全哲学｜复旦大学｜学者主页

2026

Hypoosmolarity inhibits ammonia oxidation by terrestrial and freshwater Nitrosopumilaceae members

Joo-Han Gwak, Adebisi Olabisi, Ui-Ju Lee, Christiana Abiola, Seongjun Lee, Hackwon Do, Yun Ji Choi, Jay-Jung Lee, Man‐Young Jung, Nico Jehmlich, Martin von Bergen�, Michael Wagner, Samuel Imisi Awala, Zhe‐Xue Quan, Sung‐Keun Rhee

The ISME Journal

DOI

2025

Flagellimonas ulvae sp. nov. and Flagellimonas rhodophyticola sp. nov., isolated from marine algae

Hui Seong Won, Dong Min Han, Jeong‐Min Kim, Hülya Bayburt, Byeong Jun Choi, Zhe‐Xue Quan, Che Ok Jeon

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2025

Genome sequence of Bacillus altitudinis HH-03 isolated from dairy pipeline

Yan-Hong Lu, Xi-Bei Fan, Ning Lv, Yang Liu, Zhan-Hui Guo, Ruyu Xie, Zhe‐Xue Quan

Microbiology Resource Announcements

DOI

2025

Abundance and distribution of complete ammonia oxidizers under a salinity gradient in the Yangtze Estuary and its adjacent sea

Qiuyue Jiang, Yixuan Zhang, Dan-Qi Wang, Shengnan Zhang, Jian-Gong Wang, Zhe‐Xue Quan

Journal of Applied Microbiology

DOI

2025

Culturable Human Microorganisms and the Impact of Transportation Conditions on Cultivability

Xibei Fan, Ning Lv, Zhe‐Xue Quan

Microorganisms

DOI

2024

水圈微生物生态、功能与资源：水圈微生物专栏序言

黄力，董海良，蒋宏忱，全哲学

《微生物学报》

2024

“ Ca . Nitrosocosmicus” members are the dominant archaea associated with plant rhizospheres

Ui-Ju Lee, Joo-Han Gwak, Seungyeon Choi, Man‐Young Jung, Tae Kwon Lee, Hojin Ryu, Samuel Imisi Awala, Wolfgang Wanek, Michael Wagner, Zhe‐Xue Quan, Sung‐Keun Rhee

mSphere

DOI

2024

Metagenomic characterization of a novel non-ammonia-oxidizing Thaumarchaeota from hadal sediment

Ruyi Zhang, Yan-Ren Wang, Rulong Liu, Sung‐Keun Rhee, Guoping Zhao, Zhe‐Xue Quan

Microbiome

DOI

2023

Salinity changes the nitrification activity and community composition of comammox Nitrospira in intertidal sediments of Yangtze River estuary

Ran Jiang, Wen-Jing Qin, Ruyi Zhang, Kai Zhang, Xing Huang, Yong Li, Chenhao Zhou, Ting Zhu, Yan Zhang, Bin Zou, Ming Nie, Sung‐Keun Rhee, Zhe‐Xue Quan

mSystems

DOI

2023

Hoeflea algicola sp. nov. and Hoeflea ulvae sp. nov., isolated from phycosphere of marine algae

Ju Hye Baek, Sylvia Kristyanto, Jeong‐Min Kim, Dong Min Han, Zhe‐Xue Quan, Che Ok Jeon

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2023

Effects of Investigational Moisturizers on the Skin Barrier and Microbiome following Exposure to Environmental Aggressors: A Randomized Clinical Trial and Ex Vivo Analysis

Danqi Wang, Xi Li, Ruyi Zhang, Chao Yuan, Bo Yan, Philippe G. Humbert, Zhe‐Xue Quan

Journal of Clinical Medicine

DOI

2023

Comammox plays a functionally important role in the nitrification of rice paddy soil with different nitrogen fertilization levels

Kai Zhang, Huifeng Sun, Youcai Kang, Ran Jiang, Yan-Ren Wang, Ruyi Zhang, Shengnan Zhang, Yangyang Li, Peng Li, Fan Yang, Sheng Zhou, Zhe‐Xue Quan

Applied Soil Ecology

DOI

2023

Sample Collection, DNA Extraction, and Library Construction Protocols of the Human Microbiome Studies in the International Human Phenome Project

Yetong Wang, Ruyi Zhang, Yanni Pu, Danqi Wang, Yan-Ren Wang, Xuemei Wu, Yujie Pan, Luo Chen, Guoping Zhao, Zhe‐Xue Quan, Yan Zheng

Phenomics

DOI

2023

Abyssibius alkaniclasticus gen. nov., sp. nov., a novel member of the family Rhodobacteraceae, isolated from the Mariana Trench

Ting-Ting Wei, Xibei Fan, Zhe‐Xue Quan

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2023

Evaluating response mechanisms of soil microbiomes and metabolomes to Bt toxin additions

Lei Ge, Lili Song, Luyao Wang, Yujie Li, Yujie Li, Yu Sun, Cui Wang, Jun Chen, Guogan Wu, Aihu Pan, Yunfei Wu, Zhe‐Xue Quan, Peng Li

