施超｜青岛科技大学｜学者主页

2026

Complete mitochondrial genomes of the two high-valued bromeliads: comparative genomics and evolutionary insights

Bingpu Wang, Peiyi Yang, Hao Wu, Hao Su, Guang‐Shun Li, Kexin Fan, Jing Yang, Shuo Wang, Chao Shi, Bing-yue Zhu

BMC Genomics

2026

General Biogeographic Rules and Lineage‐Specific History Shape the Assembly of Asian Tropical Megadiversity

Hao Wu, Bing-yue Zhu, Jing Yang, Qiang Zhang, Zhenqi Shi, Yan‐Jing Shi, Xi Chen, Peiqi Yang, Kemeng Fan, Guang‐Shun Li, Siqi Hu, Yee Wen Low, Chao Shi, Shuo Wang

Journal of Biogeography

DOI

2026

Comparative analysis of chloroplast genomes reveals molecular evolution and phylogenetic relationships in Styrax (Styracaceae)

Zhenyu Wu, Qiang Zhang, Bing-yue Zhu, Lanruo Mou, Jing Yang, Hui-Xia Gao, Zhenguang Shi, Chao Shi

BMC Plant Biology

DOI

2025

油果樟叶绿体基因组特征及系统进化分析

陆永杰，石文博，宋维才，施超

《青岛科技大学学报(自然科学版)》

DOI

2025

Comprehensive Chloroplast Genome Analysis of Four Callitriche (Plantaginaceae) Species for Phylogenetic and Conservation Insights

Zirui Zhang, Wenbo Shi, Siqi Hu, Lanruo Mou, Chao Shi, Bing-yue Zhu, Jing Yang

Horticulturae

DOI

2025

Complete mitochondrial genome of Houttuynia cordata sheds light on the evolution of complex structural features in early angiosperms

Yahui Huang, Bing-yue Zhu, Siqi Hu, Wenbo Shi, Yuxue Liu, Qianhui Lin, Shuo Wang, Jing Yang, Chao Shi

BMC Plant Biology

DOI

2024

Comparative analysis of complete chloroplast genomes of five Anemone species and phylogenetic analysis within Tribe Anemoneae (Ranunculaceae)

Siqi Hu, Wenbo Shi, Yahui Huang, Zirui Zhang, Qianhui Lin, Chao Shi

Journal of Plant Biochemistry and Biotechnology

DOI

2024

Protect native fish in China’s Yellow River

Xu Guo, Qianhui Lin, Xiangcheng Zheng, Shuo Wang, Qiao Li, Chao Shi

Science

DOI

2024

Exploring the chloroplast genomics, comparative analysis, evolution, and phylogenetic relationships of Phylica pubescens (Rhamnaceae) in the Cape Flora

Wenbo Shi, Yahui Huang, Siqi Hu, Huan Wang, Qianhui Lin, Zirui Zhang, Chao Shi, Shuo Wang

South African Journal of Botany

DOI

2023

Comparative chloroplast genome analyses of diverse Phoebe (Lauraceae) species endemic to China provide insight into their phylogeographical origin

Wenbo Shi, Wei-Cai Song, Zi-Lin Chen, Hao-hong Cai, Qin Gong, Jin Liu, Chao Shi, Shuo Wang

PeerJ

DOI

2022

Assembly and comparative analysis of the complete mitochondrial genome of three Macadamia species (M. integrifolia, M. ternifolia and M. tetraphylla)

Ying-Feng Niu, Yongjie Lu, Weicai Song, Xiyong He, Ziyan Liu, Cheng Chao Zheng, Shuo Wang, Chao Shi, Jin Liu

PLoS ONE

DOI

2021

The complete chloroplast genome sequence of Bromus catharticus Vahl. (Poaceae)

Li-Ying Feng, Chao Shi, Li-Zhi Gao

Mitochondrial DNA Part B: Resources

DOI

2021

The complete chloroplast genome sequence of Arundo formosana Hack. (Poaceae)

Li-Ying Feng, Chao Shi, Li-Zhi Gao

Mitochondrial DNA Part B: Resources

DOI

2020

Allocation of gene products to daughter cells is determined by the age of the mother in single Escherichia coli cells

Chao Shi, Lin Chao, Audrey Menegaz Proenca, Andrew Qiu, Jasper Chao, Camilla U. Rang

Proceedings Of The Royal Society B-Biological Sciences，Vol. 287, No. 19260

DOI

2020

Draft genomes of two outcrossing wild rice, Oryza rufipogon and O. longistaminata, reveal genomic features associated with mating‐system evolution

