百晓学者学者目录

文波

研究员、讲师，复旦大学

精选作品

期刊论文

2025

Proteomic-based stemness score measures oncogenic dedifferentiation and enables the identification of druggable targets

Iga Kołodziejczak-Guglas, Renan L. S. Simões, Emerson de Souza Santos, E. G. Demicco, Rossana N. Lazcano Segura, Weiping Ma, Pei Wang, Yifat Geffen, E. Storrs, F. Petralia, A. Colaprico, Felipe da Veiga Leprevost, Pietro Pugliese, M. Ceccarelli, H. Noushmehr, Alexey I. Nesvizhskii, Bożena Kamińska, Waldemar Priebe, J. Lubiński, Bing Zhang, A. J. Lazar, Paweł Kurzawa, M. Mesri, Ana I. Robles, Alicia Francis, A. Paulovich, A. Calinawan, A. Iavarone, A. Chinnaiyan, Bo Wen, B. Reva, B. Druker, Caleb M. Lindgren, Chandan Kumar-Sinha, Chelsea J. Newton, Chen Huang, Chet Birger, Corbin Day, D. Mani, D. Zhou, Daniel W. Chan, D. Fenyö, David I. Heiman, D. Rykunov, Emily M. Huntsman, Eric E. Schadt, E. Jaehnig, Eunkyung An, F. M. Rodrigues, F. Aguet, G. Getz, G. Hostetter, Gilbert S. Omenn, Han-Byoul Cho, Hui Zhang, Jared L. Johnson, Jasmin Bavarva, Jia-Yi Ji, Jimin Tan, Jonathan T. Lei, Joshua M. Wang, K. Ketchum, K. Rodland, Karl R. Clauser, Karsten Krug, K. Ruggles, Lewis C. Cantley, Liang-Bo Wang, Li-Jun Yao, L. Katsnelson, M. Domagalski, Marcin Cieslik, Mathangi Thiagarajan, M. Wyczalkowski, Matthew J. C. Ellis, M. Anurag, M. Gillette, Michael J. Birrer, M. Schnaubelt, M. Selvan, Nadezhda V. Terekhanova, Nathan Edwards, N. Tignor, Ö. Babur, Qing Zhang, Ratna R. Thangudu, Richard D. Smith, R. Oldroyd, Run-Yu Hong, Samuel H. Payne, Sara J. C. Gosline, Sara R. Savage, S. Dhanasekaran, S. Jewell, Shankara K. Anand, Shankha Satpathy, Shrabanti Chowdhury, Song Cao, S. Schürer, Steven A. Carr, S. Foltz, Tania J. González-Robles, Tao Liu, Tobias Schraink, T. Yaron, Vasileios Stathias, Wen Jiang, Wen-Wei Liang, Wen-Ke Liu, Wilson H. McKerrow, Xiao-Yu Song, Xin-Pei Yi, Xu Zhang, Yi-Ge Wu, Ying Wang, Ying-Wei Hu, Yi-Ze Li, Yi-Zhe Song, Y. Akiyama, Yong-Chao Dou, Yu-Xing Liao, Z. Gümüş, Zhen Zhang, Zhiao Shi, Li Ding, T. Malta, M. Wiznerowicz

Cell Genomics

DOI

2024

Pan-cancer proteogenomics expands the landscape of therapeutic targets

Sara R. Savage, Xin-Pei Yi, Jonathan T. Lei, Bo Wen, Hong-Wei Zhao, Yu-Xing Liao, E. Jaehnig, Lauren K. Somes, P. Shafer, Tobie D. Lee, Zile Fu, Yong-Chao Dou, Zhiao Shi, Da-Ming Gao, V. Hoyos, Qiang Gao, Bing Zhang

Cell

DOI

2024

Analysis of blood methylation quantitative trait loci in East Asians reveals ancestry-specific impacts on complex traits

Qianqian Peng, Xinxuan Liu, Wenran Li, Han Jing, Jiarui Li, Xingjian Gao, Qi Luo, Charles E. Breeze, Siyu Pan, Qiwen Zheng, Guochao Li, Jiaqiang Qian, Liyun Yuan, Na Yuan, Chenglong You, Siyuan Du, Yuanting Zheng, Ziyu Yuan, Jingze Tan, Peilin Jia, Jiucun Wang, Guoqing Zhang, Xianping Lu, Leming M. Shi, Shicheng Guo, Yun Liu, Ting Ni, Bo Wen, Changqing Zeng, Jin Li, Andrew Erich Teschendorff, Fan Liu, Sijia Wang

Nature Genetics

DOI

2023

PepQuery2 democratizes public MS proteomics data for rapid peptide searching

Bo Wen, Bing Zhang

Nature Communications

DOI

2023

Deep Learning Prediction Boosts Phosphoproteomics-Based Discoveries Through Improved Phosphopeptide Identification

Xin-Pei Yi, Bo Wen, Shuyi Ji, Alexander B. Saltzman, E. Jaehnig, Jonathan T. Lei, Qiang Gao, Bing Zhang

