-Min Liu, Heng Zhang

Nature Communications

DOI

2025

Transcriptome characterization of three main ganglia in Patinopecten yessoensis provides novel insights into a monophyletic origin of the bilaterian central nervous system

Xianhui Ning, Xiangchao Zhang, Xue Li, Jing Wang, Lingling Zhang, Xiaoli Hu, Zhenmin Bao

Comparative Biochemistry and Physiology Part D Genomics and Proteomics

DOI

2025

High-quality genome assembly of the azooxanthellate coral Tubastraea coccinea (Lesson, 1829)

Xiaomei Chen, Wentao Han, Xinyao Chang, Caiyin Tang, Kai Chen, Lisui Bao, Lingling Zhang, Jingjie Hu, Shi Wang, Zhenmin Bao

Scientific Data

DOI

2025

Marine evo-devo: New frontiers from Lophotrochozoa

Shanshan Lian, Jia Lv, Yuli Li, Lingling Zhang, Zhenmin Bao, Shi Wang

The Innovation

DOI

2025

Insights from the single-cell level: lineage trajectory and somatic-germline interactions during spermatogenesis in dwarf surfclam Mulinia lateralis

Yajuan Li, Huilan Wei, Xiaoting Dai, Lijing Zhang, Lijing Zhang, Liangjie Liu, Xiaomei Chen, Tian Liu, Ya Shu, Shi Wang, Shi Wang, Zhenmin Bao, Lingling Zhang, Lingling Zhang

BMC Genomics

DOI

2024

Structural basis for the activity of the type VII CRISPR–Cas system

Jie Yang, Xuzichao Li, Qiuqiu He, Xiaoshen Wang, Jing-Jing Tang, Tongyao Wang, Yi Zhang, Feiyang Yu, Shu-Qin Zhang, Zhi-Kun Liu, Lingling Zhang, Fumeng Liao, Hang Yin, Haiyan Zhao, Zeng-Qin Deng, Heng Zhang

Nature

DOI

2024

Structural basis for the type I-F Cas8-HNH system

Xuzichao Li, Yanan Liu, Jie Han, Lingling Zhang, Zhi-Kun Liu, Lin Wang, Shu-Qin Zhang, Qian Zhang, Peng-Yu Fu, Hang Yin, Hongtao Zhu, Heng Zhang

EMBO Journal

DOI

2024

Transcriptome Analysis Reveals the lncRNA-mRNA Co-expression Network Regulating the Aestivation of Sea Cucumber

Xiaomei Chen, Wentao Han, Rui Yang, Xuan Zhu, Shengwen Li, Yangfan Wang, Xue Sun, Yuli Li, Lisui Bao, Lingling Zhang, Shi Wang, Jing Wang

Marine Biotechnology

DOI

2024

MolluscDB 2.0: a comprehensive functional and evolutionary genomics database for over 1400 molluscan species

Fuyun Liu, Bingcheng Cai, Shanshan Lian, Xinyao Chang, Dongsheng Chen, Zhongqi Pu, Lisui Bao, Jing Wang, Jia Lv, Hongkun Zheng, Zhenmin Bao, Lingling Zhang, Shi Wang, Yuli Li

Nucleic Acids Research

DOI

2024

Advancing selective breeding in leopard coral grouper (P. leopardus) through development of a high-throughput image-based growth trait

Yangfan Wang, Chun Xin, Yurui Gao, Peiyu Li, Mingyi Wang, Shaoxuan Wu, Chaofan Jin, Lingling Zhang, Bo Wang, Zhenmin Bao, Jingjie Hu

Agriculture Communications

DOI

2024

Pan-evolutionary and regulatory genome architecture delineated by an integrated macro- and microsynteny approach

Hongwei Yu, Yuli Li, Wentao Han, Lisui Bao, Fuyun Liu, Yuanting Ma, Zhongqi Pu, Qifan Zeng, Lingling Zhang, Zhenmin Bao, Shi Wang

Nature Protocols

DOI

2023

Examination of the role of a novel transcription factor in activating Foxl2 and its potential involvement in the regulation of ovarian development in scallops

Shutong Fan, Xixi Li, Xiaolin Guo, Ruiqi Zhang, Yue Chen, Feng Zhao, Lingling Zhang, Zhenkui Qin, Zhifeng Zhang

Aquaculture

DOI

2022

Dynamic transcriptome analysis reveals the gene network of gonadal development from the early history life stages in dwarf surfclam Mulinia lateralis