Journal of Hazardous Materials

DOI

2023

Combined metagenomic and metabolomic analyses reveal that Bt rice planting alters soil C-N metabolism

Peng Li, Shuifeng Ye, Jun Chen, Luyao Wang, Yujie Li, Lei Ge, Guogan Wu, Lili Song, Cui Wang, Yu Sun, Jinbin Wang, Aihu Pan, Zhe‐Xue Quan, Yunfei Wu

ISME Communications

DOI

2022

水圈微生物专栏序言

黄力，董海良，蒋宏忱，全哲学

《微生物学报》

2022

Infant Mode of Delivery Shapes the Skin Mycobiome of Prepubescent Children

Yan-Ren Wang, Ting Zhu, Fan-Qi Kong, Yuanyuan Duan, Carlos Galzote, Zhe‐Xue Quan

Microbiology Spectrum

DOI

2022

Deterministic Factors Determine the Comammox Community Composition in the Pearl River Estuary Ecosystem

Zongbao Liu, Qiaoyan Wei, Dayu Zou, Siyu Zhang, Chuanlun Zhang, Zhe‐Xue Quan, Meng Li

Microbiology Spectrum

DOI

2022

Abundance and Niche Differentiation of Comammox in the Sludges of Wastewater Treatment Plants That Use the Anaerobic–Anoxic–Aerobic Process

Shengnan Zhang, Jian-Gong Wang, Danqi Wang, Qiuyue Jiang, Zhe‐Xue Quan

Life

DOI

2022

Methylophaga pinxianii sp. nov., isolated from the Mariana Trench

Ting-Ting Wei, Ruyi Zhang, Zhe‐Xue Quan

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2022

Thalassolituus alkanivorans sp. nov., a hydrocarbon-utilizing bacterium isolated from the Mariana Trench

Ting-Ting Wei, Shan He, Zhe‐Xue Quan

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2021

Abundance and niche specificity of different types of complete ammonia oxidizers (comammox) in salt marshes covered by different plants

Dan-Qi Wang, Chen-Hao Zhou, Ming Nie, Ji‐Dong Gu, Zhe‐Xue Quan

The Science of The Total Environment

DOI

2021

Comparison of Fecal Collection Methods on Variation in Gut Metagenomics and Untargeted Metabolomics

Huihui Guan, Yanni Pu, Chenglin Liu, Tao Lou, Shishang Tan, Mengmeng Kong, Zhonghan Sun, Zhendong Mei, Qibin Qi, Zhe‐Xue Quan, Guoping Zhao, Yan Zheng

mSphere

DOI

2021

Cross‐phytogroup assessment of foliar epiphytic mycobiomes

Ting Zhu, Jia Yao, Hao Liu, Chenhao Zhou, Yuan‐Zhan Liu, Zhengwei Wang, Zhe‐Xue Quan, Bo Li, Yang Ji, Wei‐Chang Huang, Ming Nie

Environmental Microbiology

DOI

2021

Ammonium promoting methane oxidation by stimulating the Type Ia methane-oxidizing bacteria in tidal flat sediments of the Yangtze River estuary

Fei Xia, Qiuyue Jiang, Ting Zhu, Bin Zou, Huan Liu, Zhe‐Xue Quan

The Science of The Total Environment

DOI

2021

Horizontal Gene Transfer of Genes Encoding Copper-Containing Membrane-Bound Monooxygenase (CuMMO) and Soluble Di-iron Monooxygenase (SDIMO) in Ethane- and Propane-Oxidizing Rhodococcus Bacteria

Bin Zou, Ying Huang, Pan-Pan Zhang, Xiaoming Ding, Huub J. M. Op den Camp, Zhe‐Xue Quan

Applied and Environmental Microbiology

DOI

2020

基于分级过滤的自然水体原核微生物群落分析

宋家梁，张汝毅，邹斌，全哲学

《微生物学杂志》

2020

马里亚纳海沟不同深度水样微生物分离与多样性分析

黄莹，秦纹静，戴红，张汝毅，全哲学

《微生物学通报》

DOI

2020

水圈微生物：推动地球重要元素循环的隐形巨人

黄力，董海良，全哲学，蒋宏忱

《微生物学报》

2020

滩涂湿地中全程硝化菌随季节和深度变化的分布特性

戴红，蒋秋悦，全哲学

《微生物学杂志》

2020

Dynamics of Skin Mycobiome in Infants

Ting Zhu, Yuanyuan Duan, Fan-Qi Kong, Carlos Galzote, Zhe‐Xue Quan

Frontiers in Microbiology

DOI

2020

Design of targeted primers based on 16S rRNA sequences in meta-transcriptomic datasets and identification of a novel taxonomic group in the Asgard archaea

Ruyi Zhang, Bin Zou, Yongwei Yan, Che Ok Jeon, Meng Li, Mingwei Cai, Zhe‐Xue Quan