Molecular & Cellular Proteomics

DOI

2023

Proteogenomic insights suggest druggable pathways in endometrial carcinoma

Yong-Chao Dou, L. Katsnelson, M. Gritsenko, Ying-Wei Hu, B. Reva, Run-Yu Hong, Yi-Ting Wang, Iga Kołodziejczak, Rita Jui-Hsien Lu, Chia-Feng Tsai, W. Bu, Wen-Ke Liu, Xiao-Fang Guo, E. An, R. Arend, Jasmin Bavarva, Li-Jun Chen, Rosalie K. Chu, Andrzej Czekański, T. Davoli, Elizabeth G. Demicco, D. DeLair, K. Devereaux, S. Dhanasekaran, P. Dottino, Bailee Dover, T. Fillmore, M. Foxall, Catherine E. Hermann, T. Hiltke, G. Hostetter, Marcin Jędryka, S. Jewell, Isabella Johnson, Andrea G. Kahn, A. Ku, Chandan Kumar-Sinha, Paweł Kurzawa, A. Lazar, Rossana N. Lazcano, Jonathan T. Lei, Yi Li, Yu-Xing Liao, T. Lih, Tai-Tu Lin, J. Martignetti, R. Masand, R. Matkowski, Wilson H. McKerrow, M. Mesri, Matthew E. Monroe, Jamie Moon, Ronald J. Moore, Mike Nestor, Chelsea J. Newton, T. Omelchenko, G. Omenn, S. Payne, V. Petyuk, Ana I. Robles, Henry Rodriguez, K. Ruggles, D. Rykunov, Sara R. Savage, A. Schepmoes, Tu-Jin Shi, Zhiao Shi, Jimin Tan, Mason D. Taylor, Mathangi Thiagarajan, Joshua M. Wang, K. Weitz, Bo Wen, C. Williams, Yi-Ge Wu, M. Wyczalkowski, Xin-Pei Yi, Xu Zhang, Rui Zhao, D. Mutch, A. Chinnaiyan, Richard D. Smith, A. Nesvizhskii, Pei Wang, M. Wiznerowicz, Li Ding, D. Mani, Hui Zhang, M. Anderson, K. Rodland, Bing Zhang, Tao Liu, D. Fenyö, Andrzej Antczak, M. Anurag, Thomas L. Bauer, Chet Birger, Michael J. Birrer, M. Borucki, Shuang Cai, A. Calinawan, Steven A. Carr, Patricia D. Castro, Sandra R. Cerda, Daniel W. Chan, D. Chesla, Marcin Cieslik, S. Cottingham, R. Dhir, M. Domagalski, B. Druker, Elizabeth Duffy, Nathan Edwards, Robin H. Edwards, Matthew J. C. Ellis, Jennifer Eschbacher, M. Fam, Brenda Fevrier-Sullivan, Jesse Francis, J. Freymann, S. Gabriel, Gad Getz, M. Gillette, Andrew K. Godwin, C. Goldthwaite, Pamela Grady, J. Hafron, P. Hariharan, B. Hindenach, K. Hoadley, Jasmin Huang, M. Ittmann, Ashlie Johnson, Corbin D. Jones, K. Ketchum, J. Kirby, Toan Le, Avi Ma'ayan, R. Madan, Sailaja Mareedu, P. McGarvey, F. Modugno, Rebecca S. Montgomery, K. Nyce, A. Paulovich, B. Pruetz, L. Qi, S. Richey, Eric E. Schadt, Y. Shutack, Shilpi Singh, Michael E. Smith, Darlene Tansil, Ratna R. Thangudu, Matt Tobin, K. S. Um, Negin Vatanian, A. Webster, G. Wilson, Jay Wright, Kakhaber Zaalishvili, Zhen Zhang, Grace Zhao

Cancer Cell

DOI

2023

Proteogenomic Data and Resources for Pan-Cancer Analysis

Yi-Ze Li, Yong-Chao Dou, Felipe da Veiga Leprevost, Yifat Geffen, A. Calinawan, F. Aguet, Y. Akiyama, Shankara K. Anand, Chet Birger, Song Cao, Rekha Chaudhary, Padmini Chilappagari, M. Cieslik, A. Colaprico, D. Zhou, Corbin Day, M. Domagalski, Myvizhi Esai Selvan, D. Fenyö, S. Foltz, Alicia Francis, Tania J. González-Robles, Z. Gümüş, David I. Heiman, M. Holck, Run-Yu Hong, Ying-Wei Hu, E. Jaehnig, Jiayi Ji, Wen Jiang, L. Katsnelson, K. Ketchum, R. Klein, Jonathan T. Lei, Wen-Wei Liang, Yu-Xing Liao, Caleb M. Lindgren, Weiping Ma, Lei Ma, M. MacCoss, Fernanda Martins Rodrigues, Wilson H. McKerrow, Ngoc Nguyen, R. Oldroyd, Alexander R Pilozzi, Pietro Pugliese, B. Reva, P. Rudnick, K. Ruggles, D. Rykunov, Sara R. Savage, M. Schnaubelt, Tobias Schraink, Zhiao Shi, Deepak Singhal, Xiao-Yu Song, E. Storrs, Nadezhda V. Terekhanova, Ratna R. Thangudu, Mathangi Thiagarajan, Liang-Bo Wang, Joshua M. Wang, Ying Wang, Bo Wen, Yi-Ge Wu, M. Wyczalkowski, Yi Xin, L. Yao, Xin-Pei Yi, Hui Zhang, Qing Zhang, Maya Zuhl, G. Getz, Li Ding, A. Nesvizhskii, Pei Wang, Ana I. Robles, Bing Zhang, S. Payne

Cancer Cell

DOI

2023

Abstract 5726: Pan-cancer proteogenomics expands the landscape of therapeutic targets

Jonathan T. Lei, Sara R. Savage, Xin-Pei Yi, Bo Wen, Hongwei Zhao, Lauren K. Somes, P. Shafer, Yong-Chao Dou, Qiang Gao, V. Hoyos, Bing Zhang

Cancer Research

DOI

2023

Deep learning integrates histopathology and proteogenomics at a pan-cancer level

Joshua M. Wang, Run-Yu Hong, Elizabeth G. Demicco, Jimin Tan, Rossana N. Lazcano, A. Moreira, Yi-Ze Li, A. Calinawan, N. Razavian, Tobias Schraink, M. Gillette, G. Omenn, E. An, Henry Rodriguez, A. Tsirigos, K. Ruggles, Li Ding, Ana I. Robles, D. Mani, K. Rodland, A. Lazar, Wen-Ke Liu, D. Fenyö, F. Aguet, Y. Akiyama, Shankara K. Anand, M. Anurag, Ö. Babur, Jasmin Bavarva, Chet Birger, M. Birrer, L. Cantley, Song Cao, Steve Carr, M. Ceccarelli, Daniel W. Chan, A. Chinnaiyan, Han-Byoul Cho, Shrabanti Chowdhury, M. Cieslik, K. Clauser, A. Colaprico, D. Zhou, Felipe da Veiga Leprevost, Corbin Day, S. Dhanasekaran, M. Domagalski, Yong-Chao Dou, B. Druker, Nathan Edwards, M. Ellis, M. Selvan, S. Foltz, Alicia Francis, Yifat Geffen, G. Getz, Tania J. González-Robles, Sara J. C. Gosline, Z. Gümüş, David I. Heiman, T. Hiltke, G. Hostetter, Ying-Wei Hu, Chen Huang, Emily M. Huntsman, A. Iavarone, E. Jaehnig, S. Jewell, Jiayi Ji, Wen Jiang, Jared L. Johnson, L. Katsnelson, K. Ketchum, Iga Kołodziejczak, Karsten Krug, Chandan Kumar-Sinha, Jonathan T. Lei, Wen-Wei Liang, Yu-Xing Liao, Caleb M. Lindgren, T. Liu, Weiping Ma, F. M. Rodrigues, Wilson H. McKerrow, A. Nesvizhskii, Chelsea J. Newton, R. Oldroyd, A. Paulovich, S. Payne, F. Petralia, Pietro Pugliese, B. Reva, D. Rykunov, Shankha Satpathy, Sara R. Savage, E. Schadt, M. Schnaubelt, S. Schürer, Zhiao Shi, Richard D. Smith, Xiaoyu Song, Yi-Zhe Song, Vasileios Stathias, E. Storrs, Nadezhda V. Terekhanova, Ratna R. Thangudu, Mathangi Thiagarajan, N. Tignor, Liang-Bo Wang, Peisen Wang, Ying Wang, Bo Wen, M. Wiznerowicz, Yi-Ge Wu, M. Wyczalkowski, L. Yao, T. Yaron, Xin-Pei Yi, Bing Zhang, Hui Zhang, Qing Zhang, Xu Zhang, Zhen Zhang

