百晓学者学者目录

沈菊培

副研究员、助理研究员、博士生导师、博导、教授、研究员、硕士生导师、硕导,福建师范大学

精选作品

期刊论文

2026

长期氮磷施肥对黑土氨氧化微生物丰度及硝化潜势的影响

常钰海,马星竹,刘子恺,陈文锐,王思仪,李娴,沈菊培

《福建师范大学学报(自然科学版)》

2026

Tardigrade is associated with ecosystem multifunctionality in subtropical forest soils of China

Zi-Kai Liu, Zi‐Yang He, Claire Huang, Weidong Chen, Ju‐Pei Shen, Dan‐Ting Yu, Ji‐Zheng He

Applied Soil Ecology

2026

Seasonal responses of soil bacteria, fungi and protists to nitrogen and phosphorus addition in a subtropical forest

Yanji Liu, Hang‐Wei Hu, Yong Zheng, Zi-Kai Liu, Lige Zhang, Ju‐Pei Shen

Applied Soil Ecology

2026

Coastal wetland converted to uplands reduce the diversity of soil nitrogen-related functional communities

Hanxia Yu, Zikai Liu, Md. Akhter Hossain, Ju‐Pei Shen

Applied Soil Ecology

2026

Rhizosphere filtering drives the diversity and assembly of soil rotifer communities

Fangfang Li, Xiaoyan Jiao, Anqi Sun, Ju‐Pei Shen, Yong Zheng, Ji‐Zheng He, Hang‐Wei Hu

Applied Soil Ecology

2026

Land use type affects the contribution of heterotrophic nitrification in New Zealand soils

Hongyu Wu, Timothy J. Clough, Andriy Podolyan, Chris Chisholm, Ju‐Pei Shen, Peng Li, Chengjun Zhang, Hong Pan, Limei Zhang, Qiang Zhang, Hong Jie Di

Geoderma

2026

Divergent response of surface and deep soil nitrogen mineralization to nitrogen and phosphorus additions in a subtropical forest

Lige Zhang, Zi-Kai Liu, Shengsheng Jin, Luhong Zhou, Yongxin Lin, Shengjing Shi, Ju‐Pei Shen

Soil Ecology Letters

2026

Exogenous resources drive convergent successional processes within soil microbial food web in two soil types

Yu-Jia Cai, Yuhai Chang, Jessica Louise Ray, Hong Jie Di, Ju‐Pei Shen

Environmental Microbiome

2026

Subsoiling reduces N2O emissions by altering the relative gas diffusivity, O2 status and microbial communities in grazed pasture soil

Juan Liu, Timothy J. Clough, Sam T. Carrick, Jiafa Luo, Andriy Podolyan, Naomi S. Wells, Chris Chisholm, Ju‐Pei Shen, Peng Li, Lianfeng Du, Hong Pan, Limei Zhang, Hong J. Di

Geoderma

2026

Soil depth mediates contrasting effects of nitrogen and phosphorus inputs on microbial carbon use efficiency in a subtropical forest

Lige Zhang, Zi-Kai Liu, Yuhai Chang, Shengsheng Jin, Hongjie Di, Ju‐Pei Shen

Pedobiologia

2025

Soil science research in Research Center for Eco-Environmental Sciences: Review and outlook

Baodong Chen, Zhipeng Hao, Lei Luo, Nan Wu, Wenju Liu, Dong Zhu, Dong Zhu, Yuan Ge, Weiping Chen, Wentao Jiao, Xin Zhang, Siyi Liu, Ju‐Pei Shen, Ke‐Qing Xiao, Wei Dong Fu, Songlin Wu, Yong‐Guan Zhu

Journal of Environmental Sciences

2025

Membrane filtration as an effective alternative to manual isolation for soil tardigrade DNA extraction

Zi-Kai Liu, Weidong Chen, Ju‐Pei Shen, Zi‐Yang He, Hang‐Wei Hu, Dan‐Ting Yu, Ji‐Zheng He