BMC Microbiology

DOI

2020

The complete genome of extracellular protease-producing Deinococcus sp. D7000 isolated from the hadal region of Mariana Trench Challenger Deep

Ruyi Zhang, Ying Huang, Wen-Jing Qin, Zhe‐Xue Quan

Marine Genomics

DOI

2020

Fimbriimonadia

Zhe‐Xue Quan, Wan‐Taek Im

Bergey's Manual of Systematics of Archaea and Bacteria

DOI

2020

Fimbriimonas

Zhe‐Xue Quan, Wan‐Taek Im

Bergey's Manual of Systematics of Archaea and Bacteria

DOI

2020

Use of Newly Designed Primers for Quantification of Complete Ammonia-Oxidizing (Comammox) Bacterial Clades and Strict Nitrite Oxidizers in the Genus Nitrospira

Ran Jiang, Jian-Gong Wang, Ting Zhu, Bin Zou, Danqi Wang, Sung‐Keun Rhee, Dong An, Zhi-Yuan Ji, Zhe‐Xue Quan

Applied and Environmental Microbiology

DOI

2019

婴儿与母亲皮肤细菌群落结构的比较分析

朱婷，曾丹宁，全哲学

《微生物与感染》

2019

Archaeal nitrification is constrained by copper complexation with organic matter in municipal wastewater treatment plants

Joo-Han Gwak, Man‐Young Jung, Heeji Hong, Jong‐Geol Kim, Zhe‐Xue Quan, John R. Reinfelder, Emilie Spasov, Josh David Neufeld, Michael Wagner, Sung‐Keun Rhee

The ISME Journal

DOI

2019

Distribution of comammox and canonical ammonia‐oxidizing bacteria in tidal flat sediments of the Yangtze River estuary at different depths over four seasons

Qian Jiang, Fei Xia, Ting Zhu, DanLin Wang, Zhe‐Xue Quan

Journal of Applied Microbiology

DOI

2019

Age and Mothers: Potent Influences of Children’s Skin Microbiota

Ting Zhu, Xing Liu, Fan-Qi Kong, Yuanyuan Duan, Alyson L. Yee, Madeline Kim, Carlos Galzote, Jack A. Gilbert, Zhe‐Xue Quan

Journal of Investigative Dermatology

DOI

2019

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

Robert Alan Edwards, Alejandro A. Vega, Holly M. Norman, Maria Cynthia Ohaeri, Kyle Levi, Elizabeth Ann Dinsdale, Ondřej Cinek, Ramy Karam Aziz, Katelyn A. McNair, Jeremy J. Barr, Kyle J. Bibby, Stan J. J. Brouns, Adrián Cazares, Patrick A. de Jonge, Christelle Desnues, Samuel L. Díaz‐Muñoz, Peter C. Fineran, Alexander Kurilshikov, Rob Lavigne, Karla Mazankova, David McCarthy, Franklin L. Nóbrega, Alejandro Reyes, German Tapia, Nicole Trefault, Alexander Tyakht, Pablo Vinuesa, Jeroen Wagemans, Alexandra Zhernakova, Frank M. Aarestrup, Gunduz Ahmadov, Abeer A. Alassaf, Josefa Anton, Abigail E. Asangba, Emma K. Billings, Adrian Cantu, Jane M. Carlton, Daniel Cazares, Gyu-Sung Cho, Tess Condeff, Pilar Cortés, Mike R. Cranfield, Daniel Cuevas, Rodrigo De la Iglesia, Przemysław Decewicz, Michael P. Doane, Nathaniel Jay Dominy, Łukasz Dziewit, Bashir Mukhtar Elwasila Elmahi, A. Murat Eren, Charles M. A. P. Franz, Jingyuan Fu, Cristina García‐Aljaro, Elodie Ghedin, Kristen M. Gulino, John Matthew Haggerty, Steven Robert Head, René S. Hendriksen, Colin Hill, Heikki Hyöty, Elena N. Ilina, Mitchell T. Irwin, Thomas C. Jeffries, Juan T. Jofre, Randall E. Junge, Scott Theodore Kelley, Mohammadali Khan Mirzaei, Martín Miguel Kowalewski, Deepak Kumaresan, Steven R. Leigh, David A. Lipson, Eugenia S. Lisitsyna, Montserrat Llagostera, Julia M. Maritz, Linsey C. Marr, Angela McCann, Shahar Molshanski-Mor, Sílvia Monteiro, Benjamin Moreira‐Grez, Megan M. Morris, Lawrence Mugisha, Maite Muniesa, Horst Neve, Nam Nguyen, Olivia D. Nigro, Anders S. Nilsson, Taylor O’Connell, Rasha Odeh, Andrew S. Oliver, Mariana Piuri, Aaron J. Prussin, Udi Qimron, Zhe‐Xue Quan, Petra Rainetová, Adán Andrés Ramírez Rojas, Raúl Ricardo Raya, Kim Reasor, Gillian A. O. Rice, Alessandro Rossi, Ricardo Santos