Cell Reports Medicine

DOI

2023

Abstract P2-23-01: Patient-derived xenografts allow deconvolution of single agent and combination chemotherapy responses in triple-negative breast cancer

Jonathan T. Lei, Chen Huang, R. Srinivasan, S. Vasaikar, L. Dobrolecki, Alaina Lewis, Na Zhao, Jin Cao, S. Hilsenbeck, C. Osborne, M. Rimawi, M. Ellis, V. Petrosyan, Alexander B. Saltzman, A. Malovannaya, John D. Landua, Bo Wen, Antrix Jain, G. Wulf, Shun-Qiang Li, D. Kraushaar, Tao Wang, Xi Chen, G. Echeverria, M. Anurag, Bing Zhang, M. Lewis

Cancer Research

DOI

2023

The Lysine Demethylase KDM7A Regulates Immediate Early Genes in Neurons

Yifan Wang, Qin Hong, Yueyue Xia, Zhao Zhang, Bo Wen

Advanced Science

DOI

2023

MATR3‐antisense LINE1 RNA meshwork scaffolds higher‐order chromatin organization

Yuwen Zhang, Xuan Duc Cao, Zehua Gao, Xuying Ma, Qianfeng Wang, Xiaoxuan Xu, Xiumei Cai, Yan Zhang, Zhao Zhang, Gang Wei, Bo Wen

EMBO Reports

DOI

2022

跨学科思路下人体分子与细胞整合课程的全面建设

王丽影，文波，张艳，杨玲，郭峰，刘雯，汤其群

《基础医学教育》

2022

Proteogenomic markers of chemotherapy resistance and response in triple negative breast cancer

M. Anurag, E. Jaehnig, Karsten Krug, Jonathan T. Lei, Erik J. Bergstrom, Beom-Jun Kim, Tanmayi D Vashist, A. M. Tran Huynh, Yong-Chao Dou, X. Gou, Chen Huang, Zhiao Shi, Bo Wen, V. Korchina, R. Gibbs, D. Muzny, H. Doddapaneni, L. Dobrolecki, Henry Rodriguez, A. Robles, T. Hiltke, M. Lewis, J. Nangia, Maryam Nemati Shafaee, Shun-Qiang Li, I. Hagemann, J. Hoog, Bora Lim, C. Osborne, D. Mani, M. Gillette, Bing Zhang, G. Echeverria, George Miles, M. Rimawi, Steve Carr, F. Ademuyiwa, Shankha Satpathy, M. Ellis

Cancer Discovery

DOI

2021

Abstract 1895: caAtlas: An immunopeptidome atlas of human cancer

Xin-Pei Yi, Yu-Xing Liao, Bo Wen, Kai Li, Yong-Chao Dou, Sara R. Savage, Bing Zhang

Immunology

DOI

2021

A proteogenomic portrait of lung squamous cell carcinoma

Shankha Satpathy, Karsten Krug, Pierre M. Jean Beltran, Sara R. Savage, F. Petralia, Chandan Kumar-Sinha, Yong-Chao Dou, B. Reva, M. H. Kane, S. Avanessian, S. Vasaikar, A. Krek, Jonathan T. Lei, E. Jaehnig, T. Omelchenko, Yifat Geffen, Erik J. Bergstrom, Vasileios Stathias, K. E. Christianson, David I. Heiman, M. Cieslik, Song Cao, Xiaoyu Song, Jiayi Ji, Wen-Ke Liu, Kai Li, Bo Wen, Yi-Ze Li, Z. Gümüş, M. Selvan, R. Soundararajan, T. Visal, M. G. Raso, E. Parra, Ö. Babur, P. Vats, Shankara K. Anand, Tobias Schraink, M. Cornwell, F. M. Rodrigues, Houxiang Zhu, Chia-Kuei Mo, Yu-Ping Zhang, Felipe da Veiga Leprevost, Chen Huang, A. Chinnaiyan, M. Wyczalkowski, G. Omenn, Chelsea J. Newton, S. Schürer, K. Ruggles, D. Fenyö, S. Jewell, Mathangi Thiagarajan, M. Mesri, H. Rodriguez, Sendurai A Mani, Namrata D. Udeshi, G. Getz, J. Suh, Q. K. Li, G. Hostetter, P. Paik, S. Dhanasekaran, R. Govindan, Li Ding, A. Robles, K. Clauser, A. Nesvizhskii, Pei Wang, Steve Carr, Bing Zhang, D. Mani, M. Gillette

Cell

DOI

2021

Proteogenomic Characterization of Pancreatic Ductal Adenocarcinoma

L. Cao, Chen Huang, Daniel Cui Zhou, Ying-Wei Hu, T. Lih, Sara R. Savage, Karsten Krug, David J. Clark, M. Schnaubelt, Li-Jun Chen, Felipe da Veiga Leprevost, R. V. Eguez, Wei-Ming Yang, Jianbo Pan, Bo Wen, Yong-Chao Dou, Wen Jiang, Yu-Xing Liao, Zhiao Shi, Nadezhda V. Terekhanova, Song Cao, Rita Jui-Hsien Lu, Yi-Ze Li, Ruiyang Liu, Houxiang Zhu, Peter Ronning, Yi-Ge Wu, M. Wyczalkowski, H. Easwaran, L. Danilova, A. Mer, S. Yoo, Joshua M. Wang, Wen-Ke Liu, B. Haibe-Kains, Mathangi Thiagarajan, S. Jewell, G. Hostetter, Chelsea J. Newton, Q. K. Li, M. Roehrl, D. Fenyö, Pei Wang, A. Nesvizhskii, D. Mani, G. Omenn, Emily Boja, M. Mesri, A. Robles, H. Rodriguez, O. Bathe, D. Chan, R. Hruban, L. Ding, Bing Zhang, Hui Zhang

Cell

DOI

2021

Deep-Learning-Derived Evaluation Metrics Enable Effective Benchmarking of Computational Tools for Phosphopeptide Identification

Wen Jiang, Bo Wen, Kai Li, Wen-feng Zeng, Felipe da Veiga Leprevost, Jamie Moon, V. Petyuk, Nathan J. Edwards, Tao Liu, A. Nesvizhskii, Bing Zhang

