百晓学者学者目录

龚辉

副教授、教授、讲师,华中科技大学

精选作品

期刊论文

2023

Low-temperature resin embedding of the whole brain for various precise structures dissection

Jiaojiao Tian, Yingying Chen, Tao Jiang, Xue-Yan Jia, Hui Gong, Xiang-Ning Li

iScience

2023

Full-Spectrum Neuronal Diversity and Stereotypy through Whole Brain Morphometry

Hanchuan Peng, Yufeng Liu, Shengdian Jiang, Ying-Xin Li, Sujun Zhao, Zhi-Xi Yun, Zuohan Zhao, Lingli Zhang, Gaoyu Wang, Xin Chen, L. Manubens-Gil, Yuning Hang, Marta Garcia-Forn, Wen Wang, S. de Rubeis, Zhu-Hao Wu, P. Osten, Hui Gong, M. Hawrylycz, P. Mitra, Hong-wei Dong, Qing-Ming Luo, G. Ascoli, Hongkui Zeng, Lijuan Liu

Research Square

2023

On-line clearing and staining method for the efficient optical imaging of large volume samples at the cellular resolution.

Yunfei Zhang, Guang-Cai Liu, Xiang-Ning Li, Hui Gong, Qing-Ming Luo, Xiao-Quan Yang

Biomedical Optics Express

2023

Whole-brain mapping of histaminergic projections in mouse brain

Wenkai Lin, Lingyu Xu, Yan-Rong Zheng, Sile An, Meng-Ting Zhao, Weiwei Hu, Mengyao Li, Hui Dong, An-An Li, Yu-Long Li, Hui Gong, Gang Pan, Yi Wang, Qing-Ming Luo, Zhong Chen

Proceedings of the National Academy of Sciences of the United States of America

2023

Data-Driven Morphological Feature Perception of Single Neuron With Graph Neural Network

Tianfang Zhu, Gang Yao, Dong-Li Hu, Chuangchuang Xie, Peng-Cheng Li, Xiao-Quan Yang, Hui Gong, Qing-Ming Luo, An-An Li

IEEE Transactions on Medical Imaging

2023

Projectome-defined subtypes and modular intra-hypothalamic subnetworks of peptidergic neurons

Zhuo-lei Jiao, Taosha Gao, Xiao-Fei Wang, Wen Zhang, Nasim Biglari, Emma E. Boxer, Lukas Steuernagel, Xiao-Jing Ding, Zi-Xian Yu, Ming-Juan Li, Mingkun Hao, Huanyuan Zhou, Xuan-Zi Cao, Shuaishuai Li, Tao Jiang, Jiamei Qi, Xue-Yan Jia, Zhao Feng, Bi-Yu Ren, Yu Chen, Xiaoxue Shi, Dan Wang, Xin-Ran Wang, Luyao Han, Yinlong Liang, Congcong Wang, E. Li, Yue Hu, Zi Tao, Humingzhu Li, Xiang Yu, Min Xu, Hung-Chun Chang, Yifeng Zhang, Huatai Xu, Jun Yan, An-An Li, Qing-Ming Luo, R. Stoop, S. Sternson, J. Brüning, D. Anderson, M. Poo, Hui Gong, Yangang Sun, Xiaohong Xu

bioRxiv

2022

MorphoGNN: Morphological Embedding for Single Neuron with Graph Neural Networks

Tianfang Zhu, Gang Yao, Dong-Li Hu, Chuangchuang Xie, Hui Gong, An-An Li

bioRxiv

2022

Whole-Brain Direct Inputs to and Axonal Projections from Excitatory and Inhibitory Neurons in the Mouse Primary Auditory Area

Meng-Ting Zhao, Miao Ren, Tao Jiang, Xue-Yan Jia, Xiao-Jun Wang, An-An Li, Xiang-Ning Li, Qing-Ming Luo, Hui Gong

Neuroscience Bulletin

2022

Author Correction: Anatomically revealed morphological patterns of pyramidal neurons in layer 5 of the motor cortex

Siqi Jiang, Yue Guan, Shangbin Chen, Xue-Yan Jia, Hong Ni, Yalun Zhang, Yutong Han, Xue Peng, Can Zhou, An-An Li, Qing-Ming Luo, Hui Gong

Scientific Reports

2022

Multiscale Analysis of Cellular Composition and Morphology in Intact Cerebral Organoids

Haihua Ma, Juan Chen, Zhiyu Deng, T. Sun, Qing-Ming Luo, Hui Gong, Xiang-Ning Li, Ben Long

Biology

2022

MT volume 30 issue 3 Cover and Front matter

An-An Li, Hui Gong, Bin Zhang, Qing-Di Wang, Cheng Yan, Jingpeng Wu, Li-Yu Daisy Liu, Shaoqun Zeng, Qing-Ming Luo, Lukas Krainer, Kavita K. Aswani, Marit Smeets

Microscopy Today

2022

A spatial and cellular distribution of rabies virus infection in the mouse brain revealed by fMOST and single‐cell RNA sequencing

Yachun Zhang, Xu-Dong Xing, Ben Long, Yandi Cao, Simeng Hu, Xiang-Ning Li, Yalan Yu, Dayong Tian, Bao-Kun Sui, Zhaochen Luo, Wei Liu, Lei Lv, Qiong Wu, Jin-Xia Dai, Ming Zhou, Heyou Han, Zhen F. Fu, Hui Gong, F. Bai, Ling Zhao

Clinical and Translational Medicine

2022

Extension of Endocardium-Derived Vessels Generate Coronary Arteries in Neonates

Juan Tang, Huan Zhu, Xueying Tian, Haixiao Wang, Shao-Yan Liu, Kuo Liu, Huan Zhao, Lingjuan He, Xiuzhen Huang, Zhao Feng, Zhangheng Ding, Ben Long, Yan Yan, N. Smart, Hui Gong, Q. Luo, Bin Zhou

Circulation Research

2022

Single-neuron projectome of mouse prefrontal cortex

Le Gao, Sang Liu, Lin Gou, Ya-Chuang Hu, Yan-He Liu, Li Deng, Danyi Ma, Haifang Wang, Qiaoqiao Yang, Zhao-Qin Chen, Dechen Liu, Shou Qiu, Xiao-Fei Wang, Dan-Ying Wang, Xin-Ran Wang, Bi-Yu Ren, Qing-Xu Liu, Tian-Zhi Chen, Xiaoxue Shi, Hai-Shan Yao, Chun Xu, Cheng-Yu T. Li, Yangang Sun, An-An Li, Qing-Ming Luo, Hui Gong, Ninglong Xu, Jun Yan

Nature Neuroscience

2022

AIE-based Fluorescent Micro-optical Sectioning Tomography for Automatic 3D Mapping of β-amyloid Plaques in Tg Mouse Whole Brain

Ya-Long Wang, Ting Luo, Jianping Zhang, Cheng Fan, Xiangning Li, Chong Li, Hui Gong, Qing-Ming Luo, Ming-Qiang Zhu

Chemical Engineering Journal

2022

Correction to "Chemical Sectioning for Immunofluorescence Imaging".

Ruixi Chen, Hongfu Zhou, An-An Li, Xiaofeng Cheng, Xiao-Xiang Liu, Fei Huang, Yu Wang, Yu-Rong Liu, Gong Rao, Hui Gong, Xiu-Li Liu, Shao-Qun Zeng

Analytical Chemistry

2022

Acetylcholine deficiency disrupts extratelencephalic projection neurons in the prefrontal cortex in a mouse model of Alzheimer’s disease

Qing-Tao Sun, Jianping Zhang, An-An Li, Mei Yao, Guang-Cai Liu, Si-Qi Chen, Yue Luo, Zhi Wang, Hui Gong, Xiang-Ning Li, Qing-Ming Luo

Nature Communications

2022

Simultaneously cholinergic projection in Ascending and Descending Circuits from Midbrain

Peilin Zhao, Tao Jiang, Huading Wang, Xue-Yan Jia, Anan Li, Jing Yuan, Qing-Ming Luo, Xiang-Ning Li, Hui Gong

bioRxiv

2022

Dissection of the long-range projections of specific neurons at the synaptic level in the whole mouse brain

Jiaojiao Tian, Miao Ren, Peilin Zhao, Shukang Luo, Yingying Chen, Xiaofeng Xu, Tao Jiang, Qing-Tao Sun, An-An Li, Hui Gong, Xiang-Ning Li, Qing-Ming Luo

Proceedings of the National Academy of Sciences of the United States of America

2021

Deep learning based neuronal soma detection and counting for Alzheimer's disease analysis

Qiufu Li, Yu Zhang, Hanbang Liang, Hui Gong, Liang Jiang, Qiong Liu, Linlin Shen

Comput. Methods Programs Biomed.