Nature Microbiology

DOI

2019

Oceaniradius stylonematis gen. nov., sp. nov., isolated from a red alga, Stylonema cornu-cervi

Sang Eun Jeong, Kyung Hyun Kim, Duckhyun Lhee, Hwan Su Yoon, Zhe‐Xue Quan, En-Young Lee, Che Ok Jeon

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2019

Rhodophyticola porphyridii gen. nov., sp. nov., isolated from a red alga, Porphyridium marinum

Hye Su Jung, Sang Eun Jeong, Byung Hee Chun, Zhe‐Xue Quan, Che Ok Jeon

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2019

F imbriimonadales

Zhe‐Xue Quan, Wan‐Taek Im

Bergey's Manual of Systematics of Archaea and Bacteria

DOI

2019

Fimbriimonadaceae

Zhe‐Xue Quan, Wan‐Taek Im

Bergey's Manual of Systematics of Archaea and Bacteria

DOI

2019

Roseicella frigidaeris gen. nov., sp. nov., isolated from an air-conditioning system

Shehzad Abid Khan, Sang Eun Jeong, Hye Su Jung, Zhe‐Xue Quan, Che Ok Jeon

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2018

从乙烷氧化富集物中分离到的乙醇氧化不动杆菌的生理生化特点

张盼盼，黄莹，朱婷，全哲学

《微生物学杂志》

2018

追寻全程硝化菌之路:基因序列驱动的新功能微生物的发现

全哲学

《中国科学基金》

2018

Microbial Communities and Diversities in Mudflat Sediments Analyzed Using a Modified Metatranscriptomic Method

Yongwei Yan, Qiuyue Jiang, Jian-Gong Wang, Ting Zhu, Bin Zou, Qiongfen Qiu, Zhe‐Xue Quan

Frontiers in Microbiology

DOI

2018

Ubiquity and Diversity of Complete Ammonia Oxidizers (Comammox)

Fei Xia, Jian-Gong Wang, Ting Zhu, Bin Zou, Sung‐Keun Rhee, Zhe‐Xue Quan

Applied and Environmental Microbiology

DOI

2018

Draft Genome Sequence of n -Alkane-Utilizing Acinetobacter sp. Strain BS1, Isolated from Ethane Oxidation Culture

Yong-wei Yan, Panpan Zhang, Ting Zhu, Zhe‐Xue Quan

Genome Announcements

DOI

2018

A Modified Low-quantity RNA-Seq Method for Microbial Community and Diversity Analysis Using Small Subunit Ribosomal RNA

Yongwei Yan, Ting Zhu, Bin Zou, Zhe‐Xue Quan

BIO-PROTOCOL

DOI

2017

氮源类型对甲烷氧化过程主要菌群的影响

高鑫华，朱婷，邹斌，全哲学

《基因组学与应用生物学》

2017

Modified RNA-seq method for microbial community and diversity analysis using rRNA in different types of environmental samples

Yongwei Yan, Bin Zou, Ting Zhu, Wael Nabil Hozzein, Zhe‐Xue Quan

PLoS ONE

DOI

2017

MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool

Bin Zou, JieFu Li, Quan Zhou, Zhe‐Xue Quan

PLoS ONE

DOI

2017

Tagged Highly Degenerate Primer (THDP)-PCR for Community Analysis of Methane- and Ammonia-oxidizing Bacteria Based on Copper-containing Membrane-bound Monooxygenases (CuMMO)

Jian-Gong Wang, Fei Xia, Jemaneh Zeleke, Bin Zou, Zhe‐Xue Quan

BIO-PROTOCOL

DOI

2016

分娩方式影响婴儿皮肤真菌群落组成

应时，谭渊，全哲学

《复旦学报(自然科学版)》

2016

An improved protocol with a highly degenerate primer targeting copper-containing membrane-bound monooxygenase genes for community analysis of methane- and ammonia-oxidizing bacteria

Jian-Gong Wang, Fei Xia, Jemaneh Zeleke, Bin Zou, Sung‐Keun Rhee, Zhe‐Xue Quan

FEMS Microbiology Ecology

DOI

2015

The Influence of Age and Gender on Skin-Associated Microbial Communities in Urban and Rural Human Populations

Shi Ying, Dan-Ning Zeng, Liang Chi, Yuan Tan, Carlos Galzote, Cesar Cardona, Simon Lax, Jack A. Gilbert, Zhe‐Xue Quan

PLoS ONE

DOI

2015

Complete genome sequence of Methylophilus sp. TWE2 isolated from methane oxidation enrichment culture of tap-water

Fei Xia, Bin Zou, Cong Shen, Ting Zhu, Xinhua Gao, Zhe‐Xue Quan

Journal of Biotechnology

DOI

2015

Communities of ammonia oxidizers at different stages of Spartina alterniflora invasion in salt marshes of Yangtze River estuary