Molecular & Cellular Proteomics

DOI

2021

Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma

Chen Huang, Li-Jun Chen, Sara R. Savage, R. V. Eguez, Yong-Chao Dou, Yi-Ze Li, Felipe da Veiga Leprevost, E. Jaehnig, Jonathan T. Lei, Bo Wen, M. Schnaubelt, Karsten Krug, Xiaoyu Song, M. Cieslik, Hui-Yin Chang, M. Wyczalkowski, Kai Li, A. Colaprico, Q. K. Li, David J. Clark, Ying-Wei Hu, Liwei Cao, Jianbo Pan, Yuefan Wang, Kyung-Cho Cho, Zhiao Shi, Yu-Xing Liao, Wen Jiang, M. Anurag, Jia-Yi Ji, S. Yoo, D. Zhou, Wen-Wei Liang, M. Wendl, P. Vats, S. Carr, D. Mani, Zhen Zhang, Jiang Qian, Xi Chen, A. Pico, Pei Wang, A. Chinnaiyan, K. Ketchum, C. Kinsinger, A. Robles, E. An, T. Hiltke, M. Mesri, Mathangi Thiagarajan, Alissa M. Weaver, A. Sikora, J. Lubiński, M. Wierzbicka, M. Wiznerowicz, Shankha Satpathy, M. Gillette, George Miles, M. Ellis, G. Omenn, H. Rodriguez, Emily Boja, S. Dhanasekaran, L. Ding, A. Nesvizhskii, A. El-Naggar, D. Chan, Hui Zhang, Bing Zhang

Cancer Cell

DOI

2021

A community effort to identify and correct mislabeled samples in proteogenomic studies

S. Yoo, Zhiao Shi, Bo Wen, S. Kho, Renke Pan, Hanying Feng, Hong Chen, A. Carlsson, P. Edén, Weiping Ma, M. Raymer, Ezekiel J. Maier, Z. Tezak, Elaine Johanson, Denise Hinton, H. Rodriguez, Jun Zhu, Emily Boja, Pei Wang, Bing Zhang

Patterns

DOI

2021

Feature Selection Methods for Protein Biomarker Discovery from Proteomics or Multiomics Data

Zhiao Shi, Bo Wen, Q. Gao, Bing Zhang

Molecular & Cellular Proteomics

DOI

2021

Abstract 3113: Pan-cancer stemness defined by CPTAC proteogenomics guides personalized therapies

M. Wiznerowicz, A. Colaprico, E. Storrs, F. Petralia, Iga Kołodziejczak, Felipe da Veiga Leprevost, Weiping Ma, D. Zhou, Bo Wen, A. Lazar, Pietro Pugliese, M. Ceccarelli, B. Kaminska, J. Lubiński, A. Nesvizhskii, Bing Zhang, H. Rodriguez, Ana I. Robles, M. Mesri

Tumor Biology

DOI

2021

caAtlas: An immunopeptidome atlas of human cancer

Xin-Pei Yi, Yu-Xing Liao, Bo Wen, Kai Li, Yong-Chao Dou, Sara R. Savage, Bing Zhang

iScience

DOI

2021

Function of Proteins Identified as Part of the Nuclear Matrix

Yuwen Zhang, Xiangru Huo, Bo Wen

Encyclopedia of Life Sciences

DOI

2020

Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma

M. Gillette, Shankha Satpathy, Song Cao, S. Dhanasekaran, S. Vasaikar, Karsten Krug, F. Petralia, Yi-Ze Li, Wen-Wei Liang, B. Reva, Azra Krek, Jia-Yi Ji, Xiao-Yu Song, Wen-Ke Liu, Run-Yu Hong, Li-Jun Yao, Lili Blumenberg, Sara R. Savage, M. Wendl, Bo Wen, Kai Li, Lauren C. Tang, Melanie A. MacMullan, S. Avanessian, M. H. Kane, Chelsea J. Newton, MacIntosh Cornwell, Ramani Kothadia, Wei-Ping Ma, S. Yoo, R. Mannan, P. Vats, Chandan Kumar-Sinha, Emily A. Kawaler, T. Omelchenko, A. Colaprico, Yifat Geffen, Yosef E. Maruvka, Felipe da Veiga Leprevost, Maciej Wiznerowicz, Zeynep H. Gümüş, Rajwanth R. Veluswamy, Galen Hostetter, David I. Heiman, M. Wyczalkowski, T. Hiltke, M. Mesri, C. Kinsinger, Emily Boja, Gilbert S. Omenn, A. Chinnaiyan, H. Rodriguez, Qing Li, S. Jewell, Mathangi Thiagarajan, G. Getz, Bing Zhang, David Fenyő, K. Ruggles, Marcin Cieslik, Ana I. Robles, Karl R. Clauser, R. Govindan, Pei Wang, A. Nesvizhskii, L. Ding, D. Mani, S. Carr, A. Webster, Alicia Francis, Alyssa Charamut, A. Paulovich, Amy M. Perou, A. Godwin, Andrii Karnuta, Annette Marrero-Oliveras, B. Hindenach, B. Pruetz, B. Kubisa, B. Druker, Chet Birger, Corbin D. Jones, Dana R. Valley, D. Rohrer, D. Zhou, Daniel W. Chan, D. Chesla, David J. Clark, D. Rykunov, Donghui Tan, Елена Всеволодовна Пономарева, Elizabeth Duffy, Eric J. Burks, Eric E. Schadt, Erik J. Bergstrom, Eugene S. Fedorov, Ewa Malc, G. Wilson, Hai-Quan Chen, Halina M. Krzystek, Hong-Wei Liu, Houston Culpepper, Hua Sun, Hui Zhang, J. Day, J. Suh, Jeffrey R. Whiteaker, Jennifer Eschbacher, John J. McGee, K. Ketchum, Karin D. Rodland, K. Robinson, K. Hoadley, Kei Suzuki, K. S. Um, Kim Elburn, Liang-Bo Wang, Li-Jun Chen, L. Hannick, L. Qi, Lori J. Sokoll, Małgorzata Wojtyś, M. Domagalski, Marina A. Gritsenko, M. Beasley, Matthew E. Monroe, Matthew J. C. Ellis, Maureen A. Dyer, Meghan C. Burke, M. Borucki, Meng-Hong Sun, Michael H. Roehrl, Michael J. Birrer, Michael Noble, Michael Schnaubelt, Michael Vernon, Michelle Chaikin, Mikhail Krotevich, Munziba Khan, M. Selvan, N. Roche, Nathan Edwards, Negin Vatanian, Olga Potapova, Pamela Grady, P. McGarvey, P. Mieczkowski, P. Hariharan, R. Madan, Ratna R. Thangudu, Richard D. Smith, R. Welsh, Robert Zelt, R. Mehra, R. Matteotti, Sailaja Mareedu, Samuel H. Payne, S. Cottingham, Sanford P. Markey, Seema Chugh, Shaleigh A. Smith, S. Tsang, S. Cai, S. Boca, Sonya Carter, S. Gabriel, Stephanie De Young, Stephen E. Stein, Sunita Shankar, Tanya Krubit, Tao Liu, T. Skelly, Thomas L. Bauer, Uma Velvulou, Umut Özbek, Vladislav A. Petyuk, Volodymyr Sovenko, William E. Bocik, William W. Maggio, Xi Chen, Yan Shi, Yi-Ge Wu, Ying-Wei Hu, Yu-Xing Liao, Zhen Zhang, Zhiao Shi