2021

Boosting Multilabel Semantic Segmentation for Somata and Vessels in Mouse Brain

Xinglong Wu, Yu-Hang Tao, Guan-Wei He, Dun Liu, Mei-Ling Fan, Shuo Yang, Hui Gong, Rong Xiao, Shangbin Chen, Jin Huang

Frontiers in Neuroscience

2021

Pain modulates dopamine neurons via a spino-parabrachio-mesencephalic circuit

Hongbin Yang, J. D. de Jong, Ignas Černiauskas, James R. Peck, Byung Kook Lim, Hui Gong, H. Fields, S. Lammel

Nature Neuroscience

2021

High-Throughput Strategy for Profiling Sequential Section With Multiplex Staining of Mouse Brain

Si-Qi Chen, Zhi-Xiang Liu, An-An Li, Hui Gong, Ben Long, Xiang-Ning Li

Frontiers in Neuroanatomy

2021

Delineating the organization of projection neuron subsets in primary visual cortex with multiple fluorescent rabies virus tracing

Liang Li, Yajie Tang, Leqiang Sun, Jin-Song Yu, Siheng Zhang, Hui Gong, Hannah C. Webber, Xiaoyu Zhang, Zhe Hu, Xiang-Ning Li, K. Rahman, Xiang-Wei Shi, Zhenfang Fu, Jin-Xia Dai, Gang Cao

Brain Structure and Function

2021

Restoration of FMRP expression in adult V1 neurons rescues visual deficits in a mouse model of fragile X syndrome

Chaojuan Yang, Yong-Lu Tian, Feng Su, Yang-Zhen Wang, Meng-Na Liu, Hongyi Wang, Yaxuan Cui, Peijiang Yuan, Xiang-Ning Li, An-An Li, Hui Gong, Qing-Ming Luo, Desheng Zhu, Peng Cao, Yun-Bo Liu, Xunli Wang, Min-Hua Luo, Fu-Qiang Xu, Wei Xiong, Lie-Chen Wang, Xiang-Yao Li, Chen Zhang

Protein & Cell

2021

Precision vibratome for high-speed ultrathin biotissue cutting and organ-wide imaging

Yafeng Li, Zhangheng Ding, Lei Deng, Guoqing Fan, Qi Zhang, Hui Gong, An-An Li, Jing Yuan, Jian-Wei Chen

iScience

2021

Poly[N-(2-acetamidoethyl)acrylamide] supramolecular hydrogels with multiple H-bond crosslinking enable mouse brain embedding and expansion microscopy

Peng-Ju Zhao, Chong Li, Ya-Long Wang, Cheng Fan, Xiangning Li, Hui Gong, Qing-Ming Luo, Ming-Qiang Zhu

2021

MT volume 29 issue 1 Cover and Front matter

An-An Li, Hui Gong, Bin Zhang, Qing-Di Wang, Cheng Yan, Jingpeng Wu, Qian Liu, Shaoqun Zeng, Q. Luo

Microscopy Today

2021

Line-scanning optical sectioning by digital structured modulation

Rui Jin, Qiuyuan Zhong, Chenyu Jiang, Dejie Zhang, Si-Qi Chen, Hui Gong, Jing Yuan

2021

Chemical Sectioning for Immunofluorescence Imaging.

Ruixi Chen, Hongfu Zhou, An-An Li, Xiaofeng Cheng, Xiao-Xiang Liu, Fei Huang, Yu Wang, Yu-Rong Liu, Hui Gong, Xiu-Li Liu, Shaoqun Zeng

Analytical Chemistry

2021

High-definition imaging using line-illumination modulation microscopy

Qiuyuan Zhong, An-An Li, Rui Jin, Dejie Zhang, Xiang-Ning Li, Xue-Yan Jia, Zhangheng Ding, Pan Luo, Can Zhou, Chenyu Jiang, Zhao Feng, Zhihong Zhang, Hui Gong, Jing Yuan, Q. Luo

Nature Methods

2021

A Whole-Brain Connectivity Map of VTA and SNc Glutamatergic and GABAergic Neurons in Mice

Sile An, Xiang-Ning Li, Lei Deng, Peilin Zhao, Zhangheng Ding, Yutong Han, Yue Luo, Xin Liu, An-An Li, Q. Luo, Zhao Feng, Hui Gong

Frontiers in Neuroanatomy

2021

Constructing the rodent stereotaxic brain atlas: a survey

Zhao Feng, An-An Li, Hui Gong, Q. Luo

Science China Life Sciences

2021

Single-cell morphological characterization of CRH neurons throughout the whole mouse brain

Yu Wang, Pu Hu, Qing-Hong Shan, Chuan Huang, Zhaohuan Huang, Peng Chen, An-An Li, Hui Gong, Jiang-Ning Zhou

BMC Biology

2021

Morphological diversity of single neurons in molecularly defined cell types

Hanchuan Peng, Peng Xie, Lijuan Liu, Xiu-Li Kuang, Yi-Min Wang, Lei Qu, Hui Gong, Shengdian Jiang, An-An Li, Zong-Cai Ruan, Liya Ding, Z. Yao, Chao Chen, Meng-Ya Chen, T. Daigle, R. Dalley, Zhang-Can Ding, Yan-Jun Duan, Aaron Feiner, Ping He, Chris Hill, Karla E. Hirokawa, Guo-Dong Hong, Lei Huang, S. Kebede, Hsien-Chi Kuo, Rachael Larsen, Phil Lesnar, Long-Fei Li, Qi Li, Xiang-Ning Li, Yao-Yao Li, Yuan-Yuan Li, An Liu, Donghuan Lu, Stephanie Mok, Lydia Ng, T. Nguyen, Q. Ouyang, Jin Pan, E. Shen, Yuanyuan Song, S. Sunkin, Bosiljka Tasic, M. Veldman, Wayne Wakeman, Wan Wan, Peng Wang, Quanxin Wang, Tao Wang, Ya-Ping Wang, Feng Xiong, Wei Xiong, Wenjie Xu, Min Ye, L. Yin, Yang Yu, Jian-Lu Yuan, Jing Yuan, Zhi-Xi Yun, Shaoqun Zeng, Shi-Chen Zhang, Sujun Zhao, Zi-Jun Zhao, Zhi Zhou, Z. J. Huang, Luke Esposito, M. Hawrylycz, S. Sorensen, X. W. Yang, Ye-Feng Zheng, Zhong-Ze Gu, Wei Xie, Christof Koch, Q. Luo, Julie A. Harris, Yun Wang, Hongkui Zeng

Nature

2021

MT volume 29 issue 6 Cover and Front matter

An-An Li, Hui Gong, Bin Zhang, Qing-Di Wang, Cheng Yan, Jingpeng Wu, Qian Liu, Shaoqun Zeng, Q. Luo

Microscopy Today

2021

Plastic embedding for precise imaging of large-scale biological tissues labeled with multiple fluorescent dyes and proteins.

Miao Ren, Jiaojiao Tian, Qing-Tao Sun, Si-Qi Chen, Ting Luo, Xue-Yan Jia, Tao Jiang, Q. Luo, Hui Gong, Xiang-Ning Li

Biomedical Optics Express

2021

Continuous subcellular resolution three-dimensional imaging on intact macaque brain.