Fei Xia, Jemaneh Zeleke, Qiang Sheng, Jihua Wu, Zhe‐Xue Quan

The Journal of Microbiology

DOI

2014

基于元基因组学数据集的海洋微生物多样性分析

鲁水龙，俞晓，全哲学

《微生物学杂志》

2014

上海健康人群夏冬两季皮肤真菌群落组成:基于高通量测序技术的研究

迟亮，谭渊，全哲学

《复旦学报(自然科学版)》

2014

Community size and composition of ammonia oxidizers and denitrifiers in an alluvial intertidal wetland ecosystem

Ziye Hu, Han Meng, Jin-Huan Shi, Naishun Bu, Changming Fang, Zhe‐Xue Quan

Frontiers in Microbiology

DOI

2014

Analysis of microbial diversity by pyrosequencing the small-subunit ribosomal RNA without PCR amplification

Xiaoran Li, Yi Lv, Han Meng, Ji‐Dong Gu, Zhe‐Xue Quan

Applied Microbiology and Biotechnology

DOI

2014

The First Complete Genome Sequence of the Class Fimbriimonadia in the Phylum Armatimonadetes

Ziye Hu, Yuezhu Wang, Wan‐Taek Im, Shengyue Wang, Guoping Zhao, Huajun Zheng, Zhe‐Xue Quan

PLoS ONE

DOI

2013

追寻被“遗漏”的微生物

全哲学

《微生物学通报》

2013

人体皮肤微生物群落研究进展

应时，全哲学

《微生物与感染》

2013

Effects of Spartina alterniflora invasion on the communities of methanogens and sulfate-reducing bacteria in estuarine marsh sediments

Jemaneh Zeleke, Qiang Sheng, Jian-Gong Wang, Mingyao Huang, Fei Xia, Jihua Wu, Zhe‐Xue Quan

Frontiers in Microbiology

DOI

2013

Unveiling abundance and distribution of planktonic B acteria and A rchaea in a polynya in A mundsen S ea, A ntarctica

Jong‐Geol Kim, Soo-Je Park, Zhe‐Xue Quan, Man‐Young Jung, In‐Tae Cha, So‐Jeong Kim, Kyoung‐Ho Kim, Eun Jin Yang, Young‐Nam Kim, SangHoon Lee, Sung‐Keun Rhee

Environmental Microbiology

DOI

2013

Bacterial and fungal diversity in the starter production process of Fen liquor, a traditional Chinese liquor

Xiaoran Li, Enbo Ma, Liang‐Zhen Yan, Han Meng, Xiaowei Du, Zhe‐Xue Quan

The Journal of Microbiology

DOI

2013

Analysis of the bacterial communities associated with different drinking water treatment processes

Dan-Ning Zeng, Zhenyu Fan, Liang Chi, Xia Wang, Weidong Qu, Zhe‐Xue Quan

World Journal of Microbiology and Biotechnology

DOI

2013

Methyl Coenzyme M Reductase A (mcrA) Gene-Based Investigation of Methanogens in the Mudflat Sediments of Yangtze River Estuary, China

Jemaneh Zeleke, Shui-Long Lu, Jian-Gong Wang, Jingxin Huang, Bo Li, Andrew V. Ogram, Zhe‐Xue Quan

Microbial Ecology

DOI

2012

Responses of bacterial and fungal communities to an elevation gradient in a subtropical montane forest of China

Han Meng, Ke Li, Ming Nie, Jia-Rong Wan, Zhe‐Xue Quan, Changming Fang, Jiakuan Chen, Ji‐Dong Gu, Bo Li

Applied Microbiology and Biotechnology

DOI

2012

Metagenome Analysis of a Complex Community Reveals the Metabolic Blueprint of Anammox Bacterium “Candidatus Jettenia asiatica”

Ziye Hu, Daan R. Speth, Kees‐Jan Françoijs, Zhe‐Xue Quan, Mike S. M. Jetten

Frontiers in Microbiology

DOI

2012

Abundance and composition of ammonia-oxidizing bacteria and archaea in different types of soil in the Yangtze River estuary

Xiaoran Li, Yi-Ping Xiao, Wenwei Ren, Zeng-fu Liu, Jin-Huan Shi, Zhe‐Xue Quan

Journal of Zhejiang University SCIENCE B

DOI

2012

Coverage evaluation of universal bacterial primers using the metagenomic datasets

Dan-Ping Mao, Quan Zhou, Chong-Yu Chen, Zhe‐Xue Quan

BMC Microbiology

DOI

2012

Description of Fimbriimonas ginsengisoli gen. nov., sp. nov. within the Fimbriimonadia class nov., of the phylum Armatimonadetes

Wan‐Taek Im, Ziye Hu, Kyoung‐Ho Kim, Sung‐Keun Rhee, Han Meng, Sung‐Taik Lee, Zhe‐Xue Quan

Antonie van Leeuwenhoek

DOI

2011

Hydrazine Synthase, a Unique Phylomarker with Which To Study the Presence and Biodiversity of Anammox Bacteria

Harry R. Harhangi, Mathilde Le Roy, Theo A. van Alen, Baolan Hu, Joost Groen, Boran Kartal, Susannah Green Tringe, Zhe‐Xue Quan, Mike S. M. Jetten, Huub J. M. Op den Camp