Wei Li, Qun-Jie Zhang, T. Zhu, Y. Tong, Kui Li, C. Shi, Yun Zhang, Yun-Long Liu, Jian-Jun Jiang, Yuan Liu, E. Xia, Hui Huang, Li-ping Zhang, Dan Zhang, Chao Shi, Wen-Kai Jiang, You-jie Zhao, Shu-Yan Mao, Jun-ying Jiao, Ping-Zhen Xu, Li-Li Yang, Li-Zhi Gao

Plant Direct

DOI

2020

Improved hybrid de novo genome assembly and annotation of African wild rice, Oryza longistaminata, from Illumina and PacBio sequencing reads

Wei Li, Kui Li, Qun-Jie Zhang, T. Zhu, Yun Zhang, C. Shi, Yun-Long Liu, E. Xia, Jian-Jun Jiang, Chao Shi, Li-ping Zhang, Hui Huang, Y. Tong, Yuan Liu, Dan Zhang, Yuan-Dang Zhao, Wen-Kai Jiang, You-jie Zhao, Shu-Yan Mao, Jun-ying Jiao, Ping-Zhen Xu, Li-Li Yang, Guo Yin, Li-Zhi Gao

The Plant Genome

DOI

2019

Complete plastid genome of Persea americana Mill. (Ebenales) and phylogenetic analysis

Jin Liu, L. Gong, Linjie Qi, Cheng Zheng, Ying-Feng Niu, Chao Shi

Mitochondrial DNA Part B: Resources

DOI

2019

The complete chloroplast genome of Elaeagnus conferta Roxb (Elaeagnaceae)

Jin Liu, Li-Dan Gong, Linjie Qi, Zi-Yan Liu, Ying Niu, Chao Shi

Mitochondrial DNA Part B: Resources

DOI

2019

The complete chloroplast genome sequence of Manilkara zapota (Linn.) van Royen

Jin Liu, Sheng-Ying Ren, Kai Li, Tong Xu, Ying-Feng Niu, Chao Shi

Mitochondrial DNA Part B: Resources

DOI

2019

Evolution of Oryza chloroplast genomes promoted adaptation to diverse ecological habitats

Li-Zhi Gao, Yun-Long Liu, Dan Zhang, Wei Li, Jun-Lian Gao, Yuan Liu, Kui Li, Chao Shi, Yuan-Dang Zhao, You-jie Zhao, Jun-ying Jiao, Shu-Yan Mao, Cheng-wen Gao, E. Eichler

Communications Biology

DOI

2019

The Chromosome-based Rubber Tree Genome Provides New Insights into Spurge Genome Evolution and Rubber Biosynthesis.

Jin Liu, C. Shi, Chengcheng Shi, Wei Li, Qun-Jie Zhang, Yun Zhang, Kui Li, Huiyun Lu, Chao Shi, Si-Tao Zhu, Zai-Yun Xiao, H. Nan, Yaojing Yue, Xunge Zhu, Yu Wu, Xiaoning Hong, G. Fan, Y. Tong, Dan Zhang, Chang-Li Mao, Yun-Long Liu, S. Hao, Weiqing Liu, Mei-Qi Lv, Hai-bin Zhang, Yuan Liu, Ge-Ran Hu-Tang, Jin-Peng Wang, Jiahao Wang, Yingshuai Sun, Shu-Bang Ni, Wenbin Chen, Xing-Cai Zhang, Y. Jiao, E. Eichler, Guo-Hua Li, Xin Liu, Li-Zhi Gao

Molecular Plant

DOI

2019

The chloroplast genome of Moringa oleifera (Moringaceae)

Jin Liu, Haohong Cai, Hai-Quan Li, Zi-Yan Liu, Cheng Zheng, Chao Shi, Y. Niu

Mitochondrial DNA Part B: Resources

DOI

2018

Chloroplast genome sequence of an endangered non-photosynthetic mycoheterotrophic species Monotropastrum sciaphilum (Andres) G. D. Wallace

Qian-Ru Zhao, Zhen-Wen Liu, Chao Shi, Hua Peng, Shugang Lu

Conservation Genetics Resources

DOI

2018

Chloroplast genome of tropical and sub-tropical fruit tree Clausena lansium (Rutaceae)

Ying-Feng Niu, Shu-Bang Ni, Zi-Yan Liu, Cheng Zheng, Chang-Li Mao, Chao Shi, Jin Liu

Mitochondrial DNA Part B: Resources

DOI

2018

The complete chloroplast genome of tropical and sub-tropical fruit tree Lucuma nervosa (Sapotaceae)

Ying-Feng Niu, Shu-Bang Ni, Zi-Yan Liu, Cheng Zheng, Chang-Li Mao, Chao Shi, Jin Liu

Mitochondrial DNA Part B: Resources

DOI

2018

The whole chloroplast genome sequence of Macadamia tetraphylla (Proteaceae)

Jin Liu, Ying-Feng Niu, Shu-Bang Ni, Xi-Yong He, Cheng Zheng, Zi-Yan Liu, Hao-hong Cai, Chao Shi

Mitochondrial DNA Part B: Resources

DOI

2018

Chloroplast genome of tropical and sub-tropical fruit tree Syzygium samarangense (Myrtaceae)

Jin Liu, Shu-Bang Ni, Cheng Zheng, Chao Shi, Ying-Feng Niu

Mitochondrial DNA Part B: Resources

DOI

2017

The Tea Tree Genome Provides Insights into Tea Flavor and Independent Evolution of Caffeine Biosynthesis.

