兰雨佳｜哈尔滨医科大学｜学者主页

2023

Identifying the personalized driver gene sets maximally contributing to abnormality of transcriptome phenotype in glioblastoma multiforme individuals

Jinyuan Xu, Bo Pang, Yujia Lan, Renjie Dou, Shuai Wang, Shaobo Kang, Wanmei Zhang, Yuanyuan Liu, Yijing Zhang, Y. Ping

Molecular Oncology

DOI

2023

Dissecting cellular states of infiltrating microenvironment cells in melanoma by integrating single-cell and bulk transcriptome analysis

Aiai Shi, M. Yan, Bo Pang, Lin Pang, Yi-Han Wang, Yujia Lan, Xinxin Zhang, Jinyuan Xu, Y. Ping, Jing Hu

BMC Immunology

DOI

2022

Systematic investigation of the prognostic impact of clonal status of somatic mutations across multiple cancer types.

P. Cheng, Yujia Lan, Jianlong Liao, E. Zhao, Haoteng Yan, Li-Wen Xu, A. Suru, Y. Ping, Jinyuan Xu

Genomics

DOI

2022

Decoding the associations between cell functional states in head and neck cancer based on single-cell transcriptome.

Huating Yuan, M. Yan, Xin Liang, W. Liu, Shengyuan He, Shangqin Sun, Xinxin Zhang, Yujia Lan

Oral Oncology

DOI

2022

Revealing the functions of clonal driver gene mutations in patients based on evolutionary dependencies

Yujia Lan, W. Liu, Xiaobo Hou, Shuai Wang, Hao Wang, Menglan Deng, Gui-Yu Wang, Y. Ping, Xinxin Zhang

Human Mutation

DOI

2022

Revealing the contribution of somatic gene mutations to shaping tumor immune microenvironment

Li-Wen Xu, Shiwei Zhu, Yujia Lan, M. Yan, Zedong Jiang, Jiali Zhu, Gao-Ming Liao, Y. Ping, Jinyuan Xu, Bo Pang, Yun-Peng Zhang, Yun Xiao, Xia Li

Briefings Bioinform.

DOI

2021

Analysis of Mutations and Dysregulated Pathways Unravels Carcinogenic Effect and Clinical Actionability of Mutational Processes

Zedong Jiang, Gao-Ming Liao, Yiran Yang, Yujia Lan, Li-Wen Xu, M. Yan, Yao Zhou, Jiali Zhu, Wei Liu, J. Bai, Yun Xiao, Xia Li

Frontiers in Cell and Developmental Biology

DOI

2021

Transcriptomic heterogeneity of driver gene mutations reveals novel mutual exclusivity and improves exploration of functional associations

Yujia Lan, Wei Liu, Wanmei Zhang, Jing Hu, Xiao-Jing Zhu, Linyun Wan, S. A, Y. Ping, Yun Xiao

Cancer Medicine

DOI

2021

Identifying Key Somatic Copy Number Alterations Driving Dysregulation of Cancer Hallmarks in Lower-Grade Glioma

Yao Zhou, Shuai Wang, Haoteng Yan, Bo Pang, Xinxin Zhang, Lin Pang, Yihan Wang, Jinyuan Xu, Jing Hu, Yujia Lan, Y. Ping

Frontiers in Genetics

DOI

2021

Dissecting the Invasion-Associated Long Non-coding RNAs Using Single-Cell RNA-Seq Data of Glioblastoma

Bo Pang, Fei Quan, Y. Ping, Jing Hu, Yujia Lan, Lin Pang

Frontiers in Genetics

DOI

2020

Transcriptome analysis reveals a reprogramming energy metabolism-related signature to improve prognosis in colon cancer

Xinxin Zhang, Jinyuan Xu, Yujia Lan, Fenghua Guo, Yun Xiao, Yixue Li, Xia Li

PeerJ

DOI

2020

Prognostic impact of a lymphocyte activation-associated gene signature in GBM based on transcriptome analysis

Yujia Lan, E. Zhao, Xinxin Zhang, Xiao-Jing Zhu, Linyun Wan, S. A, Y. Ping, Yihan Wang

PeerJ

DOI

2020

Prioritizing Gene Cascading Paths to Model Colorectal Cancer Through Engineered Organoids