Applied and Environmental Microbiology

DOI

2011

Comparison of Bacterial and Fungal Communities Between Natural and Planted Pine Forests in Subtropical China

Ming Nie, Han Meng, Ke Li, Jia-Rong Wan, Zhe‐Xue Quan, Changming Fang, Jiakuan Chen, Bo Li

Current Microbiology

DOI

2011

Bacterial and fungal diversity in the traditional Chinese liquor fermentation process

Xiaoran Li, Enbo Ma, Liang‐Zhen Yan, Han Meng, Xiaowei Du, Shengwan Zhang, Zhe‐Xue Quan

International Journal of Food Microbiology

DOI

2010

崇明岛东滩不同植物覆盖的土壤可培养细菌多样性比较

孟晗，惠威，肖义平，田官荣，全哲学

《复旦学报(自然科学版)》

2010

Altererythrobacter dongtanensis sp. nov., isolated from a tidal flat

Zhenyu Fan, Yi-Ping Xiao, Wei Hui, Guan‐rong Tian, Jung‐Sook Lee, Keun Chul Lee, Zhe‐Xue Quan

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2010

Flavobacterium dongtanense sp. nov., isolated from the rhizosphere of a wetland reed

Yi-Ping Xiao, Wei Hui, Jung‐Sook Lee, Keun Chul Lee, Zhe‐Xue Quan

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2010

Molecular epidemiology of Cryptococcus neoformans species complex isolates from HIV-positive and HIV-negative patients in southeast China

Min Chen, Xiaoran Li, Wu Shaoxi, Xiaoping Tang, Bi-Wei Feng, Zhirong Yao, Weihua Pan, Wanqing Liao, Zhe‐Xue Quan

Frontiers of Medicine

DOI

2009

Rhizosphere effects on soil bacterial abundance and diversity in the Yellow River Deltaic ecosystem as influenced by petroleum contamination and soil salinization

Ming Nie, Xiao-dong Zhang, Jin-qing Wang, Lifen Jiang, Ji Young Yang, Zhe‐Xue Quan, Xinhong Cui, Changming Fang, Bo Li

Soil Biology and Biochemistry

DOI

2009

Bacterial diversity of water and sediment in the Changjiang estuary and coastal area of the East China Sea

Bi-Wei Feng, Xiaoran Li, Jinhui Wang, Ziye Hu, Han Meng, Lingyun Xiang, Zhe‐Xue Quan

FEMS Microbiology Ecology

DOI

2009

Pseudomonas caeni sp. nov., a denitrifying bacterium isolated from the sludge of an anaerobic ammonium-oxidizing bioreactor

Y.-P. Xiao, Hui Wu, Qian Wang, Seong Woon Roh, X.-Q. Shi, J.-H. Shi, Zhe‐Xue Quan

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2009

The bacterial diversity in an anaerobic ammonium-oxidizing (anammox) reactor community

Xiaoran Li, Bing Du, Haixia Fu, Ruo-Fan Wang, Jin-Huan Shi, Yue Wang, Mike S. M. Jetten, Zhe‐Xue Quan

Systematic and Applied Microbiology

DOI

2009

Could nested PCR be applicable for the study of microbial diversity?

Zhenyu Fan, Xiaoran Li, Dan-Ping Mao, Genfeng Zhu, Shengyue Wang, Zhe‐Xue Quan

World Journal of Microbiology and Biotechnology

DOI

2009

Analyses of microbial consortia in the starter of Fen Liquor

J.-H. Shi, Y.-P. Xiao, Xin-She Li, Enbo Ma, X.-W. Du, Zhe‐Xue Quan

Letters in Applied Microbiology

DOI

2008

Marinobacter goseongensis sp. nov., from seawater

Seong Woon Roh, Zhe‐Xue Quan, Young‐Do Nam, H.-W. Chang, Kyoung‐Ho Kim, S.-K. Rhee, Hee‐Mock Oh, Che Ok Jeon, Jung‐Hoon Yoon, Jin‐Woo Bae

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2008

Pedobacter agri sp. nov., from soil

Seong Woon Roh, Zhe‐Xue Quan, Young‐Do Nam, Hui‐Wen Chang, Kyoung‐Ho Kim, M.-K. Kim, W.-T. Im, Long Jin, S.-H. Kim, Seung Tae Lee, Jin‐Woo Bae

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2008

Joostella marina gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the East Sea

Zhe‐Xue Quan, Y.-P. Xiao, Seong Woon Roh, Young‐Do Nam, H.-W. Chang, K.-S. Shin, S.-K. Rhee, Y.-H. Park, Jin‐Woo Bae

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2008

Diversity of ammonium‐oxidizing bacteria in a granular sludge anaerobic ammonium‐oxidizing (anammox) reactor

Zhe‐Xue Quan, Sung‐Keun Rhee, Jiane Zuo, Yang Yang, Jin‐Woo Bae, Ja Ryeong Park, Sung‐Taik Lee, Yong‐Ha Park