E. Xia, Hai-bin Zhang, Jun Sheng, Kui Li, Qun-Jie Zhang, Changhoon Kim, Yun Zhang, Yuan Liu, T. Zhu, Wei Li, Hui Huang, Y. Tong, H. Nan, C. Shi, Chao Shi, Jian-Jun Jiang, Shu-Yan Mao, Jun-ying Jiao, Dan Zhang, Yuan-Dang Zhao, You-jie Zhao, Li-ping Zhang, Yun-Long Liu, Ben-ying Liu, Yue-Shu Yu, Shengfu Shao, De-Jiang Ni, E. Eichler, Li-Zhi Gao

Molecular Plant

DOI

2017

Complete chloroplast genome of a subtropical fruit tree Macadamia ternifolia (Proteaceae)

Jin Liu, Ying-Feng Niu, Shu-Bang Ni, Xi-Yong He, Chao Shi

Mitochondrial DNA Part B: Resources

DOI

2017

The complete chloroplast genome of wild shaddock, Citrus maxima (Burm.) Merr.

Jin Liu, Chao Shi

Conservation Genetics Resources

DOI

2017

Full Chloroplast Genome Assembly of 11 Diverse Watermelon Accessions

Chao Shi, Shuo Wang, Fei Zhao, Hua Peng, Chun-Lei Xiang

Frontiers in Genetics

DOI

2017

The complete chloroplast genome of Artocarpus heterophyllus (Moraceae)

Jin Liu, Ying-Feng Niu, Shu-Bang Ni, Zi-Yan Liu, Cheng Zheng, Chao Shi

Mitochondrial DNA Part B: Resources

DOI

2016

The complete chloroplast genome sequence of Chikusichloa aquatica (Poaceae: Oryzeae)

Jie Zhang, Dan Zhang, Chao Shi, Ju Gao, Li-Zhi Gao

Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis

DOI

2016

Full transcription of the chloroplast genome in photosynthetic eukaryotes

Chao Shi, Shuo Wang, E. Xia, Jian-Jun Jiang, Fan-chun Zeng, Li-Zhi Gao

Scientific Reports

DOI

2016

Trading away ancient amber's secrets.

Shuo Wang, Chao Shi, Yunjia Zhang, Guo-Xiong Hu, Li-Zhi Gao

Science

DOI

2014

Thirteen Camellia chloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships

Hui Huang, Chao Shi, Yuan Liu, Shu-Yan Mao, Li-Zhi Gao

BMC Evolutionary Biology

DOI

2014

Rapid diversification of five Oryza AA genomes associated with rice adaptation

Qun-Jie Zhang, T. Zhu, E. Xia, Chao Shi, Yun-Long Liu, Yun Zhang, Yuan Liu, Wen-Kai Jiang, You-jie Zhao, Shu-Yan Mao, Li-ping Zhang, Hui Huang, Jun-ying Jiao, Ping-Zhen Xu, Qiu-Yang Yao, Fan-chun Zeng, Li-Li Yang, Jun-Lian Gao, D. Tao, Yue-Jun Wang, J. Bennetzen, Li-Zhi Gao

Proceedings of the National Academy of Sciences of the United States of America

DOI

2013

Dynamic Evolution of Rht-1 Homologous Regions in Grass Genomes

Jing Wu, X. Kong, Chao Shi, Yong-Qiang Gu, C. Jin, Li-Zhi Gao, J. Jia

PLoS ONE

DOI

2013

Contradiction between Plastid Gene Transcription and Function Due to Complex Posttranscriptional Splicing: An Exemplary Study of ycf15 Function and Evolution in Angiosperms

Chao Shi, Yuan Liu, Hui Huang, E. Xia, Hai-bin Zhang, Li-Zhi Gao

PLoS ONE

DOI

2013

Circular plot of transcriptome reads mapping of the C. sinensis var. assamica chloroplast genome.