Can Zhou, Xiao-Quan Yang, Shihao Wu, Qiuyuan Zhong, Ting Luo, An-An Li, Guang-Cai Liu, Qing-Tao Sun, P. Luo, Lei Deng, Hong Ni, Chao-Zhen Tan, Jing Yuan, Qing-Ming Luo, Xintian Hu, Xiang-Ning Li, Hui Gong

Science Bulletin

2021

Cross-modal coherent registration of whole mouse brains

Lei Qu, Yuan-Yuan Li, Peng Xie, Lijuan Liu, Yi-Min Wang, Jun Wu, Yu Liu, Tao Wang, Long-Fei Li, Kaixuan Guo, Wan Wan, Lei OuYang, Feng Xiong, Anna C. Kolstad, Zhu-Hao Wu, Fang-Ming Xu, Ye-Feng Zheng, Hui Gong, Qing Luo, Guo-Fang Bi, Hong-wei Dong, M. Hawrylycz, Hongkui Zeng, Hanchuan Peng

Nature Methods

2021

MT volume 29 issue 3 Cover and Front matter

Joseba Martínez-López, Kavli Awardee, O. Krivanek, An-An Li, Hui Gong, Bin Zhang, Qing-Di Wang, Cheng Yan, Jingpeng Wu, Qian Liu, Shaoqun Zeng, Q. Luo

Microscopy Today

2021

Preparation of long single-strand DNA concatemers for high-level fluorescence in situ hybridization

Dongjian Cao, Sa Wu, Caili Xi, Dong Li, Kai-Heng Zhu, Zhihong Zhang, Hui Gong, Qing-Ming Luo, Jie Yang

Communications Biology

2021

Whole-Brain Reconstruction of Neurons in the Ventral Pallidum Reveals Diverse Projection Patterns

Qiru Feng, Sile An, Rui-Yu Wang, R. Lin, An-An Li, Hui Gong, Min-Min Luo

Frontiers in Neuroanatomy

2020

Chemical sectioning fluorescence tomography: high-throughput, high-contrast, multicolor, whole-brain imaging at subcellular resolution.

Xiaojun Wang, H. Xiong, Yu-Rong Liu, Tao Yang, An-An Li, Fei Huang, Fangfang Yin, L. Su, Ling Liu, Ning Li, Longhui Li, Sheng-Hua Cheng, Xiao-Xiang Liu, Xiao-Hua Lv, Xiu-Li Liu, Jun Chu, Tong-Hui Xu, Fu-Qiang Xu, Hui Gong, Q. Luo, Jing Yuan, Shaoqun Zeng

Cell Reports

2020

MACS: Rapid Aqueous Clearing System for 3D Mapping of Intact Organs

Jing-Tan Zhu, Tingting Yu, Yu-Sha Li, Jian-Yi Xu, Yisong Qi, Yingtao Yao, Yilin Ma, Peng Wan, Zhilong Chen, Xiangning Li, Hui Gong, Q. Luo, Dan Zhu

Advancement of science

2020

Anatomically revealed morphological patterns of pyramidal neurons in layer 5 of the motor cortex

Siqi Jiang, Yue Guan, Shangbin Chen, Xue-Yan Jia, Hong Ni, Yalun Zhang, Yutong Han, Xue Peng, Can Zhou, An-An Li, Q. Luo, Hui Gong

Scientific Reports

2020

Mapping the Architecture of Ferret Brains at Single-Cell Resolution

Ben Long, Tao Jiang, Jianmin Zhang, Si-Qi Chen, Xue-Yan Jia, Xiaofeng Xu, Q. Luo, Hui Gong, An-An Li, Xiang-Ning Li

Frontiers in Neuroscience

2020

Ventral Hippocampal-Prefrontal Interaction Affects Social Behavior via Parvalbumin Positive Neurons in the Medial Prefrontal Cortex

Qing-Tao Sun, Xiang-Ning Li, An-An Li, Jianping Zhang, Zhangheng Ding, Hui Gong, Q. Luo

iScience

2020

High-throughput optical sectioning via line-scanning imaging with digital structured modulation.

Qiuyuan Zhong, Chenyu Jiang, Dejie Zhang, Si-Qi Chen, Rui Jin, Hui Gong, Jing Yuan

Optics Letters

2020

GTree: an Open-source Tool for Dense Reconstruction of Brain-wide Neuronal Population

Hang Zhou, Shiwei Li, An-An Li, Qing Huang, Feng Xiong, Ning Li, Jiacheng Han, Hongtao Kang, Yijun Chen, Yun Li, Huimin Lin, Yu-Hui Zhang, Xiao-Hua Lv, Xiu-Li Liu, Hui Gong, Q. Luo, Shaoqun Zeng, T. Quan

Neuroinformatics

2020

Reconstruction of the Hypothalamo-Neurohypophysial System and Functional Dissection of Magnocellular Oxytocin Neurons in the Brain

Bin Zhang, Liyao Qiu, W. Xiao, Hong Ni, Lunhao Chen, Fan Wang, Wei-Hao Mai, Jin-Tao Wu, A. Bao, Hai-Lan Hu, Hui Gong, S. Duan, An-An Li, Zhihua Gao

bioRxiv

2020

Whole-brain connectivity atlas of glutamatergic and GABAergic neurons in mouse dorsal and median raphe nucleus

Zheng-Chao Xu, Zhao Feng, Meng-Ting Zhao, Qing-Tao Sun, Lei Deng, Xue-Yan Jia, Tao Jiang, Pan Luo, Wu Chen, Jing Yuan, Xiang-Ning Li, Hui Gong, Q. Luo, An-An Li

bioRxiv

2020

Continuous imaging of large-volume tissues with a machinable optical clearing method at subcellular resolution.

Can Zhou, Ting Zheng, Ting Luo, Cheng Yan, Qing-Tao Sun, Miao Ren, Peilin Zhao, Wu Chen, Bingqing Ji, Zhi Wang, An-An Li, Hui Gong, Xiang-Ning Li

Biomedical Optics Express

2020

Whole-Brain Three-Dimensional Profiling Reveals Brain Region Specific Axon Vulnerability in 5xFAD Mouse Model

Jianping Zhang, Ben Long, An-An Li, Qing-Tao Sun, Jiaojiao Tian, Ting Luo, Zhangheng Ding, Hui Gong, Xiang-Ning Li

Frontiers in Neuroanatomy

2020

Scalable Resin Embedding Method for Large-Volume Brain Tissues with High Fluorescence Preservation Capacity

Ting Luo, Lei Deng, An-An Li, Can Zhou, Shuai Shao, Qing-Tao Sun, Hui Gong, Xiao-Quan Yang, Xiang-Ning Li

iScience

2020

Cellular anatomy of the mouse primary motor cortex

Rodrigo Muñoz-Castañeda, Brian Zingg, K. Matho, Xiao-Yin Chen, Quanxin Wang, Nicholas N. Foster, An-An Li, Arun Narasimhan, Karla E. Hirokawa, Bing-Xing Huo, S. Bannerjee, L. Korobkova, C. Park, Young-Gyun Park, M. Bienkowski, U. Chon, D. W. Wheeler, Xiang-Ning Li, Yun Wang, M. Naeemi, Peng Xie, Lijuan Liu, Kathleen Kelly, Xu An, Sarojini M. Attili, Ian Bowman, Anastasiia Bludova, Ali H. Cetin, Liya Ding, R. Drewes, Florence D. D'Orazi, Corey Elowsky, Stephan Fischer, William Galbavy, Le Gao, J. Gillis, Peter A. Groblewski, Lin Gou, Joel D. Hahn, Joshua T. Hatfield, Houri Hintiryan, Jun-Xiang J. Huang, H. Kondo, Xiu-Li Kuang, Phil Lesnar, Xu Li, Yao-Yao Li, Meng K. Lin, Darrick Lo, J. Mizrachi, Stephanie Mok, P. R. Nicovich, R. Palaniswamy, Jason Palmer, Xiaoli Qi, E. Shen, Yu-Chi Sun, H. Tao, Wayne Wakemen, Yi-Min Wang, Shen-Qin Yao, Jing Yuan, Hui-Qing Zhan, Mu-Ye Zhu, Lydia Ng, Li I. Zhang, Byung Kook Lim, M. Hawrylycz, Hui Gong, J. Gee, Yongsoo Kim, Kwanghun Chung, X. W. Yang, Hanchuan Peng, Q. Luo, P. Mitra, A. Zador, Hongkui Zeng, G. Ascoli, Z. J. Huang, P. Osten, Julie A. Harris, Hong-wei Dong