Y. Ping, Chaohan Xu, Li-Wen Xu, Gao-Ming Liao, Yao Zhou, Chunyu Deng, Yujia Lan, Fulong Yu, Jian Shi, Li Wang, Yun Xiao, Xia Li

Frontiers in Bioengineering and Biotechnology

DOI

2020

Identification of a Six-lncRNA Signature With Prognostic Value for Breast Cancer Patients

E. Zhao, Yujia Lan, Fei Quan, Xiao-Jing Zhu, S. A, Linyun Wan, Jinyuan Xu, Jing Hu

Frontiers in Genetics

DOI

2019

Revealing clonality and subclonality of driver genes for clinical survival benefits in breast cancer

Yujia Lan, E. Zhao, Shang-Yi Luo, Yun Xiao, Xia Li, Shujun Cheng

Breast Cancer Research and Treatment

DOI

2019

Identifying mutual exclusivity across cancer genomes: computational approaches to discover genetic interaction and reveal tumor vulnerability

Yulan Deng, Shang-Yi Luo, Chunyu Deng, Tao Luo, Wenkang Yin, Hongyi Zhang, Yong E. Zhang, Xinxin Zhang, Yujia Lan, Y. Ping, Yun Xiao, Xia Li

Briefings Bioinform.

DOI

2019

Comprehensive analysis of long noncoding RNA (lncRNA)-chromatin interactions reveals lncRNA functions dependent on binding diverse regulatory elements

Guanxiong Zhang, Yujia Lan, Aimin Xie, Jian Shi, Hongying Zhao, Li-Wen Xu, Shiwei Zhu, Tao Luo, Tingting Zhao, Yun Xiao, Xia Li

Journal of Biological Chemistry

DOI

2019

Identifying functions and prognostic biomarkers of network motifs marked by diverse chromatin states in human cell lines

Li Wang, Hongying Zhao, Jing Li, Yingqi Xu, Yujia Lan, Wenkang Yin, Xiaoqin Liu, Lei Yu, Shihua Lin, M. Du, Xia Li, Yun Xiao, Yun-Peng Zhang

Oncogene

DOI

2018

Breast cancer prognosis signature: linking risk stratification to disease subtypes

Fulong Yu, Fei Quan, Jinyuan Xu, Yan Zhang, Yi Xie, Jingyu Zhang, Yujia Lan, Huating Yuan, Hongyi Zhang, Shujun Cheng, Yun Xiao, Xia Li

Briefings Bioinform.

DOI

2018

A pan‐cancer atlas of cancer hallmark‐associated candidate driver lncRNAs

Yulan Deng, Shang-Yi Luo, Xinxin Zhang, C. Zou, Huating Yuan, Gao-Ming Liao, Li-Wen Xu, Chunyu Deng, Yujia Lan, Tingting Zhao, Xu Gao, Yun Xiao, Xia Li

Molecular Oncology

DOI

2018

CellMarker: a manually curated resource of cell markers in human and mouse

Xinxin Zhang, Yujia Lan, Jinyuan Xu, Fei Quan, E. Zhao, Chunyu Deng, Tao Luo, Li-Wen Xu, Gao-Ming Liao, M. Yan, Y. Ping, Feng Li, Aiai Shi, J. Bai, Tingting Zhao, Xia Li, Yun Xiao

Nucleic Acids Res.

DOI

2018

Transcriptome analysis reveals a long non-coding RNA signature to improve biochemical recurrence prediction in prostate cancer

Jinyuan Xu, Yujia Lan, Fulong Yu, Shiwei Zhu, Jianrong Ran, Jiali Zhu, Hongyi Zhang, Lili Li, Shujun Cheng, Yun Xiao, Xia Li

OncoTarget

DOI

2017

DiseaseEnhancer: a resource of human disease-associated enhancer catalog

Guanxiong Zhang, Jian Shi, Shiwei Zhu, Yujia Lan, Li-Wen Xu, Huating Yuan, Gao-Ming Liao, Xiaoqin Liu, Yunpeng Zhang, Yun Xiao, Xia Li

Nucleic Acids Res.