Soil Biology and Biochemistry

2025

Comammox bacteria dominates the co-occurrence interaction patterns within the ammonia-oxidizing microbial network in glacier forelands

Hanxia Yu, Zikai Liu, Jun Zeng, Akhter Hossain, Hui Zhang, Zhongqin Li, Ju‐Pei Shen

Applied Soil Ecology

2025

Land use changes alter microbial functional gene diversity and its relationship with soil ecosystem multifunctionality in a subtropical estuary

Zi-Kai Liu, Lige Zhang, Sheng‐Sheng Jin, Hanxia Yu, Ji‐Zheng He, Ju‐Pei Shen

Frontiers in Microbiology

2025

The spatial patterns of bacterial communities in suspended particulate matter across the inner Great Barrier Reef

Mohammad Bahadori, Chengrong R. Chen, Stephen Lewis, Juntao Wang, Ju‐Pei Shen, Tom Stevens

Journal of Soils and Sediments

2025

Transcriptional activity of ammonia oxidisers in response to soil temperature, moisture and nitrogen amendment

Chris Chisholm, Hong Jie Di, Keith C. Cameron, Andriy Podolyan, Ju‐Pei Shen, Limei Zhang, Kosala Sirisena, Xueying Che

Frontiers in Microbiology

2025

Drivers of protistan communities in a subtropical coastal wetland: roles of plant types and soil depths

Zi-Kai Liu, Lu Li, Bowen Huang, Luhong Zhou, Yongxin Lin, Ping Yang, Ju‐Pei Shen, Weidong Chen

CATENA

2025

Glutathione Increases Phosphorus Availability Via Stimulating Phosphatase Activities in Four Soil Types in Northeast China

Chenran Wu, Ju‐Pei Shen, Yulan Zhang, Nan Jiang, Dongqi Jiang, Zhenhua Chen, Lijun Chen

Journal of soil science and plant nutrition

2025

Response of abundant and rare microbial species to 40-year long-term fertilization practices irrespective of bulk and rhizosphere soils

Zi-Kai Liu, Lige Zhang, Xingzhu Ma, Weidong Chen, Yuhai Chang, Yue Zhao, Xiaoyu Hao, Shengjing Shi, Ju‐Pei Shen

Environmental Research

2025

Millimeter-scale niche differentiation of N-cycling microorganisms across the soil-water interface has implications for N2O emissions from wetlands

Yu-Jia Cai, Hongyang Zhang, Xiao-Ran Hu, Yu-Chen Yang, Christina Hazard, Graeme W. Nicol, Ji‐Zheng He, Ju‐Pei Shen, Zi‐Yang He, Lu Zhang, Jinghui Zhang, Hao Liu, Sha Zhang, Zheng Chen

The ISME Journal

2024

Soil ecosystem multifunctionality is strongly linked with crop yield after four decades chemical fertilization in black soil

Huiyu Deng, Xingzhu Ma, Zikai Liu, Hangwei Hu, Hong J. Di, Yanji Liu, Shengjing Shi, Xiaoyu Hao, Yue Zhao, Ji-Zheng He, Jupei Shen

Agriculture Ecosystems & Environment,Vol. 368

2024

东北典型黑土区土壤有机碳结构特征及其影响因素

朱张羽,方华军,沈菊培,韩丽丽,宋晓桐,刘四义,张丽梅

《生态学报》,Vol. 44, No. 21

2024

土壤脲酶酶促反应对3种有机氮肥施用的响应

李佳旺,徐嘉,于航,罗慧,沈菊培,陈超,白鑫,岳中辉

《中国生态农业学报(中英文)》

2024

基于CiteSpace文献计量的畜禽粪便抗生素抗性基因研究进展与热点分析

徐超蝶,沈菊培,贺纪正

《微生物学通报》

2024

长期施肥处理对东北黑土真菌多样性和群落结构的影响

邓慧玉,刘子恺,马星竹,郝小雨,赵月,沈菊培,贺纪正

《福建师范大学学报(自然科学版)》

2024

Nitrification inhibitor induced microbial NH4+-N immobilization improves maize nitrogen use efficiency in strong ammonia oxidation soil