Nature

2020

Paraffin-embedding for large volume bio-tissue

Zhan-Mu Ouyang, Xiao-Ying Yang, Hui Gong, Xiang-Ning Li

Scientific Reports

2020

DeepMapi: a Fully Automatic Registration Method for Mesoscopic Optical Brain Images Using Convolutional Neural Networks

Hong Ni, Zhao Feng, Yue Guan, Xue-Yan Jia, Wu Chen, Tao Jiang, Qiuyuan Zhong, Jing Yuan, Miao Ren, Xiang-Ning Li, Hui Gong, Q. Luo, An-An Li

Neuroinformatics

2020

A Whole-brain Map of Long-range Inputs to GABAergic Interneurons in the Mouse Caudal Forelimb Area

Zhuonan Duan, An-An Li, Hui Gong, Xiang-Ning Li

Neuroscience Bulletin

2020

A multimodal cell census and atlas of the mammalian primary motor cortex

E. Callaway, Hong-wei Dong, J. Ecker, Mike Hawrylycz, Z. J. Huang, E. Lein, J. Ngai, P. Osten, B. Ren, A. Tolias, O. White, Hongkui Zeng, X. Zhuang, G. Ascoli, M. Behrens, J. Chun, G. Feng, J. Gee, Satrajit S. Ghosh, Yaroslav O. Halchenko, R. Hertzano, Byung Kook Lim, M. Martone, Lydia Ng, L. Pachter, A. Ropelewski, T. Tickle, X. W. Yang, Kun Zhang, Trygve E Bakken, Philipp Berens, T. Daigle, Julie A. Harris, Nikolas L. Jorstad, B. Kalmbach, D. Kobak, Y. Li, Hanqing Liu, K. Matho, E. Mukamel, M. Naeemi, F. Scala, Pengcheng Tan, Jonathan T. Ting, Fang-Ming Xie, Meng Zhang, Zhu-Zhu Zhang, Jing-Tian Zhou, Brian Zingg, Ethan J. Armand, Z. Yao, Darren Bertagnolli, Tamara Casper, Kirsten Crichton, Nick Dee, Diep Dinh, Song-Lin Ding, Weixiu Dong, Elizabeth L. Dougherty, Olivia Fong, Melissa Goldman, Jeff Goldy, R. Hodge, Li-Juan Hu, C. Keene, F. Krienen, Matthew Kroll, B. Lake, K. Lathia, S. Linnarsson, Christine S. Liu, E. Macosko, S. Mccarroll, D. McMillen, Naeem M. Nadaf, T. Nguyen, Carter R. Palmer, Thanh Pham, Nongluk Plongthongkum, Nora M. Reed, A. Regev, Christine Rimorin, W. Romanow, Steven Savoia, K. Siletti, Kimberly A. Smith, J. Sulc, Bosiljka Tasic, Michael Tieu, A. Torkelson, Herman Tung, C. V. van Velthoven, C. Vanderburg, A. Yanny, Rong-Xin Fang, Xiao-Meng Hou, J. Lucero, Julia K. Osteen, A. Pinto-Duarte, Olivier B. Poirion, Sebastian Preissl, Xinxin Wang, Andrew I. Aldridge, Anna Bartlett, Lara Boggeman, Carolyn O'Connor, R. Castanon, Hua-Ming Chen, Conor Fitzpatrick, C. Luo, J. Nery, M. Nunn, Angeline C. Rivkin, Wei-ping Tian, B. Dominguez, Tony Ito-Cole, Matthew W. Jacobs, Xin Jin, Cheng-Ta Lee, Kuo-Fen Lee, P. A. Miyazaki, Yan Pang, Mohammad S. Rashid, J. Smith, Minh Vu, Elora W. Williams, Tommasso Biancalani, A. S. Booeshaghi, M. Crow, S. Dudoit, Stephan Fischer, J. Gillis, Qiwen Hu, P. Kharchenko, Sheng-Yong Niu, V. Ntranos, E. Purdom, D. Risso, Hector Roux de Bézieux, Saroja Somasundaram, Kelly Street, V. Svensson, E. D. Vaishnav, K. Van den Berge, Joshua D. Welch, Xu An, Helen S. Bateup, Ian Bowman, Rebecca K. Chance, Nicholas N. Foster, William Galbavy, Hui Gong, Lin Gou, Joshua T. Hatfield, Houri Hintiryan, Karla E. Hirokawa, Gukhan Kim, Daniel J. Kramer, An-An Li, Xiang-Ning Li, Q. Luo, Rodrigo Muñoz-Castañeda, David A. Stafford, Zhao Feng, Xue-Yan Jia, Shengdian Jiang, Tao Jiang, Xiu-Li Kuang, Rachael Larsen, Phil Lesnar, Yao-Yao Li, Yuan-Yuan Li, Lijuan Liu, Hanchuan Peng, Lei Qu, Miao Ren, Zong-Cai Ruan, E. Shen, Yuanyuan Song, Wayne Wakeman, Peng Wang, Yi-Min Wang, Yun Wang, L. Yin, Jing Yuan, Sujun Zhao, Xuan Zhao, Arun Narasimhan, R. Palaniswamy, Samik Banerjee, Liya Ding, Dhananjay Huilgol, Bing-Xing Huo, H. Kuo, S. Laturnus, Xu Li, P. Mitra, J. Mizrachi, Quanxin Wang, Peng Xie, Feng Xiong, Yang Yu, Stephen W. Eichhorn, J. Berg, Matteo Bernabucci, Yves Bernaerts, C. Cadwell, J. Castro, R. Dalley, L. Hartmanis, G. Horwitz, Xiao-Long Jiang, A. Ko, Elanine Miranda, S. Mulherkar, P. R. Nicovich, Scott F. Owen, R. Sandberg, S. Sorensen, Z. Tan, Shona Allen, Dirk Hockemeyer, A. Lee, M. Veldman, R. S. Adkins, S. Ament, H. C. Bravo, Robert Carter, Apaala Chatterjee, C. Colantuoni, Jonathan Crabtree, H. Creasy, V. Felix, M. Giglio, Brian R. Herb, Jayaram Kancherla, Anup A. Mahurkar, Carrie McCracken, L. Nickel, Dustin Olley, J. Orvis, Mike Schor, Greg Hood, B. Dichter, M. Grauer, Brian Helba, A. Bandrowski, Nikolaos Barkas, Benjamin Carlin, Florence D. D'Orazi, K. Degatano, Tom Gillespie, Farzaneh Khajouei, K. Konwar, C. Thompson, Kathleen Kelly, Stephanie Mok, S. Sunkin

Nature

2020

DeepBrainSeg: Automated Brain Region Segmentation for Micro-Optical Images With a Convolutional Neural Network

Chao-Zhen Tan, Yue Guan, Zhao Feng, Hong Ni, Zou-Tao Zhang, Zhiguang Wang, Xiang-Ning Li, Jing Yuan, Hui Gong, Q. Luo, An-An Li

Frontiers in Neuroscience

2020

Skeleton optimization of neuronal morphology based on three-dimensional shape restrictions

Siqi Jiang, Zhengyu Pan, Zhao Feng, Yue Guan, Miao Ren, Zhangheng Ding, Shangbin Chen, Hui Gong, Q. Luo, An-An Li

BMC Bioinformatics

2020

Long-range inputome of cortical neurons containing corticotropin-releasing hormone

Peilin Zhao, Meng-Ting Zhao, Huading Wang, Tao Jiang, Xue-Yan Jia, Jiaojiao Tian, An-An Li, Hui Gong, Xiang-Ning Li