Yajuan Li, Liangjie Liu, Lijing Zhang, Lijing Zhang, Huilan Wei, Shaoxuan Wu, Tian Liu, Ya Shu, Zujing Yang, Zujing Yang, Shi Wang, Zhenmin Bao, Lingling Zhang, Lingling Zhang

Biology of Sex Differences

DOI

2022

Adaptive Bird-Like Genome Miniaturization During the Evolution of Scallop Swimming Lifestyle

Yuli Li, Yaran Liu, Hongwei Yu, Fuyun Liu, Wentao Han, Qifan Zeng, Yuehuan Zhang, Lingling Zhang, Jingjie Hu, Zhenmin Bao, Shi Wang

Genomics Proteomics & Bioinformatics

DOI

2022

Interferon Regulatory Factors Functioned as Activators of the Interferon Pathway in the Scallop Chlamys farreri

Naina Hu, Shanshan Lian, Xiaomei Zhu, Xiaomei Chen, Fengzhi Sun, Lingling Zhang, Shi Wang, Zhenmin Bao, Jingjie Hu

Frontiers in Marine Science

DOI

2022

Genome-Wide Identification and Expression Profiling of the COMMD Gene Family in Four Bivalve Molluscs

Xiaomei Chen, Naina Hu, Shanshan Lian, Luoan Li, Fengzhi Sun, Lingling Zhang, Shi Wang, Zhenmin Bao, Jingjie Hu

Frontiers in Marine Science

DOI

2022

Discovery of Nanos1 and Nanos2/3 as Germ Cell Markers During Scallop Gonadal Development

Liangjie Liu, Tian Liu, Shaoxuan Wu, Yajuan Li, Huilan Wei, Lijing Zhang, Lijing Zhang, Ya Shu, Yaxin Yang, Qiang Xing, Shi Wang, Lingling Zhang, Lingling Zhang

Marine Biotechnology

DOI

2022

The Effect of Temperature on Gonadal Sex Differentiation of Yesso Scallop Patinopecten yessoensis

Tian Liu, Ruojiao Li, Liangjie Liu, Shaoxuan Wu, Lijing Zhang, Lijing Zhang, Yajuan Li, Huilan Wei, Ya Shu, Yaxin Yang, Wang Shi, Qiang Xing, Lingling Zhang, Lingling Zhang, Zhenmin Bao

Frontiers in Cell and Developmental Biology

DOI

2022

Decoding the byssus fabrication by spatiotemporal secretome analysis of scallop foot

Xiaoting Dai, Xuan Zhu, Lisui Bao, Xiaomei Chen, Yan Miao, Yangping Li, Yuli Li, Jia Lv, Lingling Zhang, Xiaoting Huang, Zhenmin Bao, Shi Wang, Jing Wang

Computational and Structural Biotechnology Journal

DOI

2021

香鱼(Plecoglossus altivelis)CC型趋化因子受体3(CCR3)基因的分子鉴定及其对鳗弧菌感染响应的研究

张玲玲，余莉，李长红，苗亮，陈炯

《海洋与湖沼》

2021

An efficient integrated approach for nonlethal DNA sampling and genome-wide genotyping in bivalve molluscs

Pingping Liu, Tianqi Zhang, Jia Lv, Cen Ma, Zhihui Yang, Xiaowen Huang, Lingling Zhang, Zhenmin Bao, Shi Wang

Aquaculture

DOI

2021

Targeted Genotyping of a Whole-Gene Repertoire by an Ultrahigh-Multiplex and Flexible HD-Marker Approach

Pingping Liu, Jia Lv, Cen Ma, Tianqi Zhang, Xiaowen Huang, Zhihui Yang, Lingling Zhang, Jingjie Hu, Shi Wang, Zhenmin Bao

Engineering

DOI

2021

Expansion of C1Q Genes in Zhikong Scallop and Their Expression Profiling After Exposure to the Toxic Dinoflagellates

Kexin Xu, Yinghui Wang, Shanshan Lian, Naina Hu, Xiaomei Chen, Xiaoting Dai, Lingling Zhang, Shi Wang, Jingjie Hu, Xiaoli Hu, Zhenmin Bao

Frontiers in Marine Science

DOI

2021

Expression of the Testis-Specific Serine/Threonine Kinases Suggests Their Role in Spermiogenesis of Bay Scallop Argopecten irradians

Xinru Xue, Lingling Zhang, Yajuan Li, Huilan Wei, Shaoxuan Wu, Tian Liu, Liangjie Liu, Qiang Xing, Shi Wang, Zhenmin Bao