Siyi Liu, Di Wu, Xiaotang Ju, Ju‐Pei Shen, Yi Cheng, Na Deng, Xiaotong Song, Hongjie Di, Peipei Li, Lili Han, An‐Hui Ge, Chuan-Fa Wu, Limei Zhang

Soil Biology and Biochemistry

2024

Nitrification inhibitor chlorate and nitrogen substrates differentially affect comammox Nitrospira in a grassland soil

Anish Shah, Pei-Chun Hsu, Chris Chisholm, Andriy Podolyan, Keith C. Cameron, Jiafa Luo, Roland Stenger, Sam T. Carrick, Wei Hu, Scott A. Ferguson, Wenhua Wei, Ju‐Pei Shen, Limei Zhang, Hongbin Liu, Tongke Zhao, Wenxue Wei, Weixin Ding, Hong Pan, Yimeng Liu, Bowen Li, Jianjun Du, Hong Jie Di

Frontiers in Microbiology

2024

Land use conversion to uplands significantly increased the risk of antibiotic resistance genes in estuary area

Ju‐Pei Shen, Dan‐Ting Yu, Zi-Kai Liu, Hongjie Di, Ji‐Zheng He

Environment International

2024

[Effects of 40 Years of Fertilizer Application on the Characteristics of Soil Enzymatic Stoichiometry in Black Soil].

Huiyu Deng, Xing-Zhu Ma, Zikai Liu, Yan-Ji Liu, Xiaoyu Hao, Yue Zhao, Ji‐Zheng He, Ju‐Pei Shen

PubMed

2024

Contrasting response of comammox Nitrospira, ammonia oxidising bacteria, and archaea to soil pH and nitrogen inputs

C. Chisholm, Hong Jie Di, Keith C. Cameron, Andriy Podolyan, Ju‐Pei Shen, Li Cheng Zhang, Kosala Sirisena, William Godsoe

The Science of The Total Environment

2024

AOB Nitrosospira cluster 3a.2 (D11) dominates N2O emissions in fertilised agricultural soils

Na Deng, Cécile Gubry‐Rangin, Xiaotong Song, Xiaotang Ju, Siyi Liu, Ju‐Pei Shen, Hongjie Di, Lili Han, Limei Zhang

Journal of Environmental Management

2023

猪粪及其生物堆肥对小麦幼苗生长和土壤细菌群落结构的影响

邹文萱,罗慧,赵境怡,岳中辉,刘四义,梁爱珍,王新军,束长龙,韩丽丽,沈菊培

《农业资源与环境学报》,Vol. 40, No. 1

2023

亚热带森林菌根植物根系真菌群落结构对氮磷添加的响应

刘珊珊,王全成,史加勉,刘子恺,沈菊培,贺纪正,郑勇

《应用生态学报》

2023

Role of nosZ I-carrying microorganisms in regulating nitrous oxide reduction during forest conversion: A comparison of plantations and a secondary forest in subtropical soils

Milin Deng, Guiping Ye, Hang‐Wei Hu, Chao XU, Ping YANG, Yong ZHENG, Ju‐Pei Shen, Sheng‐Sheng Jin, Ji‐Zheng He, Yongxin Lin

Pedosphere

2023

Impacts of organic materials amendment on the soil antibiotic resistome in subtropical paddy fields

Zongming Li, Ju‐Pei Shen, Ju‐Pei Shen, Fangfang Wang, Meihui Wang, Jianlin Shen, Jianlin Shen, Yong Li, Qihong Zhu, Jinshui Wu

Frontiers in Microbiology

2023

Different responses of soil fauna gut and plant rhizosphere microbiomes to manure applications