Cell

DOI

2020

Cancer neoantigen prioritization through sensitive and reliable proteogenomics analysis

Bo Wen, Kai Li, Yun Zhang, Bing Zhang

Nature Communications

DOI

2020

Proteogenomic Characterization of Endometrial Carcinoma

Yong-Chao Dou, Emily A. Kawaler, Daniel Cui Zhou, M. Gritsenko, Chen Huang, L. Blumenberg, Alla Karpova, V. Petyuk, Sara R. Savage, Shankha Satpathy, Wen-Ke Liu, Yi-Ge Wu, Chia-Feng Tsai, Bo Wen, Zhi Li, Song Cao, Jamie Moon, Zhiao Shi, M. Cornwell, M. Wyczalkowski, Rosalie K. Chu, S. Vasaikar, Hua Zhou, Qing-Song Gao, Ronald J. Moore, Kai Li, Sunantha Sethuraman, Matthew E. Monroe, Rui Zhao, David I. Heiman, Karsten Krug, K. Clauser, Ramani Kothadia, Y. Maruvka, A. Pico, A. Oliphant, E. Hoskins, Samuel L. Pugh, S. Beecroft, David W. Adams, J. Jarman, Andy T. Kong, Hui-Yin Chang, B. Reva, Yu-Xing Liao, D. Rykunov, A. Colaprico, Xi Chen, Andrzej Czekański, Marcin Jędryka, R. Matkowski, M. Wiznerowicz, T. Hiltke, Emily Boja, C. Kinsinger, M. Mesri, A. Robles, H. Rodriguez, D. Mutch, K. Fuh, M. Ellis, D. DeLair, Mathangi Thiagarajan, D. Mani, G. Getz, M. Noble, A. Nesvizhskii, Pei Wang, M. Anderson, D. Levine, Richard D. Smith, S. Payne, K. Ruggles, K. Rodland, L. Ding, Bing Zhang, Tao Liu, D. Fenyö, A. Agarwal, M. Anurag, D. Avtonomov, Chet Birger, M. Birrer, S. Boca, William Bocik, U. Borate, M. Borucki, Meghan C. Burke, S. Cai, A. Calinawan, Steve Carr, Sonya Carter, Patricia D. Castro, Sandra R. Cerda, Michelle Chaikin, Daniel W. Chan, Doug W. Chan, Alyssa Charamut, F. Chen, Jin Chen, Li-Jun Chen, Lin S. Chen, D. Chesla, M. Chheda, A. Chinnaiyan, Shrabanti Chowdhury, M. Cieslik, David J. Clark, S. Cottingham, Houston W. Culpepper, J. Day, Stephanie De Young, E. Demir, S. Dhanasekaran, R. Dhir, M. Domagalski, P. Dottino, B. Druker, Elizabeth Duffy, Maureen A. Dyer, Nathan J. Edwards, Robert A. Edwards, Kim Elburn, J. Field, Alicia Francis, S. Gabriel, Yifat Geffen, Daniel J. Geiszler, M. Gillette, A. Godwin, Pamela Grady, L. Hannick, P. Hariharan, S. Hilsenbeck, B. Hindenach, K. Hoadley, Run-Yu Hong, G. Hostetter, James J. Hsieh, Ying-Wei Hu, M. Ittmann, E. Jaehnig, S. Jewell, Jiayi Ji, Corbin D. Jones, Renee Karabon, K. Ketchum, Munziba Khan, Beom-Jun Kim, A. Krek, Tanya Krubit, Chandan Kumar-Sinha, F. Leprevost, Michael Lewis, Q. K. Li, Yi-Ze Li, Hongwei Liu, J. Lubiński, Weiping Ma, R. Madan, Ewa P Malc, A. Malovannaya, Sailaja Mareedu, S. Markey, Annette Marrero-Oliveras, J. Martignetti, Jason G. McDermott, P. McGarvey, John J. McGee, P. Mieczkowski, F. Modugno, Rebecca S. Montgomery, Chelsea J. Newton, G. Omenn, A. Paulovich, Amy M. Perou, F. Petralia, P. Piehowski, L. Polonskaya, L. Qi, S. Richey, K. Robinson, N. Roche, D. Rohrer, E. Schadt, M. Schnaubelt, Yan Shi, T. Skelly, L. Sokoll, Xiaoyu Song, S. Stein, J. Suh, Donghui Tan, Darlene Tansil, Guo-Ci Teo, Ratna R. Thangudu, C. Tognon, E. Traer, J. Tyner, K. S. Um, D. Valley, Negin Vatanian, P. Vats, Uma Velvulou, Michael Vernon, Liang-Bo Wang, Ying Wang, A. Webster, Thomas F. Westbrook, D. Wheeler, Jeffrey R. Whiteaker, G. Wilson, Yuriy Zakhartsev, Robert Zelt, Hui Zhang, Yu-Ping Zhang, Zhen Zhang, Grace Zhao

Cell

DOI

2020

Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy

Karsten Krug, E. Jaehnig, Shankha Satpathy, L. Blumenberg, Alla Karpova, M. Anurag, George Miles, Philipp Mertins, Yifat Geffen, Lauren C. Tang, David I. Heiman, Song Cao, Y. Maruvka, Jonathan T. Lei, Chen Huang, Ramani Kothadia, A. Colaprico, Chet Birger, Jarey H. Wang, Yong-Chao Dou, Bo Wen, Zhiao Shi, Yu-Xing Liao, Maciej Wiznerowicz, M. Wyczalkowski, Xi Chen, Jacob J. Kennedy, A. Paulovich, Mathangi Thiagarajan, C. Kinsinger, T. Hiltke, Emily Boja, M. Mesri, A. Robles, H. Rodriguez, Thomas F. Westbrook, L. Ding, Gad Getz, K. Clauser, D. Fenyö, K. Ruggles, Bing Zhang, D. Mani, Steve Carr, M. Ellis, M. Gillette, S. Avanessian, S. Cai, Daniel W. Chan, Xian Chen, Nathan J. Edwards, A. Hoofnagle, M. H. Kane, K. Ketchum, Eric Kuhn, D. Levine, Shun-Qiang Li, D. Liebler, Tao Liu, Jingqin R Luo, S. Madhavan, C. Maher, J. Mcdermott, P. McGarvey, Mauricio Oberti, A. Pandey, S. Payne, D. Ransohoff, Robert C. Rivers, K. Rodland, P. Rudnick, M. Sanders, K. Shaw, Ie-Ming Shih, R. Slebos, Richard D. Smith, Michael Snyder, S. Stein, D. Tabb, Ratna R. Thangudu, Stefani N. Thomas, Yue Wang, F. White, Jeffrey R. Whiteaker, Gordon A. Whiteley, Hui Zhang, Zhen Zhang, Ying-Ming Zhao, Heng-Ying Zhu, L. J. Zimmerman