Frontiers in Physiology

DOI

2021

Sexual Development of the Hermaphroditic Scallop Argopecten irradians Revealed by Morphological, Endocrine and Molecular Analysis

Huilan Wei, Wanru Li, Tian Liu, Yajuan Li, Liangjie Liu, Ya Shu, Lijing Zhang, Lijing Zhang, Shi Wang, Qiang Xing, Lingling Zhang, Lingling Zhang, Zhenmin Bao

Frontiers in Cell and Developmental Biology

DOI

2020

Seasonal variation of the thermal tolerance indicator ABT and the development of a rapid detection method in scallop Chlamys farreri

Qiang Xing, Jing Wang, Liping Hu, Yan Sun, Xiaoting Huang, Lingling Zhang, Wei Lu, Shi Wang, Jingjie Hu, Zhenmin Bao

Aquaculture

DOI

2020

MolluscDB: an integrated functional and evolutionary genomics database for the hyper-diverse animal phylum Mollusca

Fuyun Liu, Yuli Li, Hongwei Yu, Lingling Zhang, Jingjie Hu, Zhenmin Bao, Shi Wang

Nucleic Acids Research

DOI

2020

Potential GnRH and steroidogenesis pathways in the scallop Patinopecten yessoensis

Meiwei Zhang, Huilan Wei, Tian Liu, Wanru Li, Yajuan Li, Shi Wang, Qiang Xing, Xiaoli Hu, Lingling Zhang, Zhenmin Bao

The Journal of Steroid Biochemistry and Molecular Biology

DOI

2020

The evo‐devo of molluscs: Insights from a genomic perspective

Zhihui Yang, Lingling Zhang, Jingjie Hu, Jing Wang, Zhenmin Bao, Shi Wang

Evolution & Development

DOI

2020

Expression profiling of the Kdm genes in scallop Patinopecten yessoensis suggests involvement of histone demethylation in regulation of early development and gametogenesis

Zhenyi Guo, Lijing Zhang, Lijing Zhang, Yajuan Li, Shaoxuan Wu, Shi Wang, Lingling Zhang, Lingling Zhang, Zhenmin Bao

Comparative Biochemistry and Physiology Part B Biochemistry and Molecular Biology

DOI

2020

Identification and expression profiles of Fox transcription factors in the Yesso scallop (Patinopecten yessoensis)

Shaoxuan Wu, Yang Zhang, Yajuan Li, Huilan Wei, Zhenyi Guo, Shi Wang, Lingling Zhang, Zhenmin Bao

Gene

DOI

2019

Genome-Wide Identification and Characterization of SODs in Zhikong Scallop Reveals Gene Expansion and Regulation Divergence after Toxic Dinoflagellate Exposure

Shanshan Lian, Liang Zhao, Xiaogang Xun, Jiarun Lou, Moli Li, Xu Li, Shi Wang, Lingling Zhang, Xiaoli Hu, Zhenmin Bao

Marine Drugs

DOI

2019

Genome-wide association study reveals E2F3 as the candidate gene for scallop growth

Xianhui Ning, Xue Li, Jing Wang, Xiangchao Zhang, Lingling Kong, Deting Meng, Huizhen Wang, Yajuan Li, Lingling Zhang, Shi Wang, Xiaoli Hu, Zhenmin Bao

Aquaculture

DOI

2019

Integration of Biochemical, Cellular, and Genetic Indicators for Understanding the Aging Process in a Bivalve Mollusk Chlamys farreri

Shanshan Lian, Jing Wang, Lingling Zhang, Qiang Xing, Naina Hu, Sinuo Liu, Xiaoting Dai, Fengmei Zhang, Xiaoli Hu, Zhenmin Bao, Shi Wang

Marine Biotechnology

DOI

2019

Diverse expression regulation of Hsp70 genes in scallops after exposure to toxic Alexandrium dinoflagellates

Boyang Hu, Moli Li, Xiaohan Yu, Xiaogang Xun, Wei Lu, Xu Li, Yajuan Li, Jiarun Lou, Shi Wang, Lingling Zhang, Jie Cheng, Xiaoli Hu, Zhenmin Bao

Chemosphere

DOI

2019

Systematic identification and validation of the reference genes from 60 RNA-Seq libraries in the scallop Mizuhopecten yessoensis

Yajuan Li, Lingling Zhang, Ruojiao Li, Meiwei Zhang, Yangping Li, Hao Wang, Shi Wang, Zhenmin Bao

BMC Genomics

DOI

2019

Development of Novel Cardiac Indices and Assessment of Factors Affecting Cardiac Activity in a Bivalve Mollusc Chlamys farreri