Shuai Du, Xiang Zhao, Yue Zhang, Changlong Shu, Ju‐Pei Shen

Soil Ecology Letters

2023

Comammox bacteria and ammonia oxidizing archaea are major drivers of nitrification in glacier forelands

Hanxia Yu, Ju‐Pei Shen, Jun Zeng, Hang‐Wei Hu, Elise G Pendall, Haoyan Xiao, Zikai Liu, Hui Zhang, Hong Jie Di, Zhongqin Li, Ji‐Zheng He

Geoderma

2023

The origin of suspended particulate matter in the Great Barrier Reef

Mohammad Bahadori, Chengrong R. Chen, Stephen Lewis, Juntao Wang, Ju‐Pei Shen, Enqing Hou, Mehran Rezaei Rashti, Qiaoyun Huang, Zoë Bainbridge, Tom Stevens

Nature Communications

2023

Seasonality regulates the taxonomic and functional compositions of protists responding to climate warming in forest ecosystems

Fangfang Li, Anqi Sun, Xiaofei Liu, Peixin Ren, Bingxue Wu, Ju‐Pei Shen, Li Mei Bi, Ji‐Zheng He, Yusheng Yang, Hang‐Wei Hu

Journal of Sustainable Agriculture and Environment

2023

Responses of root-associated fungal community structure of mycorrhizal plants to nitrogen and/or phosphorus addition in a subtropical forest.

Shanshan Liu, Quancheng Wang, Jia-Mian Shi, Zikai Liu, Ju‐Pei Shen, Ji‐Zheng He, Yong Zheng

PubMed

2023

Response of gene abundance of ammonia-oxidizing microorganisms and denitrifying microorganisms to nitrogen and phosphorus addition in subtropical forest.

Yan-Ji Liu, Zikai Liu, Sheng‐Sheng Jin, Huiyu Deng, Ju‐Pei Shen, Ji‐Zheng He

PubMed

2022

不同土地利用方式土壤氨氧化微生物和反硝化微生物时空分布特征

蔡玉佳,沈菊培,张成军,冯虞彦

《生态学报》,Vol. 42, No. 14

2022

Comammox Nitrospira Clade B is the most abundant complete ammonia oxidizer in a dairy pasture soil and inhibited by dicyandiamide and high ammonium concentrations

Pei-Chun Hsu, Hong Jie Di, Keith C. Cameron, Andriy Podolyan, Henry Chau, Jiafa Luo, Blair Miller, Sam T. Carrick, Paul Johnstone, Scott Ferguson, Wenhua Wei, Ju‐Pei Shen, Limei Zhang, Hongbin Liu, Tongke Zhao, Wenxue Wei, Weixin Ding, Hong Pan, Yimeng Liu, Bowen Li

Frontiers in Microbiology

2022

Predatory protists play predominant roles in suppressing soil-borne fungal pathogens under organic fertilization regimes

Peixin Ren, Anqi Sun, Xiaoyan Jiao, Ju‐Pei Shen, Dan‐Ting Yu, Fangfang Li, Bingxue Wu, Ji‐Zheng He, Hang‐Wei Hu

The Science of The Total Environment

2022

Alteration of Manure Antibiotic Resistance Genes via Soil Fauna Is Associated with the Intestinal Microbiome

Shuai Du, Yue Zhang, Ju‐Pei Shen, Hang‐Wei Hu, Jie Zhang, Changlong Shu, Ji‐Zheng He

mSystems

2022

Climate warming increases the proportions of specific antibiotic resistance genes in natural soil ecosystems

Zixin Li, Anqi Sun, Xiaofei Liu, Qing‐Lin Chen, Li Mei Bi, Peixin Ren, Ju‐Pei Shen, Sheng‐Sheng Jin, Ji‐Zheng He, Hang‐Wei Hu, Yusheng Yang

Journal of Hazardous Materials

2022

Soil Moisture is a Primary Driver of Comammox Nitrospira Abundance in New Zealand Soils