Environmental Microbiology

DOI

2007

Sulfitobacter litoralis sp. nov., a marine bacterium isolated from the East Sea, Korea

Ja Ryeong Park, Jin‐Woo Bae, Young‐Do Nam, Ho-Won Chang, Hyuk-Yong Kwon, Zhe‐Xue Quan, Yong-Ha Park

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2007

Vibrio litoralis sp. nov., isolated from a Yellow Sea tidal flat in Korea

Young‐Do Nam, Ho-Won Chang, Ja Ryeong Park, Hyuk-Yong Kwon, Zhe‐Xue Quan, Yong-Ha Park, Byung-Chun Kim, Jin‐Woo Bae

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2007

Pseudoalteromonas marina sp. nov., a marine bacterium isolated from tidal flats of the Yellow Sea, and reclassification of Pseudoalteromonas sagamiensis as Algicola sagamiensis comb. nov.

Young‐Do Nam, Ho-Won Chang, Ja Ryeong Park, Hyuk-Yong Kwon, Zhe‐Xue Quan, Yong-Ha Park, Jung‐Sook Lee, Jung‐Hoon Yoon, Jin‐Woo Bae

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2007

Chryseobacterium caeni sp. nov., isolated from bioreactor sludge

Zhe‐Xue Quan, Kwang Kyu Kim, Myung-Kyum Kim, Long Jin, Sung‐Taik Lee

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2006

Azonexus caeni sp. nov., a denitrifying bacterium isolated from sludge of a wastewater treatment plant

Zhe‐Xue Quan, Wan‐Taek Im, Sung‐Taik Lee

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2006

Oceanisphaera donghaensis sp. nov., a halophilic bacterium from the East Sea, Korea

Soo-Je Park, Cheol-Hee Kang, Young‐Do Nam, Jin‐Woo Bae, Yong-Ha Park, Zhe‐Xue Quan, Deok-Soo Moon, Hyeonju Kim, Dong‐Hyun Roh, Sung‐Keun Rhee

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

DOI

2006

Influence of phenol on the biodegradation of pyridine by freely suspended and immobilized Pseudomonas putida MK1

M.K. Kim, Ian Singleton, Chengri Yin, Zhe‐Xue Quan, Myeongeun Lee, S.-T. Lee

Letters in Applied Microbiology

DOI

精选作品

期刊论文

Hypoosmolarity inhibits ammonia oxidation by terrestrial and freshwater Nitrosopumilaceae members

Flagellimonas ulvae sp. nov. and Flagellimonas rhodophyticola sp. nov., isolated from marine algae

Genome sequence of Bacillus altitudinis HH-03 isolated from dairy pipeline

Abundance and distribution of complete ammonia oxidizers under a salinity gradient in the Yangtze Estuary and its adjacent sea

Culturable Human Microorganisms and the Impact of Transportation Conditions on Cultivability

水圈微生物生态、功能与资源：水圈微生物专栏序言

“ Ca . Nitrosocosmicus” members are the dominant archaea associated with plant rhizospheres

Metagenomic characterization of a novel non-ammonia-oxidizing Thaumarchaeota from hadal sediment

Salinity changes the nitrification activity and community composition of comammox Nitrospira in intertidal sediments of Yangtze River estuary

Hoeflea algicola sp. nov. and Hoeflea ulvae sp. nov., isolated from phycosphere of marine algae

Effects of Investigational Moisturizers on the Skin Barrier and Microbiome following Exposure to Environmental Aggressors: A Randomized Clinical Trial and Ex Vivo Analysis

Comammox plays a functionally important role in the nitrification of rice paddy soil with different nitrogen fertilization levels

Sample Collection, DNA Extraction, and Library Construction Protocols of the Human Microbiome Studies in the International Human Phenome Project

Abyssibius alkaniclasticus gen. nov., sp. nov., a novel member of the family Rhodobacteraceae, isolated from the Mariana Trench

Evaluating response mechanisms of soil microbiomes and metabolomes to Bt toxin additions

Combined metagenomic and metabolomic analyses reveal that Bt rice planting alters soil C-N metabolism

水圈微生物专栏序言

Infant Mode of Delivery Shapes the Skin Mycobiome of Prepubescent Children

Deterministic Factors Determine the Comammox Community Composition in the Pearl River Estuary Ecosystem

Abundance and Niche Differentiation of Comammox in the Sludges of Wastewater Treatment Plants That Use the Anaerobic–Anoxic–Aerobic Process

Methylophaga pinxianii sp. nov., isolated from the Mariana Trench

Thalassolituus alkanivorans sp. nov., a hydrocarbon-utilizing bacterium isolated from the Mariana Trench

Abundance and niche specificity of different types of complete ammonia oxidizers (comammox) in salt marshes covered by different plants

Comparison of Fecal Collection Methods on Variation in Gut Metagenomics and Untargeted Metabolomics

Cross‐phytogroup assessment of foliar epiphytic mycobiomes

Ammonium promoting methane oxidation by stimulating the Type Ia methane-oxidizing bacteria in tidal flat sediments of the Yangtze River estuary