Scientific Reports

2019

Three-dimensional quantitative analysis of amyloid plaques in the whole brain with high voxel resolution

Ben Long, Xiang-Ning Li, Jianping Zhang, Si-Qi Chen, Wenwei Li, Qiuyuan Zhong, An-An Li, Hui Gong, Q. Luo

Scientia Sinica Vitae

2019

Amyloid β oligomers constrict human capillaries in Alzheimer’s disease via signaling to pericytes

R. Nortley, Nils Korte, P. Izquierdo, Chanawee Hirunpattarasilp, Anusha Mishra, Z. Jaunmuktane, V. Kyrargyri, Thomas Pfeiffer, Lila Khennouf, C. Madry, Hui Gong, A. Richard-Loendt, Wen-Hui Huang, T. Saito, T. Saido, S. Brandner, H. Sethi, D. Attwell

Science

2019

Brain-Wide Shape Reconstruction of a Traced Neuron Using the Convex Image Segmentation Method

Shiwei Li, T. Quan, Hang Zhou, Qing Huang, Tao Guan, Yijun Chen, Cheng Xu, Hongtao Kang, An-An Li, L. Fu, Q. Luo, Hui Gong, Shaoqun Zeng

Neuroinformatics

2019

On-line optical clearing method for whole-brain imaging in mice.

Hao Wu, Xiao-Quan Yang, Si-Qi Chen, Liuyun Zhang, Ben Long, Chao-Zhen Tan, Jing Yuan, Hui Gong

Biomedical Optics Express

2019

Automated Brain Region Segmentation for Single Cell Resolution Histological Images Based on Markov Random Field

Xiaofeng Xu, Yue Guan, Hui Gong, Zhao Feng, Wenjuan Shi, An-An Li, Miao Ren, Jing Yuan, Q. Luo

Neuroinformatics

2019

Review of advances and prospects in neuron reconstruction

Shiwei Li, T. Quan, Hang Zhou, An-An Li, L. Fu, Hui Gong, Q. Luo, Shaoqun Zeng

Chinese Science Bulletin

2019

Optimization of Traced Neuron Skeleton Using Lasso-Based Model

Shiwei Li, T. Quan, Cheng Xu, Qing Huang, Hongtao Kang, Yijun Chen, An-An Li, L. Fu, Q. Luo, Hui Gong, Shaoqun Zeng

Frontiers in Neuroanatomy

2019

Challenges of Processing and Analyzing Big Data in Mesoscopic Whole-brain Imaging

An-An Li, Yue Guan, Hui Gong, Q. Luo

Genomics, Proteomics & Bioinformatics

2019

FDISCO: Advanced solvent-based clearing method for imaging whole organs

Yisong Qi, Tingting Yu, Jian-Yi Xu, Peng Wan, Yilin Ma, Jing-Tan Zhu, Yu-Sha Li, Hui Gong, Q. Luo, Dan Zhu

Science Advances

2019

Maintenance of Fluorescence During Paraffin Embedding of Fluorescent Protein-Labeled Specimens

Zhan-Mu Ouyang, Peilin Zhao, Yang Yang, Xiao-Quan Yang, Hui Gong, Xiang-Ning Li

Frontiers in Neuroscience

2019

A whole-brain map of long-range inputs to GABAergic interneurons in the mouse medial prefrontal cortex

Qing-Tao Sun, Xiang-Ning Li, Miao Ren, Meng-Ting Zhao, Qiuyuan Zhong, Yuqi Ren, Pan Luo, Hong Ni, Xiaoyu Zhang, Chen Zhang, Jing Yuan, An-An Li, Min-Min Luo, Hui Gong, Q. Luo

Nature Neuroscience

2019

Pinpointing Morphology and Projection of Excitatory Neurons in Mouse Visual Cortex

Yalun Zhang, Siqi Jiang, Zheng-Chao Xu, Hui Gong, An-An Li, Q. Luo, Miao Ren, Xiang-Ning Li, Hao Wu, Jing Yuan, Shangbin Chen

Frontiers in Neuroscience

2019

High-resolution mapping of brain vasculature and its impairment in the hippocampus of Alzheimer's disease mice

Xiaochuan Zhang, Xian-Zhen Yin, Jing-Jing Zhang, An-An Li, Hui Gong, Q. Luo, Hai-Yan Zhang, Zhao-Bing Gao, Hualiang Jiang

National Science Review

2019

Review of micro-optical sectioning tomography (MOST): technology and applications for whole-brain optical imaging [Invited].

Ting Zheng, Zhao Feng, Xiaojun Wang, Tao Jiang, Rui Jin, Peilin Zhao, Ting Luo, Hui Gong, Q. Luo, Jing Yuan

Biomedical Optics Express

2019

Genetic Single Neuron Anatomy Reveals Fine Granularity of Cortical Axo-Axonic Cells

Xiaojun Wang, J. Tucciarone, Siqi Jiang, Fangfang Yin, Bor-Shuen Wang, Dingkang Wang, Y. Jia, Xue-Yan Jia, Yuxin Li, Tao Yang, Zheng-Chao Xu, Masood Ahmed Akram, Yu-Su Wang, Shaoqun Zeng, G. Ascoli, P. Mitra, Hui Gong, Q. Luo, Z. J. Huang

Cell Reports

2019

DeepBouton: Automated Identification of Single-Neuron Axonal Boutons at the Brain-Wide Scale

Sheng-Hua Cheng, Xiaojun Wang, Yu-Rong Liu, L. Su, T. Quan, Ning Li, Fangfang Yin, Feng Xiong, Xiaomao Liu, Q. Luo, Hui Gong, Shaoqun Zeng

Front. Neuroinform.

2019

Identifying Weak Signals in Inhomogeneous Neuronal Images for Large-Scale Tracing of Sparsely Distributed Neurites

Shiwei Li, T. Quan, Hang Zhou, Fangfang Yin, An-An Li, L. Fu, Q. Luo, Hui Gong, Shaoqun Zeng

Neuroinformatics

2019

RecV recombinase system for in vivo targeted optogenomic modifications of single cells or cell populations

Shen-Qin Yao, Peng Yuan, Ben Ouellette, Thomas Zhou, M. Mortrud, P. Balaram, S. Chatterjee, Yun Wang, T. Daigle, Bosiljka Tasic, Xiu-Li Kuang, Hui Gong, Q. Luo, Shaoqun Zeng, A. Curtright, A. Dhaka, A. Kahan, V. Gradinaru, R. Chrapkiewicz, M. Schnitzer, Hongkui Zeng, Ali H. Cetin

Nature Methods

2019

Whole Brain Mapping of Long-Range Direct Input to Glutamatergic and GABAergic Neurons in Motor Cortex

P. Luo, An-An Li, Yanxiao Zheng, Yutong Han, Jiaojiao Tian, Zheng-Chao Xu, Hui Gong, Xiang-Ning Li

Frontiers in Neuroanatomy

2018

Brain ischemic insult induces cofilin rod formation leading to synaptic dysfunction in neurons

L. Shu, Ben Chen, Bin Chen, Hai Xu, Guoxiang Wang, Yian Huang, Ying-Ya Zhao, Hui Gong, Min Jiang, Li-Dian Chen, Xu Liu, Yun Wang

Journal of Cerebral Blood Flow and Metabolism

2018

A Robust Image Registration Interface for Large Volume Brain Atlas

Hong Ni, Chao-Zhen Tan, Zhao Feng, Shangbin Chen, Zou-Tao Zhang, Wenwei Li, Yue Guan, Hui Gong, Q. Luo, An-An Li

Scientific Reports

2018

Simultaneous Acquisition of Multicolor Information From Neural Circuits in Resin-Embedded Samples

Miao Ren, Jiaojiao Tian, Peilin Zhao, Jialiang Luo, Zhao Feng, Hui Gong, Xiang-Ning Li

Frontiers in Neuroscience

2018

RTF: a rapid and versatile tissue optical clearing method

Tingting Yu, Jing-Tan Zhu, Yu-Sha Li, Yilin Ma, Jianru Wang, Xin-Ran Cheng, Sen Jin, Qing-Tao Sun, Xiangning Li, Hui Gong, Q. Luo, Fu-Qiang Xu, Shan-Ting Zhao, Dan Zhu

Scientific Reports

2018

Simultaneous acquisition of neuronal morphology and cytoarchitecture in the same Golgi-stained brain.