Cell

DOI

2020

Deep Learning in Proteomics

Bo Wen, Wen-feng Zeng, Yu-Xing Liao, Zhiao Shi, Sara R. Savage, Wen Jiang, Bing Zhang

Proteomics

DOI

2020

DeepRescore: leveraging deep learning to improve peptide identification in immunopeptidomics

Kai Li, Antrix Jain, A. Malovannaya, Bo Wen, Bing Zhang

Proteomics

DOI

2020

Abstract 5118: Proteogenomics characterization of HPV-negative head and neck squamous cell carcinomas

Chen Huang, Li-Jun Chen, Yi-Ze Li, Sara R. Savage, M. Schnaubelt, F. Leprevost, M. Cieslik, Yong-Chao Dou, Bo Wen, Jonathan T. Lei, Kai Li, E. Jaehnig, Zhiao Shi, M. Anurag, Jianbo Pan, Ying-Wei Hu, R. V. Eguez, David J. Clark, M. Wyczalkowski, S. Dhanasekaran, C. Kumar, A. Colaprico, Karsten Krug, M. Gillette, D. Mani, S. Yoo, Jia-Yi Ji, Xiaoyu Song, Weiping Ma, Xi Chen, A. Picó, Nathan J. Edwards, S. Jewell, Mathangi Thiagarajan, Emily Boja, H. Rodriguez, A. Sikora, Pei Wang, M. Ellis, G. Omenn, L. Ding, A. Nesvizhskii, A. EI-Naggar, D. Chan, Hui Zhang, Bing Zhang

Clinical research

DOI

2020

Computational Proteomics: Focus on Deep Learning

Bo Wen, Bing Zhang

Proteomics

DOI

2020

Abstract GS2-05: Microscaled proteogenomic methods for precision oncology

Shankha Satpathy, E. Jaehnig, Krug Karsten, Beom-Jun Kim, Alexander B. Saltzman, Doug W. Chan, Kimberly R. Holloway, M. Anurag, Chen Huang, Purba Singh, A. Gao, Noel Namai, Yong-Chao Dou, Bo Wen, S. Vasaikar, D. Mutch, M. Watson, Cynthia X. Ma, F. Ademuyiwa, M. Rimawi, J. Hoog, S. Jacobs, A. Malovannaya, T. Hyslop, D. Mani, C. Perou, George Miles, Bing Zhang, M. Gillette, S. Carr, M. Ellis

General Session Abstracts

DOI

2020

A long non-coding RNA specifically expressed in early embryos programs the metabolic balance in adult mice

Minzhe Zhu, Qianfeng Wang, Pengxiang Tian, Lü Cheng, Zihao Sun, Qin Hong, Pin Lv, Luzhang Ji, Yang Liu, Qi‐Qun Tang, Bo Wen

Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease

DOI

2020

The nuclear bodies formed by histone demethylase KDM7A

Hui Ming, Qianfeng Wang, Yuwen Zhang, Luzhang Ji, Lü Cheng, Xiangru Huo, Zixiang Yan, Zhexiao Liu, Yongjun Dang, Bo Wen

Protein & Cell

DOI

2020

G9a/GLP-Sensitivity of H3K9me2 Demarcates Two Types of Genomic Compartments

Zixiang Yan, Luzhang Ji, Xiangru Huo, Qianfeng Wang, Yuwen Zhang, Bo Wen

Genomics Proteomics & Bioinformatics

DOI

2020

TOPORS, a tumor suppressor protein, contributes to the maintenance of higher-order chromatin architecture

Luzhang Ji, Xiangru Huo, Yuwen Zhang, Zixiang Yan, Qianfeng Wang, Bo Wen

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms

DOI

2019

Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma.

Qiang Gao, Hong-Wen Zhu, Liang-Qing Dong, Wei Shi, Ran Chen, Zhijian Song, Cheng Huang, Junqiang Li, Xiaowei Dong, Yan-Ting Zhou, Qian Liu, Lijie Ma, Xiao-Ying Wang, Jian Zhou, Yan-Sheng Liu, Emily Boja, Ana I. Robles, Weiping Ma, Pei Wang, Yi-Ze Li, L. Ding, Bo Wen, Bing Zhang, Henry Rodriguez, Daming Gao, Hu Zhou, Jia Fan

Cell

DOI

2019

Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities

S. Vasaikar, Chen Huang, Xiaojing Wang, V. Petyuk, Sara R. Savage, Bo Wen, Yong-Chao Dou, Yun Zhang, Zhiao Shi, O. A. Arshad, M. Gritsenko, L. J. Zimmerman, Jason E. McDermott, T. Clauss, Ronald J. Moore, Rui Zhao, Matthew E. Monroe, Yi-Ting Wang, M. Chambers, R. Slebos, Ken S. Lau, Q. Mo, L. Ding, M. Ellis, Mathangi Thiagarajan, C. Kinsinger, H. Rodriguez, Richard D. Smith, K. Rodland, D. Liebler, Tao Liu, Bing Zhang, Akhilesh Pandey, A. Paulovich, A. Hoofnagle, D. Mani, Daniel W. Chan, D. Ransohoff, David Fenyő, David L. Tabb, D. Levine, Emily Boja, Eric Kuhn, F. White, Gordon A. Whiteley, Heng Zhu, Hui Zhang, Ie-Ming Shih, Jasmin Bavarva, Jeffrey R. Whiteaker, K. Ketchum, Karl R. Clauser, K. Ruggles, Kimberly Elburn, L. Hannick, Mark Watson, Mauricio Oberti, M. Mesri, M. Sanders, M. Borucki, M. Gillette, Michael Snyder, Nathan Edwards, Negin Vatanian, Paul A. Rudnick, P. McGarvey, Philipp Mertins, R. Townsend, Ratna R. Thangudu, Robert C. Rivers, Samuel H. Payne, S. Davies, S. Cai, S. Stein, Steven A. Carr, S. Skates, S. Madhavan, T. Hiltke, Xian Chen, Ying-Ming Zhao, Yue Wang, Zhen Zhang

Cell

DOI

2019

Microscaled proteogenomic methods for precision oncology

Shankha Satpathy, E. Jaehnig, Karsten Krug, Beom-Jun Kim, Alexander B. Saltzman, Doug W. Chan, Kimberly R. Holloway, M. Anurag, Chen Huang, Purba Singh, A. Gao, Noel Namai, Yong-Chao Dou, Bo Wen, S. Vasaikar, D. Mutch, M. Watson, Cynthia X. Ma, F. Ademuyiwa, M. Rimawi, R. Schiff, J. Hoog, S. Jacobs, A. Malovannaya, T. Hyslop, K. Clauser, D. Mani, C. Perou, George Miles, Bing Zhang, M. Gillette, S. Carr, M. Ellis