Chris Chisholm, Hong Jie Di, Keith C. Cameron, Andriy Podolyan, Anish Shah, Lisa Hsu, Ju‐Pei Shen

The Science of The Total Environment

2021

Soil organic matter and geochemical characteristics shape microbial community composition and structure across different land uses in an Australian wet tropical catchment

Mohammad Bahadori, Juntao Wang, Ju‐Pei Shen, Stephen Lewis, Mehran Rezaei Rashti, Chengrong R. Chen

Land Degradation and Development

2021

Attenuation of antibiotic resistance genes in livestock manure through vermicomposting via Protaetia brevitarsis and its fate in a soil-vegetable system

Xiang Zhao, Ju‐Pei Shen, Changlong Shu, Sheng‐Sheng Jin, Hong Jie Di, Limei Zhang, Ji‐Zheng He

The Science of The Total Environment

2021

Fumigation practice combined with organic fertilizer increase antibiotic resistance in watermelon rhizosphere soil

Shuai Du, An‐Hui Ge, Zhihuai Liang, Ji‐Fang Xiang, Jiling Xiao, Yi Zhang, Yu‐Rong Liu, Limei Zhang, Ju‐Pei Shen

The Science of The Total Environment

2018

不同放牧强度下土壤氨氧化和反硝化微生物的变化特征

孙翼飞,沈菊培,张翠景,韩国栋,红梅,赵巴音那木拉,贺纪正

《生态学报》,Vol. 38, No. 8

2018

珠穆朗玛峰不同海拔梯度上土壤细菌和真菌群落变化特征

张丹丹,张丽梅,沈菊培,旺姆

《生态学报》,Vol. 38, No. 7

2017

模拟水位下降与刈割对高寒湿地土壤氨氧化与反硝化微生物的影响

孙翼飞,沈菊培,张翠景,孙书存,贺纪正

《农业环境科学学报》,Vol. 36, No. 11

2016

厌氧铵氧化过程中关键酶及相关分子标记在生态学研究中的应用进展

白刃,贺纪正,沈菊培,陈新,张丽梅

《生态学报》,Vol. 36, No. 13

2015

Vertical Distribution of Soil Denitrifying Communities in a Wet Sclerophyll Forest under Long-Term Repeated Burning

Xian Liu, Chengrong Chen, Weijin Wang, Jane M. Hughes, Tom Lewis, Enqing Hou, Jupei Shen

Microbial Ecology,Vol. 700, No. 40

2015

奇妙的古菌——奇古菌(Thaumarchaeota)的代谢和功能多样性

张丽梅,沈菊培,贺纪正

《科学观察》,Vol. 10, No. 6

2014

硝化抑制剂的微生物抑制机理及其应用

张苗苗,沈菊培,贺纪正,张丽梅

《农业环境科学学报》,Vol. 33, No. 11

2013

一个红壤剖面微生物群落的焦磷酸测序法研究

袁超磊,贺纪正,沈菊培,戴宇,张丽梅

《土壤学报》

2012

土壤宏基因组学研究方法与进展

贺纪正,袁超磊,沈菊培,张丽梅

《土壤学报》

2012

古菌细胞膜脂在古菌群落组成及其对环境响应研究中的应用

曹鹏,沈菊培,贺纪正

《应用生态学报》

2012

土壤硝化作用的新机理——氨氧化古菌在酸性土壤氨氧化中的主导作用

贺纪正,沈菊培,张丽梅

《科学观察》

2009

土壤中温泉古菌研究进展

贺纪正,沈菊培,张丽梅

《生态学报》

2006

土壤宏基因组学技术及其应用

沈菊培,张丽梅,郑袁明,朱永官,贺纪正

《应用生态学报》

2005

草甸棕壤水稻田磷酸酶活性及对施肥措施的响应

沈菊培,陈振华,陈利军

《应用生态学报》

会议论文

2006

长期施肥对土壤硝态氮和铵态氮分布的影响

沈菊培,张丽梅,郑袁明,贺纪正

《中国生态学会2006学术年会》

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