Qiang Xing, Lingling Zhang, Yuqiang Li, Xinghai Zhu, Yangping Li, Haobing Guo, Zhenmin Bao, Wang Shi

Frontiers in Physiology

DOI

2019

A carotenoid oxygenase is responsible for muscle coloration in scallop

Xue Li, Shuyue Wang, Xiaogang Xun, Mengran Zhang, Shi Wang, Hengde Li, Liang Zhao, Qiang Fu, Huizhen Wang, Tingting Li, Shanshan Lian, Qiang Xing, Xu Li, Wei Wu, Lingling Zhang, Xiaoli Hu, Zhenmin Bao

Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids

DOI

2019

Dynamics of DNA Methylation and DNMT Expression During Gametogenesis and Early Development of Scallop Patinopecten yessoensis

Yangping Li, Lingling Zhang, Yajuan Li, Wanru Li, Zhenyi Guo, Ruojiao Li, Xiaoli Hu, Zhenmin Bao, Shi Wang

Marine Biotechnology

DOI

2019

Sequencing-Based Transcriptome-Wide Targeted Genotyping for Evolutionary and Ecological Studies

Xuan Zhu, Jing Wang, Jia Lv, Pingping Liu, Lingling Zhang, Wenqian Jiao, Cen Ma, Zhenmin Bao, Shi Wang

Evolutionary Bioinformatics

DOI

2018

FOXL2 and DMRT1L Are Yin and Yang Genes for Determining Timing of Sex Differentiation in the Bivalve Mollusk Patinopecten yessoensis

Ruojiao Li, Lingling Zhang, Wanru Li, Yang Zhang, Yangping Li, Meiwei Zhang, Liang Zhao, Xiaoli Hu, Shi Wang, Zhenmin Bao

Frontiers in Physiology

DOI

2018

Identification and Characterization of Neuropeptides by Transcriptome and Proteome Analyses in a Bivalve Mollusc Patinopecten yessoensis

Meiwei Zhang, Yangfan Wang, Yangping Li, Wanru Li, Ruojiao Li, Xinran Xie, Shi Wang, Xiaoli Hu, Lingling Zhang, Zhenmin Bao

Frontiers in Genetics

DOI

2018

Sea cucumber genome provides insights into saponin biosynthesis and aestivation regulation

Yuli Li, Ruijia Wang, Xiaogang Xun, Jing Wang, Lisui Bao, Ramesha B. Thimmappa, Jun Ding, Jingwei Jiang, Liheng Zhang, Tianqi Li, Jia Lv, Chuang Mu, Xiaoli Hu, Lingling Zhang, Jing Liu, Yuqiang Li, Lijie Yao, Wenqian Jiao, Yangfan Wang, Shanshan Lian, Zelong Zhao, Yaoyao Zhan, Xiaoting Huang, Huan Liao, Jia Wang, Hongzhen Sun, Xue Mi, Yu Xia, Qiang Xing, Wei Lu, Anne Osbourn, Zunchun Zhou, Yaqing Chang, Zhenmin Bao, Shi Wang

Cell Discovery

DOI

2017

Scallop genome reveals molecular adaptations to semi-sessile life and neurotoxins

Yuli Li, Xiaoqing Sun, Xiaoli Hu, Xiaogang Xun, Jinbo Zhang, Ximing Guo, Wenqian Jiao, Lingling Zhang, Weizhi Liu, Jing Wang, Ji Li, Yan Sun, Yan Miao, Xiaokang Zhang, Taoran Cheng, Guoliang Xu, Xiaoteng Fu, Yangfan Wang, Xinran Yu, Xiaoting Huang, Wei Lü, Jia Lv, Chuang Mu, Dawei Wang, Li Xu, Yu Xia, Yajuan Li, Zhihui Yang, Fengliang Wang, Lu Zhang, Qiang Xing, Huaiqian Dou, Xianhui Ning, Jinzhuang Dou, Yangping Li, Dexu Kong, Yaran Liu, Zhi Dong Jiang, Ruiqiang Li, Shi Wang, Zhenmin Bao

Nature Communications

DOI

2017

Genome-wide identification and expression profiling of the SOX gene family in a bivalve mollusc Patinopecten yessoensis

Jiachen Yu, Lingling Zhang, Yangping Li, Ruojiao Li, Meiwei Zhang, Wanru Li, Xinran Xie, Shi Wang, Xiaoli Hu, Zhenmin Bao