Chao Shi, Yuan Liu, Hui Huang, E. Xia, Hai-bin Zhang, Li-Zhi Gao

DOI

2013

Plastid Genome Sequence of a Wild Woody Oil Species, Prinsepia utilis, Provides Insights into Evolutionary and Mutational Patterns of Rosaceae Chloroplast Genomes

Shuo Wang, Chao Shi, Li-Zhi Gao

PLoS ONE

DOI

2012

An Improved Chloroplast DNA Extraction Procedure for Whole Plastid Genome Sequencing

Chao Shi, Na Hu, Hui Huang, Ju Gao, You-jie Zhao, Li-Zhi Gao

PLoS ONE

DOI

精选作品

期刊论文

Complete mitochondrial genomes of the two high-valued bromeliads: comparative genomics and evolutionary insights

General Biogeographic Rules and Lineage‐Specific History Shape the Assembly of Asian Tropical Megadiversity

Comparative analysis of chloroplast genomes reveals molecular evolution and phylogenetic relationships in Styrax (Styracaceae)

油果樟叶绿体基因组特征及系统进化分析

Comprehensive Chloroplast Genome Analysis of Four Callitriche (Plantaginaceae) Species for Phylogenetic and Conservation Insights

Complete mitochondrial genome of Houttuynia cordata sheds light on the evolution of complex structural features in early angiosperms

Comparative analysis of complete chloroplast genomes of five Anemone species and phylogenetic analysis within Tribe Anemoneae (Ranunculaceae)

Protect native fish in China’s Yellow River

Exploring the chloroplast genomics, comparative analysis, evolution, and phylogenetic relationships of Phylica pubescens (Rhamnaceae) in the Cape Flora

Comparative chloroplast genome analyses of diverse Phoebe (Lauraceae) species endemic to China provide insight into their phylogeographical origin

Assembly and comparative analysis of the complete mitochondrial genome of three Macadamia species (M. integrifolia, M. ternifolia and M. tetraphylla)

The complete chloroplast genome sequence of Bromus catharticus Vahl. (Poaceae)

The complete chloroplast genome sequence of Arundo formosana Hack. (Poaceae)

Allocation of gene products to daughter cells is determined by the age of the mother in single Escherichia coli cells

Draft genomes of two outcrossing wild rice, Oryza rufipogon and O. longistaminata, reveal genomic features associated with mating‐system evolution

Improved hybrid de novo genome assembly and annotation of African wild rice, Oryza longistaminata, from Illumina and PacBio sequencing reads

Complete plastid genome of Persea americana Mill. (Ebenales) and phylogenetic analysis

The complete chloroplast genome of Elaeagnus conferta Roxb (Elaeagnaceae)

The complete chloroplast genome sequence of Manilkara zapota (Linn.) van Royen

Evolution of Oryza chloroplast genomes promoted adaptation to diverse ecological habitats

The Chromosome-based Rubber Tree Genome Provides New Insights into Spurge Genome Evolution and Rubber Biosynthesis.

The chloroplast genome of Moringa oleifera (Moringaceae)

Chloroplast genome sequence of an endangered non-photosynthetic mycoheterotrophic species Monotropastrum sciaphilum (Andres) G. D. Wallace

Chloroplast genome of tropical and sub-tropical fruit tree Clausena lansium (Rutaceae)

The complete chloroplast genome of tropical and sub-tropical fruit tree Lucuma nervosa (Sapotaceae)

The whole chloroplast genome sequence of Macadamia tetraphylla (Proteaceae)

Chloroplast genome of tropical and sub-tropical fruit tree Syzygium samarangense (Myrtaceae)

The Tea Tree Genome Provides Insights into Tea Flavor and Independent Evolution of Caffeine Biosynthesis.

Complete chloroplast genome of a subtropical fruit tree Macadamia ternifolia (Proteaceae)

The complete chloroplast genome of wild shaddock, Citrus maxima (Burm.) Merr.

Full Chloroplast Genome Assembly of 11 Diverse Watermelon Accessions

The complete chloroplast genome of Artocarpus heterophyllus (Moraceae)

The complete chloroplast genome sequence of Chikusichloa aquatica (Poaceae: Oryzeae)

Full transcription of the chloroplast genome in photosynthetic eukaryotes

Trading away ancient amber's secrets.

Thirteen Camellia chloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships

Rapid diversification of five Oryza AA genomes associated with rice adaptation

Dynamic Evolution of Rht-1 Homologous Regions in Grass Genomes

Contradiction between Plastid Gene Transcription and Function Due to Complex Posttranscriptional Splicing: An Exemplary Study of ycf15 Function and Evolution in Angiosperms

Circular plot of transcriptome reads mapping of the C. sinensis var. assamica chloroplast genome.

Plastid Genome Sequence of a Wild Woody Oil Species, Prinsepia utilis, Provides Insights into Evolutionary and Mutational Patterns of Rosaceae Chloroplast Genomes

An Improved Chloroplast DNA Extraction Procedure for Whole Plastid Genome Sequencing

预印本

The complete chloroplast genome sequence of wax gourd (Benincasa hispida), and comparative analyses with related species revealing evolutionary dynamics within Benincaseae

研究方向