Nature Communications

DOI

2019

Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma

David J. Clark, S. Dhanasekaran, F. Petralia, Jianbo Pan, Xiaoyu Song, Ying-Wei Hu, Felipe da Veiga Leprevost, B. Reva, T. Lih, Hui-Yin Chang, Weiping Ma, Chen Huang, C. Ricketts, Li-Jun Chen, A. Krek, Yi-Ze Li, D. Rykunov, Q. K. Li, Lin S. Chen, U. Ozbek, S. Vasaikar, Yi-Ge Wu, S. Yoo, Shrabanti Chowdhury, M. Wyczalkowski, Jia-Yi Ji, M. Schnaubelt, Andy T. Kong, Sunantha Sethuraman, D. Avtonomov, Ming-Hui Ao, A. Colaprico, Song Cao, Kyung-Cho Cho, Selim Kalayci, Shiyong Ma, Wen-Ke Liu, K. Ruggles, A. Calinawan, Z. Gümüş, Daniel J. Geiszler, Emily A. Kawaler, Guo-Ci Teo, Bo Wen, Yu-Ping Zhang, Sarah Keegan, Kai Li, Feng Chen, Nathan J. Edwards, P. Pierorazio, Xi Chen, C. Pavlovich, A. Hakimi, G. Bromiński, James J. Hsieh, A. Antczak, T. Omelchenko, J. Lubiński, M. Wiznerowicz, W. Linehan, C. Kinsinger, Mathangi Thiagarajan, Emily Boja, M. Mesri, T. Hiltke, A. Robles, H. Rodriguez, Jiang Qian, D. Fenyö, Bing Zhang, L. Ding, E. Schadt, A. Chinnaiyan, Zhen Zhang, G. Omenn, M. Cieslik, D. Chan, A. Nesvizhskii, Pei Wang, Hui Zhang

Cell

DOI

2019

A comprehensive proteogenomic analysis of uterine cancer

M. Anderson, Li Ding, M. Gritsenko, Emily A. Kawaler, Mathangi Thiagarajan, Yong-Chao Dou, W. Liu, Cui D. Zhou, M. Mesri, Qing-Song Gao, S. Payne, Bo Wen, Liang-Bo Wang, C. Kinsinger, Yi-Ge Wu, D. Levine, Richard D. Smith, M. Ellis, K. Ruggles, Henry Rodriguez, K. Rodland, Bing Zhang, D. Fenyö, T. Liu

Gynecologic Oncology

DOI

2019

Abstract LB-006: Proteogenomic characterization of human colon cancer reveals new therapeutic opportunities

Bing Zhang, S. Vasaikar, Chen Huang, Xiaojing Wang, V. Petyuk, Sara R. Savage, Bo Wen, Yong-Chao Dou, Yun Zhang, Zhiao Shi, O. A. Arshad, M. Gritsenko, L. J. Zimmerman, J. Mcdermott, T. Clauss, Ronald J. Moore, Rui Zhao, Matthew E. Monroe, Yi-Ting Wang, Matthew C. Chambers, R. Slebos, Ken S. Lau, Q. Mo, L. Ding, M. Ellis, Mathangi Thiagarajan, C. Kinsinger, H. Rodriguez, Richard D. Smith, K. Rodland, D. Liebler, Tao Liu

Cancer Chemistry

DOI

2019

PepQuery enables fast, accurate, and convenient proteomic validation of novel genomic alterations

Bo Wen, Xiaojing Wang, Bing Zhang

Genome Research

DOI

2019

The Nuclear Matrix Protein SAFB Cooperates with Major Satellite RNAs to Stabilize Heterochromatin Architecture Partially through Phase Separation

Xiangru Huo, Luzhang Ji, Yuwen Zhang, Pin Lv, Xuan Duc Cao, Qianfeng Wang, Zixiang Yan, Shuangshuang Dong, Duo Du, Feng Zhang, Gang Wei, Yun Liu, Bo Wen

Molecular Cell

DOI

2019

Disruption of nuclear speckles reduces chromatin interactions in active compartments

Shibin Hu, Pin Lv, Zixiang Yan, Bo Wen

Epigenetics & Chromatin

DOI

2019

Determination of local chromatin interactions using a combined CRISPR and peroxidase APEX2 system

Wenqing Qiu, Zhijiao Xu, Min Zhang, Dandan Zhang, Hui Fan, Taotao Li, Qianfeng Wang, Peiru Liu, Zaihua Zhu, Duo Du, Minjia Tan, Bo Wen, Yun Liu

Nucleic Acids Research

DOI

2019

Chronic stress reduces spermatogenic cell proliferation in rat testis.

Pengxiang Tian, Pin Lv, Weibo Shi, Minzhe Zhu, Bin Cong, Bo Wen

PubMed

2018

PDV: an integrative proteomics data viewer

Kai Li, Marc Vaudel, Bing Zhang, Yan Ren, Bo Wen

Bioinform.

DOI

2018

The Long Noncoding RNA Lncenc1 Maintains Naive States of Mouse ESCs by Promoting the Glycolysis Pathway

Zihao Sun, Minzhe Zhu, Pin Lv, Lü Cheng, Qianfeng Wang, Pengxiang Tian, Zixiang Yan, Bo Wen

Stem Cell Reports

DOI

2017

Detection of Proteome Diversity Resulted from Alternative Splicing is Limited by Trypsin Cleavage Specificity

Xiaojing Wang, Simona G. Codreanu, Bo Wen, Kai Li, Matthew C. Chambers, D. Liebler, Bing Zhang

Molecular & Cellular Proteomics

DOI

2016

PGA: an R/Bioconductor package for identification of novel peptides using a customized database derived from RNA-Seq

Bo Wen, Shaohang Xu, Ruo Zhou, Bing Zhang, Xiaojing Wang, Xin Liu, X. Xu, Siqi Liu

BMC Bioinformatics

DOI

2016

Expression dynamics, relationships, and transcriptional regulations of diverse transcripts in mouse spermatogenic cells

Xiwen Lin, Miao Han, Lü Cheng, Jian Chen, Zhuqiang Zhang, Ting Shen, Min Wang, Bo Wen, Ting Ni, Chunsheng Han

RNA Biology

DOI

2016

Long noncoding RNAs as Organizers of Nuclear Architecture

Lü Cheng, Hui Ming, Minzhe Zhu, Bo Wen

Science China Life Sciences

DOI

2015

MacroH2A1 associates with nuclear lamina and maintains chromatin architecture in mouse liver cells

Yuhua Fu, Pin Lv, Guoquan Yan, Hui Fan, Lü Cheng, Feng Zhang, Yongjun Dang, Hao Wu, Bo Wen

Scientific Reports

DOI

2013

p300-Dependent Acetylation of Activating Transcription Factor 5 Enhances C/EBPβ Transactivation of C/EBPα during 3T3-L1 Differentiation

Yue Zhao, Ya-Dong Zhang, You-You Zhang, Shu-wen Qian, Zhi-Chun Zhang, Shu-Fen Li, Liang Guo, Yuan Liu, Bo Wen, Qun‐Ying Lei, Qi-Qun Tang, Xi Li