Gene

DOI

2016

Cardiac performance: a thermal tolerance indicator in scallops

Qiang Xing, Yangping Li, Haobing Guo, Qian Yu, Xiaoting Huang, Shi Wang, Xiaoli Hu, Lingling Zhang, Zhenmin Bao

Marine Biology

DOI

2016

Association of myostatin variants with growth traits of Zhikong scallop (Chlamys farreri)

Qiang Fu, Huihui� Guo, Liying Feng, Xue Li, Lingling Zhang, Shi Wang, Xiaoli Hu, Zhenmin Bao

Journal of Ocean University of China

DOI

2016

Serial sequencing of isolength RAD tags for cost-efficient genome-wide profiling of genetic and epigenetic variations

Shi Wang, Pingping Liu, Jia Lv, Yangping Li, Taoran Cheng, Lingling Zhang, Yu Xia, Hongzhen Sun, Xiaoli Hu, Zhenmin Bao

Nature Protocols

DOI

2016

Hsp70 gene expansions in the scallop Patinopecten yessoensis and their expression regulation after exposure to the toxic dinoflagellate Alexandrium catenella

Jie Cheng, Xiaogang Xun, Yifan Kong, Shuyue Wang, Zhihui Yang, Yajuan Li, Dexu Kong, Shi Wang, Lingling Zhang, Xiaoli Hu, Zhenmin Bao

Fish & Shellfish Immunology

DOI

2016

Long Non-Coding RNAs (lncRNAs) of Sea Cucumber: Large-Scale Prediction, Expression Profiling, Non-Coding Network Construction, and lncRNA-microRNA-Gene Interaction Analysis of lncRNAs in Apostichopus japonicus and Holothuria glaberrima During LPS Challenge and Radial Organ Complex Regeneration

Chuang Mu, Ruijia Wang, Tianqi Li, Yuqiang Li, Meilin Tian, Wenqian Jiao, Xiaoting Huang, Lingling Zhang, Xiaoli Hu, Wang Shi, Zhenmin Bao

Marine Biotechnology

DOI

2016

Transcriptome Sequencing and Comparative Analysis of Ovary and Testis Identifies Potential Key Sex-Related Genes and Pathways in Scallop Patinopecten yessoensis

Yangping Li, Lingling Zhang, Yan Sun, Xiaoli Ma, Jing Wang, Ruojiao Li, Meiwei Zhang, Shi Wang, Xiaoli Hu, Zhenmin Bao

Marine Biotechnology

DOI

2016

Characterization of three mitogen-activated protein kinases (MAPK) genes reveals involvement of ERK and JNK, not p38 in defense against bacterial infection in Yesso scallop Patinopecten yessoensis

Yan Sun, Lingling Zhang, Meiwei Zhang, Ruojiao Li, Yangping Li, Xiaoli Hu, Shi Wang, Zhenmin Bao

Fish & Shellfish Immunology

DOI

2016

Genome-wide identification, characterization and expression analyses of two TNFRs in Yesso scallop (Patinopecten yessoensis) provide insight into the disparity of responses to bacterial infections and heat stress in bivalves

Qiang Xing, Qian Yu, Huaiqian Dou, Jing Wang, Ruojiao Li, Xianhui Ning, Ruijia Wang, Shi Wang, Lingling Zhang, Xiaoli Hu, Zhenmin Bao

Fish & Shellfish Immunology

DOI

2016

Characterization of the TRAF3IP1 gene in Yesso scallop (Patinopecten yessoensis) and its expression in response to bacterial challenge

Jie Cheng, Jing Wang, Shuyue Wang, Ruojiao Li, Xianhui Ning, Qiang Xing, Xiaoli Ma, Lingling Zhang, Shi Wang, Xiaoli Hu, Zhenmin Bao

Genes & Genetic Systems

DOI

2015

Changes in global DNA methylation intensity and DNMT1 transcription during the aging process of scallop Chlamys farreri

Shanshan Lian, Yan He, Xue Li, Bosong Zhao, Rui Hou, Xiaoli Hu, Lingling Zhang, Zhenmin Bao

Journal of Ocean University of China

DOI

2015

The Rho GTPase Family Genes in Bivalvia Genomes: Sequence, Evolution and Expression Analysis

Xue Li, Ruijia Wang, Xiaogang Xun, Wenqian Jiao, Mengran Zhang, Shuyue Wang, Shi Wang, Lingling Zhang, Xiaoting Huang, Xiaoli Hu, Zhenmin Bao

PLoS ONE

DOI

2015

MethylRAD: a simple and scalable method for genome-wide DNA methylation profiling using methylation-dependent restriction enzymes