Xiao Chen, Xiaoyu Zhang, Qiuyuan Zhong, Qing-Tao Sun, Jie Peng, Hui Gong, Jing Yuan

Biomedical Optics Express

2018

Cryo-micro-optical sectioning tomography for label-free brainwide visualization of senile plaque (Conference Presentation)

Yi-Lin Luo, An-Le Wang, Mengmeng Liu, Tian Lei, Xiaochuan Zhang, Zhao-Bing Gao, Hua-Liang Liang, Hui Gong, Jing Yuan

2018

Optical clearing for multiscale biological tissues

Tingting Yu, Yisong Qi, Hui Gong, Q. Luo, Dan Zhu

Journal of Biophotonics

2018

A corticopontine circuit for initiation of urination

Ji-Wei Yao, Quan-Chao Zhang, Xiang Liao, Qian-Wei Li, Shan-Shan Liang, Xian-Ping Li, Yalun Zhang, Xiang-Ning Li, Haoyu Wang, Han Qin, Meng Wang, Jingcheng Li, Jian-Xiong Zhang, Wenjing He, Wen Zhang, Tong Li, Fu-Qiang Xu, Hui Gong, Hong-Bo Jia, Xiaohong Xu, Ju-Nan Yan, Xiao-Wei Chen

Nature Neuroscience

2018

Deep learning optical-sectioning method.

Xiaoyu Zhang, Yifan Chen, Kefu Ning, Can Zhou, Yutong Han, Hui Gong, Jing Yuan

Optics Express

2018

Resin/HM20 Embedding and fMOST Imaging Protocol v1

Hui Gong, Xiang-Ning Li, Can Zhou

protocols.io

2018

Advanced NeuroGPS-Tree achieves brain-wide reconstruction of neuronal population equal to manual reconstruction level (Conference Presentation)

T. Quan, Hang Zhou, Shiwei Li, Q. Luo, Hui Gong, An-An Li, Shaoqun Zeng

2018

Cell-type-specific and projection-specific brain-wide reconstruction of single neurons

Rui Lin, Rui-Yu Wang, Jing Yuan, Qiru Feng, Youtong Zhou, Shaoqun Zeng, Miao Ren, Siqi Jiang, Hong Ni, Can Zhou, Hui Gong, Min-Min Luo

Nature Methods

2017

Precise Cerebral Vascular Atlas in Stereotaxic Coordinates of Whole Mouse Brain

Benyi Xiong, An-An Li, Yang Lou, Shangbin Chen, Ben Long, Jie Peng, Zhongqin Yang, Tong-Hui Xu, Xiao-Quan Yang, Xiang-Ning Li, Tao Jiang, Q. Luo, Hui Gong

Frontiers in Neuroanatomy

2017

A Stereological Quantitative Analysis of the Brain-wide Distribution of SOM Neurons in Whole Mouse Brain

Chen Zhang, Cheng Yan, Miao Ren, An-An Li, T. Quan, Hui Gong, Jing Yuan

2017

Elevated-temperature-induced acceleration of PACT clearing process of mouse brain tissue

Tingting Yu, Yisong Qi, Jing-Tan Zhu, Jian-Yi Xu, Hui Gong, Q. Luo, Dan Zhu

Scientific Reports

2017

TDat: An Efficient Platform for Processing Petabyte-Scale Whole-Brain Volumetric Images

Yuxin Li, Hui Gong, Xiao-Quan Yang, Jing Yuan, Tao Jiang, Xiang-Ning Li, Qing-Tao Sun, Dan Zhu, Zhenyu Wang, Q. Luo, An-An Li

Front. Neural Circuits

2017

A Feature Point Based Registration of Brain Microscopic Images to the Reference Brain Atla s

Hong Ni, Shangbin Chen, Hui Gong, Q. Luo, An-An Li

2017

Scalable embedding method with hydrogel for optical imaging of fluorescent samples

Can Zhou, Luo Ting, Hui Gong, Xiang-Ning Li

2017

CNN-based Automatic Region Identification for Accelerating Whole Mouse Brain Imaging

Zhiguang Wang, Shangbin Chen, Hui Gong, Q. Luo, An-An Li

2017

Embedding and Chemical Reactivation of Green Fluorescent Protein in the Whole Mouse Brain for Optical Micro-Imaging

Ya-Dong Gang, Hongfu Zhou, Y. Jia, Ling Liu, Xiu-Li Liu, Gong Rao, Longhui Li, Xiaojun Wang, Xiao-Hua Lv, H. Xiong, Zhongqin Yang, Q. Luo, Hui Gong, Shaoqun Zeng

Frontiers in Neuroscience

2017

A Quantitative Analysis of the Distribution of CRH Neurons in Whole Mouse Brain

Jie Peng, Ben Long, Jing Yuan, Xue Peng, Hong Ni, Xiang-Ning Li, Hui Gong, Q. Luo, An-An Li

Frontiers in Neuroanatomy

2017

Early-stage reduction of the dendritic complexity in basolateral amygdala of a transgenic mouse model of Alzheimer's disease.

Congdi Guo, Ben Long, Ya-Rong Hu, Jing Yuan, Hui Gong, Xiang-Ning Li

Biochemical and Biophysical Research Communications - BBRC

2017

Hessian matrix-based structure tensor analysis for fiber enhancement and direction encoding

Shangbin Chen, Xiang-Ning Li, An-An Li, Jie Peng, Hui Gong, Q. Luo

2017

Three-dimensional bilateral filtering applying to de-noise of microscopic image stack

Yi Zhu, Yuxin Li, Hui Gong, Q. Luo, An-An Li

2017

Single-axon level morphological analysis of corticofugal projection neurons in mouse barrel field

Congdi Guo, Jie Peng, Yalun Zhang, An-An Li, Yuxin Li, Jing Yuan, Xiaofeng Xu, Miao Ren, Hui Gong, Shangbin Chen

Scientific Reports

2017

GRIN lens based high speed confocal system for deep brain calcium imaging

Z. Qi, Qing-Chun Guo, Qian Liu, Min Chen, Hui Gong, Shaoqun Zeng, Q. Luo, Min-Min Luo, L. Fu

2017

A Central Amygdala-Substantia Innominata Neural Circuitry Encodes Aversive Reinforcement Signals.

Yuting Cui, Guanghui Lv, Sen Jin, Jie Peng, Jing Yuan, Xiao-Bin He, Hui Gong, Fu-Qiang Xu, Tong-Hui Xu, Haohong Li

Cell Reports

2017

Interfacing Global Fiber Tracking for Optical Microscopy Imaging

Zhengyu Pan, Zheng-Chao Xu, Hui Gong, Q. Luo, An-An Li, Shangbin Chen

2017

High-throughput dual-color precision imaging for brain-wide mapping of the connectome with cytoarchitectonic landmarks at the cellular level (Conference Presentation)

Q. Luo, Hui Gong, Jing Yuan, Xiang-Ning Li, An-An Li, Tong-Hui Xu

BiOS

2017

ReagentTF: a rapid and versatile optical clearing method for biological imaging(Conference Presentation)

Tingting Yu, Jing-Tan Zhu, Yu-Sha Li, Yisong Qi, Jian-Yi Xu, Hui Gong, Q. Luo, Dan Zhu

BiOS

2017

Generation of a whole-brain atlas for the cholinergic system and mesoscopic projectome analysis of basal forebrain cholinergic neurons

Xiang-Ning Li, Bin Yu, Qing-Tao Sun, Yalun Zhang, Miao Ren, Xiao-Yan Zhang, An-An Li, Jing Yuan, L. Madisen, Q. Luo, Hongkui Zeng, Hui Gong, Z. Qiu