DOI

2016

A comprehensive overview of lncRNA annotation resources

Jinyuan Xu, J. Bai, Xinxin Zhang, Yanling Lv, Yonghui Gong, Ling Liu, Hongying Zhao, Fulong Yu, Y. Ping, Guanxiong Zhang, Yujia Lan, Yun Xiao, Xia Li

Briefings Bioinform.

DOI

2016

'Traffic light rules': Chromatin states direct miRNA-mediated network motifs running by integrating epigenome and regulatome.

Hongying Zhao, Guanxiong Zhang, Lin Pang, Yujia Lan, Li Wang, Fulong Yu, Jing Hu, Feng Li, Tingting Zhao, Yun Xiao, Xia Li

Biochimica et Biophysica Acta

DOI

2016

Identifying the crosstalk of dysfunctional pathways mediated by lncRNAs in breast cancer subtypes.

Li Wang, Jing Li, Hongying Zhao, Jing Hu, Y. Ping, Feng Li, Yujia Lan, Chaohan Xu, Yun Xiao, Xia Li

Molecular Biosystems

DOI

2015

Gene Perturbation Atlas (GPA): a single-gene perturbation repository for characterizing functional mechanisms of coding and non-coding genes

Yun Xiao, Yonghui Gong, Yanling Lv, Yujia Lan, Jing Hu, Feng Li, Jinyuan Xu, J. Bai, Yulan Deng, Ling Liu, Guanxiong Zhang, Fulong Yu, Xia Li

Scientific Reports

DOI

兰雨佳

精选作品

期刊论文

Identifying the personalized driver gene sets maximally contributing to abnormality of transcriptome phenotype in glioblastoma multiforme individuals

Dissecting cellular states of infiltrating microenvironment cells in melanoma by integrating single-cell and bulk transcriptome analysis

Systematic investigation of the prognostic impact of clonal status of somatic mutations across multiple cancer types.

Decoding the associations between cell functional states in head and neck cancer based on single-cell transcriptome.

Revealing the functions of clonal driver gene mutations in patients based on evolutionary dependencies

Revealing the contribution of somatic gene mutations to shaping tumor immune microenvironment

Analysis of Mutations and Dysregulated Pathways Unravels Carcinogenic Effect and Clinical Actionability of Mutational Processes

Transcriptomic heterogeneity of driver gene mutations reveals novel mutual exclusivity and improves exploration of functional associations

Identifying Key Somatic Copy Number Alterations Driving Dysregulation of Cancer Hallmarks in Lower-Grade Glioma

Dissecting the Invasion-Associated Long Non-coding RNAs Using Single-Cell RNA-Seq Data of Glioblastoma

Transcriptome analysis reveals a reprogramming energy metabolism-related signature to improve prognosis in colon cancer

Prognostic impact of a lymphocyte activation-associated gene signature in GBM based on transcriptome analysis

Prioritizing Gene Cascading Paths to Model Colorectal Cancer Through Engineered Organoids

Identification of a Six-lncRNA Signature With Prognostic Value for Breast Cancer Patients

Revealing clonality and subclonality of driver genes for clinical survival benefits in breast cancer

Identifying mutual exclusivity across cancer genomes: computational approaches to discover genetic interaction and reveal tumor vulnerability

Comprehensive analysis of long noncoding RNA (lncRNA)-chromatin interactions reveals lncRNA functions dependent on binding diverse regulatory elements

Identifying functions and prognostic biomarkers of network motifs marked by diverse chromatin states in human cell lines

Breast cancer prognosis signature: linking risk stratification to disease subtypes

A pan‐cancer atlas of cancer hallmark‐associated candidate driver lncRNAs

CellMarker: a manually curated resource of cell markers in human and mouse

Transcriptome analysis reveals a long non-coding RNA signature to improve biochemical recurrence prediction in prostate cancer

DiseaseEnhancer: a resource of human disease-associated enhancer catalog

A comprehensive overview of lncRNA annotation resources

'Traffic light rules': Chromatin states direct miRNA-mediated network motifs running by integrating epigenome and regulatome.

Identifying the crosstalk of dysfunctional pathways mediated by lncRNAs in breast cancer subtypes.

Gene Perturbation Atlas (GPA): a single-gene perturbation repository for characterizing functional mechanisms of coding and non-coding genes

数据集

MutCell CRC single-cell atlas and malignant-cell calibration reference

研究方向