Shi Wang, Jia Lv, Lingling Zhang, Jinzhuang Dou, Yan Sun, Xue Li, Xiaoteng Fu, Huaiqian Dou, Junxia Mao, Xiaoli Hu, Zhenmin Bao

Open Biology

DOI

2015

Genome-wide identification and characterization of TRAF genes in the Yesso scallop (Patinopecten yessoensis) and their distinct expression patterns in response to bacterial challenge

Jing Wang, Ruijia Wang, Shuyue Wang, Mengran Zhang, Xiaoli Ma, Pingping Liu, Meiwei Zhang, Xiaoli Hu, Lingling Zhang, Shi Wang, Zhenmin Bao

Fish & Shellfish Immunology

DOI

2015

Genome-wide identification and characterization of five MyD88 duplication genes in Yesso scallop (Patinopecten yessoensis) and expression changes in response to bacterial challenge

Xianhui Ning, Ruijia Wang, Xue Li, Shuyue Wang, Mengran Zhang, Qiang Xing, Yan Sun, Shi Wang, Lingling Zhang, Xiaoli Hu, Zhenmin Bao

Fish & Shellfish Immunology

DOI

2015

The genome-wide identification of mitogen-activated protein kinase kinase (MKK) genes in Yesso scallop Patinopecten yessoensis and their expression responses to bacteria challenges

Jiajun Zou, Ruijia Wang, Ruojiao Li, Yifan Kong, Jing Wang, Xianhui Ning, Lingling Zhang, Shi Wang, Xiaoli Hu, Zhenmin Bao

Fish & Shellfish Immunology

DOI

2015

Integration of Transcriptomic and Proteomic Approaches Provides a Core Set of Genes for Understanding of Scallop Attachment

Yan Miao, Lingling Zhang, Yan Sun, Wenqian Jiao, Yangping Li, Jin Sun, Yangfan Wang, Shi Wang, Zhenmin Bao, Weizhi Liu

Marine Biotechnology

DOI

2015

Genomic in situ hybridization identifies parental chromosomes in hybrid scallop (Bivalvia, Pectinoida, Pectinidae) between female Chlamys farreri and male Argopecten irradians irradians

Lingling Zhang, Xiaoting Huang, Ke Bi, Wei Lu, Shi Wang, Zhenmin Bao

Comparative Cytogenetics

DOI

2015

Characterizations and expression analyses of NF-κB and Rel genes in the Yesso scallop (Patinopecten yessoensis) suggest specific response patterns against Gram-negative infection in bivalves

Ruojiao Li, Ru Zhang, Lu Zhang, Jiajun Zou, Qiang Xing, Huaiqian Dou, Xiaoli Hu, Lingling Zhang, Ruijia Wang, Zhenmin Bao

Fish & Shellfish Immunology

DOI

2015

Identification, characterization and expression profiling of the Tollip gene in Yesso scallop (Patinopecten yessoensis)

Ru Zhang, Ruojiao Li, Jing Wang, Shuyue Wang, Mengran Zhang, Xiaoli Hu, Lingling Zhang, Shi Wang, Ruijia Wang, Zhenmin Bao

Genes & Genetic Systems

DOI

2014

An Integrated Genetic and Cytogenetic Map for Zhikong Scallop, Chlamys farreri, Based on Microsatellite Markers

Liying Feng, Liping Hu, Xiaoteng Fu, Huan Liao, Xuan Li, Aibin Zhan, Lingling Zhang, Shi Wang, Xiaoting Huang, Zhenmin Bao

PLoS ONE

DOI

2014

A Scallop IGF Binding Protein Gene: Molecular Characterization and Association of Variants with Growth Traits

Liying Feng, Xue Li, Qian Yu, Xianhui Ning, Jinzhuang Dou, Jiajun Zou, Lingling Zhang, Shi Wang, Xiaoli Hu, Zhenmin Bao

PLoS ONE

DOI

2014

Genome-Wide Analysis of DNA Methylation in Five Tissues of Zhikong Scallop, Chlamys farreri

Yan Sun, Rui Hou, Xiaoteng Fu, Changsen Sun, Shi Wang, Chen Wang, Ning Li, Lingling Zhang, Zhenmin Bao

PLoS ONE

DOI

2014

Identification of two secreted ferritin subunits involved in immune defense of Yesso scallop Patinopecten yessoensis

Yan Sun, Yueyue Zhang, Xiaoteng Fu, Ru Zhang, Jiajun Zou, Shi Wang, Xiaoli Hu, Lingling Zhang, Zhenmin Bao