Proceedings of the National Academy of Sciences of the United States of America

2017

Dual-mode Micro-Optical Sectioning Tomography for simultaneously acquiring Golgi-stained neuronal morphology with co-located cytoarchitecture in the same brain

Xiao Chen, Xiaoyu Zhang, Qiuyuan Zhong, Qing-Tao Sun, Jie Peng, Hui Gong, Jing Yuan

2017

3D Affine Registration of Large Image Stack for High-Resolution Brain Imaging Techniques

Chao-Zhen Tan, Zhao Feng, Hong Ni, Yuxin Li, Hui Gong, Q. Luo, An-An Li

2017

Automatic Collection of Paraffin-embedded Tissue Sections

Tan Lu, Hao Wu, Zhan-Mu Ouyang, Ben Long, Xiao-Quan Yang, Jing Yuan, Xiang-Ning Li, Hui Gong, Q. Luo

2017

Advanced NeuroGPS-Tree achieves brain-wide reconstruction of neuronal population

Hang Zhou, Shiwei Li, Ning Li, Ya-Dong Gang, Q. Luo, Hui Gong, Shaoqun Zeng, An-An Li, T. Quan

2017

Development of a plastic embedding method for preservation of red fluorescent protein

Miao Ren, Jiaojiao Tian, Yang Yang, Hui Gong, Xiang-Ning Li

2017

Dense reconstruction of brain-wide neuronal population close to the ground truth

Hang Zhou, Shiwei Li, An-An Li, Feng Xiong, Ning Li, Jiacheng Han, Hongtao Kang, Yijun Chen, Yun Li, Wenqian Fang, Yidong Liu, Huimin Lin, Sen Jin, Zhiming Li, Fu-Qiang Xu, Yu-Hui Zhang, Xiao-Hua Lv, Xiu-Li Liu, Hui Gong, Q. Luo, T. Quan, Shao-Qun Zeng

bioRxiv

2017

A platform for efficient identification of molecular phenotypes of brain-wide neural circuits

Tao Jiang, Ben Long, Hui Gong, Tong-Hui Xu, Xiang-Ning Li, Zhuonan Duan, An-An Li, Lei Deng, Qiuyuan Zhong, Xue Peng, Jing Yuan

Scientific Reports

2017

Label-free brainwide visualization of senile plaque using cryo-micro-optical sectioning tomography.

Yi-Lin Luo, An-Le Wang, Mengmeng Liu, Tian Lei, Xiaochuan Zhang, Zhao-Bing Gao, Hualiang Jiang, Hui Gong, Jing Yuan

Optics Letters

2017

3D visualization of the ascending pathway of motor nucleus with viral infection and fluorescent imaging

Ben Long, Tao Jiang, Jing Yuan, Xiang-Ning Li, Hui Gong

2017

Parallel Implementation of 2D Structure Tensor for High Resolution Brain Imaging

Shangbin Chen, An-An Li, Chao-Zhen Tan, Jie Peng, Hui Gong, Q. Luo

2017

A platform for stereological quantitative analysis of the brain-wide distribution of type-specific neurons

Chen Zhang, Cheng Yan, Miao Ren, An-An Li, T. Quan, Hui Gong, Jing Yuan

Scientific Reports

2017

A simple, rapid method to precisely locate mRNAs of intact mouse brain via fluorescence tomography

Wenyan Guo, Xiu-Li Liu, Ya-Dong Gang, Fangfang Yin, Pei Li, Huang Fei, Li Ning, Qi Zhang, Xuyin Li, Y. Jia, Feng Xiong, Xiaojun Wang, Hui Gong, Q. Luo, Shaoqun Zeng

2017

Chemical reactivation of resin-embedded pHuji adds red for simultaneous two-color imaging with EGFP.

Wenyan Guo, Xiu-Li Liu, Yu-Rong Liu, Ya-Dong Gang, Xiao-Bin He, Y. Jia, Fangfang Yin, Pei Li, Fei Huang, Hongfu Zhou, Xiaojun Wang, Hui Gong, Q. Luo, Fu-Qiang Xu, Shaoqun Zeng

Biomedical Optics Express

2016

Fully-automatic liquid mixing and changing device

Shaoqun Zeng, Ning Li, Hui Gong, Fei Huang, Ya-Dong Gang, Gong Rao, Ke Bai

2016

An Automatic Method for Nucleus Boundary Segmentation Based on a Closed Cubic Spline

Zhao Feng, An-An Li, Hui Gong, Q. Luo

Front. Neuroinform.

2016

Direct 3D Analyses Reveal Barrel-Specific Vascular Distribution and Cross-Barrel Branching in the Mouse Barrel Cortex.

Jingpeng Wu, Congdi Guo, Shangbin Chen, Tao Jiang, Yong He, Wenxiang Ding, Zhongqin Yang, Q. Luo, Hui Gong

Cerebral Cortex

2016

Chemical sectioning: high throughput imaging brain networks ex vivo at synaptic resolution

H. Xiong, T. Yang, L. Su, A. Li, S. Jin, Z. Shang, Y. Jia, K. Huang, Xiao-Hua Lv, S. Li, Yan Li, N. Li, L. Liu, T. Xu, F. Xu, Hui Gong, Shaoqun Zeng, Qing-Ming Luo

2016

Rapid and prodium iodide-compatible optical clearing method for brain tissue based on sugar/sugar-alcohol

Tingting Yu, Yisong Qi, Jianru Wang, Wei Feng, Jian-Yi Xu, Jing-Tan Zhu, Yingtao Yao, Hui Gong, Q. Luo, Dan Zhu

Journal of Biomedical Optics

2016

Skull Optical Clearing Solution for Enhancing Ultrasonic and Photoacoustic Imaging

Xiao-Quan Yang, Yang Zhang, K. Zhao, Yan-Jie Zhao, Yanyan Liu, Hui Gong, Q. Luo, Dan Zhu

IEEE Transactions on Medical Imaging

2016

Fast whole-brain optical tomography capable of automated slice-collection (Conference Presentation)

Jing Yuan, Tao Jiang, Lei Deng, Ben Long, Jie Peng, Q. Luo, Hui Gong

SPIE BiOS

2016

Accelerating Sectioning-Based Whole-Brain Imaging by Realtime Contour Recognition of Cytoarchitecture

Xiaoyu Zhang, Qiuyuan Zhong, Jing Yuan, Hui Gong, Q. Luo

Asia Communications and Photonics conference and Exhibition

2016

High-throughput dual-colour precision imaging for brain-wide connectome with cytoarchitectonic landmarks at the cellular level

Hui Gong, Dongli Xu, Jing Yuan, Xiang-Ning Li, Congdi Guo, Jie Peng, Yuxin Li, L. Schwarz, An-An Li, Bihe Hu, Benyi Xiong, Qing-Tao Sun, Yalun Zhang, Jiepeng Liu, Qiuyuan Zhong, Tong-Hui Xu, Shaoqun Zeng, Q. Luo

Nature Communications

2016

SparseTracer: the Reconstruction of Discontinuous Neuronal Morphology in Noisy Images

Shiwei Li, Hang Zhou, T. Quan, Jing Li, Yuxin Li, An-An Li, Q. Luo, Hui Gong, Shaoqun Zeng

Neuroinformatics

2016

Optical Fiber based Methods for Deep Brain Calcium Signal Measurements in Behaving Mice

Qing-Chun Guo, Jingfeng Zhou, Qiru Feng, Rui Lin, Z. Qi, Hui Gong, Q. Luo, Shaoqun Zeng, Min-Min Luo, L. Fu

2015

Co-registration of diffusion tensor imaging and micro-optical imaging based on ants

Hong Ni, Miao Ren, Qiuyuan Zhong, Hui Gong, Q. Luo, Shangbin Chen

2015

Dual-slit confocal light sheet microscopy for in vivo whole-brain imaging of zebrafish.