Horizontal Gene Transfer of Genes Encoding Copper-Containing Membrane-Bound Monooxygenase (CuMMO) and Soluble Di-iron Monooxygenase (SDIMO) in Ethane- and Propane-Oxidizing Rhodococcus Bacteria

基于分级过滤的自然水体原核微生物群落分析

马里亚纳海沟不同深度水样微生物分离与多样性分析

水圈微生物：推动地球重要元素循环的隐形巨人

滩涂湿地中全程硝化菌随季节和深度变化的分布特性

Dynamics of Skin Mycobiome in Infants

Design of targeted primers based on 16S rRNA sequences in meta-transcriptomic datasets and identification of a novel taxonomic group in the Asgard archaea

The complete genome of extracellular protease-producing Deinococcus sp. D7000 isolated from the hadal region of Mariana Trench Challenger Deep

Fimbriimonadia

Fimbriimonas

Use of Newly Designed Primers for Quantification of Complete Ammonia-Oxidizing (Comammox) Bacterial Clades and Strict Nitrite Oxidizers in the Genus Nitrospira

婴儿与母亲皮肤细菌群落结构的比较分析

Archaeal nitrification is constrained by copper complexation with organic matter in municipal wastewater treatment plants

Distribution of comammox and canonical ammonia‐oxidizing bacteria in tidal flat sediments of the Yangtze River estuary at different depths over four seasons

Age and Mothers: Potent Influences of Children’s Skin Microbiota

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

Oceaniradius stylonematis gen. nov., sp. nov., isolated from a red alga, Stylonema cornu-cervi

Rhodophyticola porphyridii gen. nov., sp. nov., isolated from a red alga, Porphyridium marinum

F imbriimonadales

Fimbriimonadaceae

Roseicella frigidaeris gen. nov., sp. nov., isolated from an air-conditioning system

从乙烷氧化富集物中分离到的乙醇氧化不动杆菌的生理生化特点

追寻全程硝化菌之路:基因序列驱动的新功能微生物的发现

Microbial Communities and Diversities in Mudflat Sediments Analyzed Using a Modified Metatranscriptomic Method

Ubiquity and Diversity of Complete Ammonia Oxidizers (Comammox)

Draft Genome Sequence of n -Alkane-Utilizing Acinetobacter sp. Strain BS1, Isolated from Ethane Oxidation Culture

A Modified Low-quantity RNA-Seq Method for Microbial Community and Diversity Analysis Using Small Subunit Ribosomal RNA

氮源类型对甲烷氧化过程主要菌群的影响

Modified RNA-seq method for microbial community and diversity analysis using rRNA in different types of environmental samples

MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool

Tagged Highly Degenerate Primer (THDP)-PCR for Community Analysis of Methane- and Ammonia-oxidizing Bacteria Based on Copper-containing Membrane-bound Monooxygenases (CuMMO)

分娩方式影响婴儿皮肤真菌群落组成

An improved protocol with a highly degenerate primer targeting copper-containing membrane-bound monooxygenase genes for community analysis of methane- and ammonia-oxidizing bacteria

The Influence of Age and Gender on Skin-Associated Microbial Communities in Urban and Rural Human Populations

Complete genome sequence of Methylophilus sp. TWE2 isolated from methane oxidation enrichment culture of tap-water

Communities of ammonia oxidizers at different stages of Spartina alterniflora invasion in salt marshes of Yangtze River estuary

基于元基因组学数据集的海洋微生物多样性分析

上海健康人群夏冬两季皮肤真菌群落组成:基于高通量测序技术的研究

Community size and composition of ammonia oxidizers and denitrifiers in an alluvial intertidal wetland ecosystem

Analysis of microbial diversity by pyrosequencing the small-subunit ribosomal RNA without PCR amplification

The First Complete Genome Sequence of the Class Fimbriimonadia in the Phylum Armatimonadetes

追寻被“遗漏”的微生物

人体皮肤微生物群落研究进展

Effects of Spartina alterniflora invasion on the communities of methanogens and sulfate-reducing bacteria in estuarine marsh sediments

Unveiling abundance and distribution of planktonic B acteria and A rchaea in a polynya in A mundsen S ea, A ntarctica

Bacterial and fungal diversity in the starter production process of Fen liquor, a traditional Chinese liquor

Analysis of the bacterial communities associated with different drinking water treatment processes

Methyl Coenzyme M Reductase A (mcrA) Gene-Based Investigation of Methanogens in the Mudflat Sediments of Yangtze River Estuary, China

Responses of bacterial and fungal communities to an elevation gradient in a subtropical montane forest of China

Metagenome Analysis of a Complex Community Reveals the Metabolic Blueprint of Anammox Bacterium “Candidatus Jettenia asiatica”

Abundance and composition of ammonia-oxidizing bacteria and archaea in different types of soil in the Yangtze River estuary

Coverage evaluation of universal bacterial primers using the metagenomic datasets