Fish & Shellfish Immunology

DOI

2013

Development of an in situ loop-mediated isothermal amplification technique for chromosomal localization of DNA sequences

Qinglei Meng, Wang Shi, Lingling Zhang, Xiaoting Huang, Zhenmin Bao

Chinese Journal of Oceanology and Limnology

DOI

2013

扇贝科染色体研究进展

胡丽萍，黄晓婷，张玲玲，陆维，包振民

《海洋科学》

2013

Molecular cloning and characterization of SoxB2 gene from Zhikong scallop Chlamys farreri

贺艳，包振民，郭慧慧，张月月，张玲玲，王师，胡景杰，胡晓丽

Journal of Oceanology and Limnology

2013

Proteomic analysis identifies proteins related to carotenoid accumulation in Yesso scallop (Patinopecten yessoensis)

Yueyue Zhang, Lingling Zhang, Jin Sun, Jian‐Wen Qiu, Xiaoli Hu, Jingjie Hu, Zhenmin Bao

Food Chemistry

DOI

2013

Molecular Characterization of RXR (Retinoid X Receptor) Gene Isoforms from the Bivalve Species Chlamys farreri

Jia Lv, Liying Feng, Zhenmin Bao, Huihui� Guo, Yueyue Zhang, Wenqian Jiao, Lingling Zhang, Shi Wang, Yan He, Xiaoli Hu

PLoS ONE

DOI

2013

Development of a Rapid and Efficient Method for Non-Lethal DNA Sampling and Genotyping in Scallops

Junxia Mao, Jia Lv, Yan Miao, Changsen Sun, Liping Hu, Ru Zhang, Xiaoteng Fu, Lingling Zhang, Xiaoli Hu, Shi Wang, Zhenmin Bao

PLoS ONE

DOI

2013

Identification and characterization of four ferritin subunits involved in immune defense of the Yesso scallop (Patinopecten yessoensis)

Yueyue Zhang, Ru Zhang, Jiajun Zou, Xiaoli Hu, Shi Wang, Lingling Zhang, Zhenmin Bao

Fish & Shellfish Immunology

DOI

2013

Transcriptome Sequencing of Zhikong Scallop (Chlamys farreri) and Comparative Transcriptomic Analysis with Yesso Scallop (Patinopecten yessoensis)

Shan Wang, Rui Hou, Zhenmin Bao, Huixia Du, Yan He, Hailin Su, Yueyue Zhang, Xiaoteng Fu, Wenqian Jiao, Yan Li, Lingling Zhang, Shi Wang, Xiaoli Hu

PLoS ONE

DOI

2012

Identification of Cytochrome P450 (CYP) genes in Zhikong scallop (Chlamys farreri)

Huihui� Guo, Zhenmin Bao, Huixia Du, Lingling Zhang, Shi Wang, Luyang Sun, Xiaoyu Mou, Xiaoli Hu

Journal of Ocean University of China

DOI

2012

Molecular Characterization of TGF-β Type I Receptor Gene (Tgfbr1) in Chlamys farreri, and the Association of Allelic Variants with Growth Traits

Huihui� Guo, Zhenmin Bao, Jiqin Li, Shanshan Lian, Shi Wang, Yan He, Xiaoteng Fu, Lingling Zhang, Xiaoli Hu

PLoS ONE

DOI

2012

Characterization of 62 polymorphic EST-SSR markers in the blood clam (Tegillarca granosa) and their cross-amplification in Scapharca subcrenata

Yinghui Dong, Hanhan Yao, Zhihua Lin, Lingling Zhang, Zhenmin Bao

Conservation Genetics Resources

DOI

2012

Reference-free SNP calling: improved accuracy by preventing incorrect calls from repetitive genomic regions

Jinzhuang Dou, Xiqiang Zhao, Xiaoteng Fu, Wenqian Jiao, Nannan Wang, Lingling Zhang, Xiaoli Hu, Shi Wang, Zhenmin Bao

Biology Direct

DOI

2012

Network Analysis of Oyster Transcriptome Revealed a Cascade of Cellular Responses during Recovery after Heat Shock

Lingling Zhang, Rui Hou, Hailin Su, Xiaoli Hu, Shi Wang, Zhenmin Bao

PLoS ONE

DOI

2012

Characterization of 38 EST-derived SNP markers in Zhikong scallop (Chlamys farreri) and their cross-species utility in Yesso scallop (Patinopecten yessoensis)