Molecular and Cellular Biology

DOI

2013

Induction of EMT-like response by BMP4 via up-regulation of lysyl oxidase is required for adipocyte lineage commitment

Hai-Yan Huang, Su-Zhen Chen, Wen-Ting Zhang, Shanshan Wang, Yang Liu, Xi Li, Xia Sun, Yi-Ming Li, Bo Wen, Qun‐Ying Lei, Qi-Qun Tang

Stem Cell Research

DOI

2012

Euchromatin islands in large heterochromatin domains are enriched for CTCF binding and differentially DNA-methylated regions

Bo Wen, Hao Wu, Yuin‐Han Loh, Eiríkur Briem, George Q. Daley, Andrew P. Feinberg

BMC Genomics

DOI

2012

Mitochondrial origin of the matrilocal Mosuo people in China

Yan Lü, Chuan‐Chao Wang, Zhendong Qin, Bo Wen, Sara E. Farina, Jin Li, Hui Li, the Genographic Consortium

Mitochondrial DNA

DOI

2011

Large chromatin domains in pluripotent and differentiated cells

Shibin Hu, Lü Cheng, Bo Wen

Acta Biochimica et Biophysica Sinica

DOI

2011

Human Migration through Bottlenecks from Southeast Asia into East Asia during Last Glacial Maximum Revealed by Y Chromosomes

Xiaoyun Cai, Zhendong Qin, Bo Wen, Shuhua Xu, Yi Wang, Yan Lü, Lan‐Hai Wei, Chuan‐Chao Wang, Shilin Li, Xingqiu Huang, Jin Li, Hui Li

PLoS ONE

DOI

2008

A spatial analysis of genetic structure of human populations in China reveals distinct difference between maternal and paternal lineages

Fuzhong Xue, Yi Wang, Shuhua Xu, Feng Zhang, Bo Wen, Xue-Sen Wu, Ming Lü, Ranjan Deka, Ji Qian, Jin Li

European Journal of Human Genetics

DOI

2008

Paternal genetic affinity between western Austronesians and Daic populations

Hui Li, Bo Wen, Shu-Juo Chen, Bing Su, Patcharin Pramoonjago, Yangfan Liu, Shang‐Ling Pan, Zhendong Qin, Wenhong Liu, Xu Cheng, Ningning Yang, Xin Li, Dinhbinh Tran, Jin Li, Mutsu Hsu, Ranjan Deka, Sangkot Marzuki, Chia-Chen Tan, Jin Li

BMC Evolutionary Biology

DOI

2007

Mitochondrial DNA diversity and population differentiation in southern East Asia

Hui Li, Xiaoyun Cai, Elizabeth R. Winograd‐Cort, Bo Wen, Xu Cheng, Zhendong Qin, Wenhong Liu, Yangfan Liu, Shang‐Ling Pan, Ji Qian, Chia‐Chen Tan, Jin Li

American Journal of Physical Anthropology

DOI

2006

Complete sequence data support lack of balancing selection on PRNP in a natural Chinese population

Zan Qin, Bo Wen, Yungang He, Yi Wang, Shuhua Xu, Ji Qian, Jin Li, Jin Li

Journal of Human Genetics

DOI

2006

Linkage disequilibrium sharing and haplotype-tagged SNP portability between populations

Wei Huang, Yungang He, Haifeng Wang, Ying Wang, Yangfan Liu, Yi Wang, Xun Chu, Ying Wang, Liang Xu, Yayun Shen, Xiaoyan Xiong, Hui Li, Bo Wen, Ji Qian, Wentao Yuan, Chenhui Zhang, Yi Wang, Hongquan Jiang, Guoping Zhao, Zhu Chen, Jin Li

Proceedings of the National Academy of Sciences

DOI

2005

A Frequent Partial AZFc Deletion does not Render an Increased Risk of Spermatogenic Impairment in East Asians

Feng Zhang, Z. Li, Bo Wen, Jie Jiang, M. Shao, Yong Bo Zhao, Yungang He, Xinmao Song, Jing Qian, Daru Lu, Jin Li

Annals of Human Genetics

DOI

2005

Phantom mutation hotspots in human mitochondrial DNA

Anita Kloss‐Brandstätter, Timo Sänger, Sabine Lutz‐Bonengel, Walther Parson, Éliane Béraud-Colomb, Bo Wen, Qing‐Peng Kong, Cláudio M. Bravi, Hans‐Jürgen Bandelt

Electrophoresis

DOI

2005

Y-Chromosome Evidence of Southern Origin of the East Asian–Specific Haplogroup O3-M122

Hong Shi, Yongli Dong, Bo Wen, Chunjie Xiao, Peter A. Underhill, Peidong Shen, Ranajit Chakraborty, Jin Li, Bing Su

The American Journal of Human Genetics

DOI

2004

Genetic evidence supports demic diffusion of Han culture

Bo Wen, Hui Li, Jin Li, Xiufeng Song, Feng Zhang, Yungang He, Feng Li, Yang Gao, Xianyun Mao, Liang Zhang, Ji Qian, Jingze Tan, Jianzhong Jin, Wei Huang, Ranjan Deka, Bing Su, Ranajit Chakraborty, Jin Li

Nature

DOI

2004

Genetic Structure of Hmong-Mien Speaking Populations in East Asia as Revealed by mtDNA Lineages

Bo Wen, Hui Li, Song Gao, Xianyun Mao, Yang Gao, Feng Li, Feng Zhang, Yungang He, Yongli Dong, Youjun Zhang, Wenju Huang, Jianzhong Jin, Chunjie Xiao, Jin Li, Ranajit Chakraborty, Bing Su, Ranjan Deka, Jin Li

Molecular Biology and Evolution

DOI

2004

Analyses of Genetic Structure of Tibeto-Burman Populations Reveals Sex-Biased Admixture in Southern Tibeto-Burmans

Bo Wen, Xuanhua Xie, Song Gao, Hui Li, Hong Shi, Xiufeng Song, Tingzhi Qian, Chunjie Xiao, Jianzhong Jin, Bing Su, Jin Li, Ranajit Chakraborty, Jin Li

The American Journal of Human Genetics

DOI

会议论文

2020

核基质蛋白对染色质高维结构的调控作用

文波

《中国生物化学与分子生物学会2020全国学术在线会议》

DOI

预印本

2020

Panoramic transcriptome analysis and functional screening of long noncoding RNAs in mouse spermatogenesis

Kai Li, Jiayue Xu, Yanyun Luo, Dingfeng Zou, Ruiqin Han, Shunshun Zhong, Qing Zhao, Xinyu Mang, Mengzhen Li, Yanmin Si, Yan Lu, Pengyu Li, Cheng Jin, Zhipeng Wang, Fang Wang, Shiying Miao, Bo Wen, Linfang Wang, Yanni Ma, Jia Yu, Wei Song

Genome Research

DOI

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