Zhe Yang, Li Mei, Fei Xia, Q. Luo, L. Fu, Hui Gong

Biomedical Optics Express

2015

Reconstruction of micron resolution mouse brain surface from large-scale imaging dataset using resampling-based variational model

Jing Li, T. Quan, Shiwei Li, Hang Zhou, Q. Luo, Hui Gong, Shaoqun Zeng

Scientific Reports

2015

Visible rodent brain-wide networks at single-neuron resolution

Jing Yuan, Hui Gong, An-An Li, Xiang-Ning Li, Shangbin Chen, Shaoqun Zeng, Q. Luo

Frontiers in Neuroanatomy

2015

NeuroGPS-Tree: automatic reconstruction of large-scale neuronal populations with dense neurites

T. Quan, Hang Zhou, Jing Li, Shiwei Li, An-An Li, Yuxin Li, Xiao-Hua Lv, Q. Luo, Hui Gong, Shaoqun Zeng

Nature Methods

2015

iCut: an Integrative Cut Algorithm Enables Accurate Segmentation of Touching Cells

Yong He, Hui Gong, Benyi Xiong, Xiaofeng Xu, An-An Li, Tao Jiang, Qing-Tao Sun, Siming Wang, Q. Luo, Shangbin Chen

Scientific Reports

2015

Visible whole mouse brain at single neuron resolution

Hui Gong, Jing Yuan, An-An Li, Xiang-Ning Li, Q. Luo

2015

Multi-channel fiber photometry for population neuronal activity recording.

Qing-Chun Guo, Jingfeng Zhou, Qiru Feng, Rui Lin, Hui Gong, Q. Luo, Shaoqun Zeng, Min-Min Luo, L. Fu

Biomedical Optics Express

2015

Optimized optical clearing method for imaging central nervous system

Tingting Yu, Yisong Qi, Hui Gong, Q. Luo, Dan Zhu

Biomedical optics

2014

Fast and automatic imaging of immunoenzyme-stained neuronal circuits in the whole brain of Drosophila

Qingping Tian, Jing Yuan, Yuxin Li, Tao Jiang, Hui Gong, Wei Zhou

Journal of Biomedical Optics

2014

Correction: Refractory Period Modulates the Spatiotemporal Evolution of Cortical Spreading Depression: A Computational Study

Bing Li, Shangbin Chen, Peng-Cheng Li, Q. Luo, Hui Gong

PLoS ONE

2014

Chemical reactivation of quenched fluorescent protein molecules enables resin-embedded fluorescence microimaging

H. Xiong, Zhen-Qiao Zhou, Ming-Qiang Zhu, Xiao-Hua Lv, An-An Li, Shiwei Li, Longhui Li, Tao Yang, Siming Wang, Zhongqin Yang, Tong-Hui Xu, Q. Luo, Hui Gong, Shaoqun Zeng

Nature Communications

2014

An Automated Three-Dimensional Detection and Segmentation Method for Touching Cells by Integrating Concave Points Clustering and Random Walker Algorithm

Yong He, Yunlong Meng, Hui Gong, Shangbin Chen, Bin Zhang, Wenxiang Ding, Q. Luo, An-An Li

PLoS ONE

2014

Indian-Ink Perfusion Based Method for Reconstructing Continuous Vascular Networks in Whole Mouse Brain

Songchao Xue, Hui Gong, Tao Jiang, W. Luo, Yuan-Zheng Meng, Qian Liu, Shangbin Chen, An-An Li

PLoS ONE

2014

Technical considerations on confocal based fluorescence micro-optical sectioning tomography for visualizing brain circuits

Xiaoli Qi, Xiao-Hua Lv, H. Xiong, Cheng Yan, Jianling Chen, Hui Gong, Q. Luo, Shaoqun Zeng

Biomedical optics

2014

A method of extracting structural priors from images of micro-CT for fluorescence molecular tomography reconstruction

Yuan-Zheng Meng, Xiao-Quan Yang, Yong Deng, Xuanxuan Zhang, Hui Gong

Journal of X-Ray Science and Technology

2014

Device for acquiring multi-modal data of brain and application thereof

Q. Luo, Hui Gong, Ying Li, Lei Zhang, Peng-Cheng Li

2014

Refractory Period Modulates the Spatiotemporal Evolution of Cortical Spreading Depression: A Computational Study

Bing Li, Shangbin Chen, Peng-Cheng Li, Q. Luo, Hui Gong

PLoS ONE

2014

Digital reconstruction of the cell body in dense neural circuits using a spherical-coordinated variational model

T. Quan, Jing Li, Hang Zhou, Shiwei Li, Ting Zheng, Zhongqin Yang, Q. Luo, Hui Gong, Shaoqun Zeng

Scientific Reports

2014

Automatic detection and quantitative analysis of cells in the mouse primary motor cortex

Yunlong Meng, Yong He, Jingpeng Wu, Shangbin Chen, An-An Li, Hui Gong

Other Conferences

2014

3D BrainCV: Simultaneous visualization and analysis of cells and capillaries in a whole mouse brain with one-micron voxel resolution

Jingpeng Wu, Yong He, Zhongqin Yang, Congdi Guo, Q. Luo, Wei Zhou, Shangbin Chen, An-An Li, Benyi Xiong, Tao Jiang, Hui Gong

NeuroImage

2013

Visualization of brain circuits using two-photon fluorescence micro-optical sectioning tomography.

Ting Zheng, Zhongqin Yang, An-An Li, Xiao-Hua Lv, Zhen-Qiao Zhou, Xiaojun Wang, Xiaoli Qi, Shiwei Li, Q. Luo, Hui Gong, Shaoqun Zeng

Optics Express

2013

Rapid Reconstruction of 3D Neuronal Morphology from Light Microscopy Images with Augmented Rayburst Sampling

Ming Xing, An-An Li, Jingpeng Wu, Cheng Yan, Wenxiang Ding, Hui Gong, Shaoqun Zeng, Qian Liu

PLoS ONE

2013

NeuroGPS: automated localization of neurons for brain circuits using L1 minimization model

T. Quan, Ting Zheng, Zhongqin Yang, Wenxiang Ding, Shiwei Li, Jing Li, Hang Zhou, Q. Luo, Hui Gong, Shaoqun Zeng

Scientific Reports

2013

Fast optical sectioning obtained by structured illumination microscopy using a digital mirror device

Dongli Xu, Tao Jiang, An-An Li, Bihe Hu, Zhao Feng, Hui Gong, Shaoqun Zeng, Q. Luo

Journal of Biomedical Optics

2013

Automated and Accurate Detection of Soma Location and Surface Morphology in Large-Scale 3D Neuron Images

Cheng Yan, An-An Li, Bin Zhang, Wenxiang Ding, Q. Luo, Hui Gong

PLoS ONE

2013

Developing neuronal networks: Self-organized criticality predicts the future

J. Pu, Hui Gong, Xiangning Li, Q. Luo

Scientific Reports

2013

Improved detectability of neuronal connectivity on mechanical sectioning setup by using confocal detection.

Xiaoli Qi, H. Xiong, Xiao-Hua Lv, Jianling Chen, Hui Gong, Q. Luo, Shaoqun Zeng

Journal of Biomedical Optics

2013

Continuously tracing brain-wide long-distance axonal projections in mice at a one-micron voxel resolution

Hui Gong, Shaoqun Zeng, Cheng Yan, Xiao-Hua Lv, Zhongqin Yang, Tong-Hui Xu, Zhao Feng, Wenxiang Ding, Xiaoli Qi, An-An Li, Jingpeng Wu, Q. Luo

NeuroImage

2013

Assessing the effects of norepinephrine on single cerebral microvessels using optical-resolution photoacoustic microscope

Yanyan Liu, Xiao-Quan Yang, Hui Gong, Bo-Wen Jiang, Hui Wang, Guoqiang Xu, Yong Deng

Journal of Biomedical Optics

2008

生物医学光子学特色方向本科教学体系建设初探——以华中科技大学为个案

骆清铭,朱丹,曾绍群,龚辉,李鹏程,刘谦,赵元弟

《高等工程教育研究》

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