Xiaojian Wang, Xiaoli Hu, Jiqin Li, Ling Li, Rui Hou, Shi Wang, Lingling Zhang, Zhenmin Bao

Conservation Genetics Resources

DOI

2011

Development of 44 gene-based SNP markers in Zhikong scallop, Chlamys farreri

Guodong Jiang, Jiqin Li, Ling Li, Lingling Zhang, Zhenmin Bao

Conservation Genetics Resources

DOI

2010

Molecular and cellular evidence for biased mitotic gene conversion in hybrid scallop

Shi Wang, Lingling Zhang, Jingjie Hu, Zhenmin Bao, Zhanjiang Liu

BMC Evolutionary Biology

DOI

2008

Initial analysis of tandemly repetitive sequences in the genome of Zhikong scallop (Chlamys farreriJones et Preston)

Lingling Zhang, Lingling Zhang, Chao Chen, Lingling Zhang, Chao Chen, Jie Cheng, Lingling Zhang, Chao Chen, Jie Cheng, Shi Wang, Lingling Zhang, Chao Chen, Jie Cheng, Shi Wang, Xiaoli Hu, Lingling Zhang, Chao Chen, Jie Cheng, Shi Wang, Xiaoli Hu, Jingjie Hu, Lingling Zhang, Chao Chen, Jie Cheng, Shi Wang, Xiaoli Hu, Jingjie Hu, Zhenmin Bao, Lingling Zhang, Chao Chen, Jie Cheng, Shi Wang, Xiaoli Hu, Jingjie Hu, Zhenmin Bao

DNA sequence

DOI

2007

Patterns of Concerted Evolution of the rDNA Family in a Natural Population of Zhikong Scallop, Chlamys farreri

Shi Wang, Lingling Zhang, Aibin Zhan, Xiaolong Wang, Zhanjiang Liu, Jingjie Hu, Zhenmin Bao

Journal of Molecular Evolution

DOI

2007

FISH Mapping and Identification of Zhikong Scallop (Chlamys farreri) Chromosomes

Lingling Zhang, Zhenmin Bao, Shi Wang, Xiaoli Hu, Jingjie Hu

Marine Biotechnology

DOI

2007

Two novel elements (CFG1 and PYG1) of Mag lineage of Ty3/Gypsy retrotransposons from Zhikong scallop (Chlamys farreri) and Japanese scallop (Patinopecten yessoensis)

Shi Wang, Zhenmin Bao, Xiaoli Hu, Mingyu Shao, Lingling Zhang, Jingjie Hu

Genetica

DOI

2007

Fosmid Library Construction and Initial Analysis of End Sequences in Zhikong Scallop (Chlamys farreri)

Lingling Zhang, Zhenmin Bao, Jie Cheng, Hui Li, Xiaoting Huang, Shi Wang, Can Zhang, Jingjie Hu

Marine Biotechnology

DOI

2007

Analysis of the Secondary Structure of ITS1 in Pectinidae: Implications for Phylogenetic Reconstruction and Structural Evolution

Shi Wang, Zhenmin Bao, Ning Li, Lingling Zhang, Jingjie Hu

Marine Biotechnology

DOI

2007

Cytogenetic characterization of the bay scallop, Argopecten irradians irradians, by multiple staining techniques and fluorescence in situ hybridization

Xiaoting Huang, Jingjie Hu, Xiaoli Hu, Can Zhang, Lingling Zhang, Shi Wang, Wei Lu, Zhenmin Bao

Genes & Genetic Systems

DOI

2006

Cloning and characterization of tryptophan 2,3-dioxygenase gene of Zhikong scallop Chlamys farreri (Jones and Preston 1904)

Xiaoli Hu, Zhenmin Bao, Jingjie Hu, Mingyu Shao, Lingling Zhang, Ke Bi, Aibin Zhan, Xiaoting Huang

Aquaculture Research

DOI

2006

Chromosome rearrangements in Pectinidae (Bivalvia: Pteriomorphia) implied based on chromosomal localization of histone H3 gene in four scallops

Lingling Zhang, Zhenmin Bao, Shi Wang, Xiaoting Huang, Jingjie Hu

Genetica

DOI

预印本

2018

HD-Marker: a highly multiplexed and flexible approach for targeted genotyping of more than 10,000 genes in a single-tube assay

Jia Lv, Wenqian Jiao, Haobing Guo, Pingping Liu, Ruijia Wang, Lingling Zhang, Qifan Zeng, Xiaoli Hu, Zhenmin Bao, Shi Wang

Genome Research

DOI

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