张世忠｜山东农业大学｜学者主页

2026

苹果根系生物学特性及其调控技术

张世忠，王兆顺，孙黎明，马红喜，束怀瑞，邢鑫

《落叶果树》

2026

Pan-species genome-wide evolution of the RGF peptide gene family and its impact on adventitious root regeneration in apple

Yi Wang, Yupeng Zhang, Yu Zhang, Hao Tan, Lu Liu, Shuxin Xu, Jinghua Qu, Yafei Shu, Xiaoliang Wu, Ruirui Xu, Shizhong Zhang

Horticulture Research

DOI

2026

A TAF10‐ERF109 Transcriptional Module Directs Flavonoid‐Based Stress Resilience and Yield Enhancement in Foxtail Millet and Wheat

Meng Zhang, Kangwei Wang, Jia-Yin Fan, Yue Zheng, Qi Zhang, Hao Du, Shenghui Xiao, Jinguang Huang, K. Yan, Shi-Zhong Zhang, Qiang He, Guan-Qing Jia, Chengchao Zheng, Xianmin Diao, Guodong Yang, Changai Wu

Plant Biotechnology Journal

DOI

2026

The ZAT7-OTU11-DOA9-CYS13 module enhances salt resistance via suppressing NPF2.4-mediated chloride uptake in Arabidopsis.

Chun-Yan Wang, Miao Liu, Changai Wu, Guodong Yang, K. Yan, Shi-Zhong Zhang, Chengchao Zheng, Jin-Guang Huang

Plant Communications

DOI

2026

Unraveling branch point–driven SR45a splicing dynamics in heat stress for plant adaptation

Wei-Bo Xu, Meng Wang, Xue-Han Zhang, Qian-Huan Guo, Peng Liu, Changai Wu, Guodong Yang, Jin-Guang Huang, Shi-Zhong Zhang, Chengxia Zheng, Kang Yan

Science Advances

DOI

2025

The pan genome analysis of WOX gene family in apple and the two sides of MdWUS-1 in promoting leaf-borne shoot

Lin Liu, Yafei Shu, Yue Wang, Mingyue Liu, Shang‐Zhong Xu, Xiaofan Lu, Yu Zhang, Luyao Yu, Ze Tao, Jiale Wang, Bingkun Ge, Pengzhen Cui, Changai Wu, Jinguang Huang, Kang Yan, Chengchao Zheng, Guodong Yang, Xin Tian, Shizhong Zhang

Horticulture Research

DOI

2025

Arabidopsis MAPKKK18–MAPKK3–MAPK1/2/7/14 cascade positively regulates flowering by phosphorylating NF‐YB2

Huixian Cai, Shuo Wang, Yingfang Shao, Changai Wu, Guodong Yang, Kang Yan, Shizhong Zhang, Chengchao Zheng, Jinguang Huang

Journal of Integrative Plant Biology

DOI

2025

SRAS1.1 E3 ligase mediates DSK2A degradation to regulate autophagy and drought tolerance in Arabidopsis

Xiaohu Li, Meng Wang, Yi-Ran Xu, Qian‐Huan Guo, Peng Liu, Changai Wu, Guodong Yang, Jinguang Huang, Shizhong Zhang, Chengchao Zheng, Kang Yan

EMBO Reports

DOI

2025

Involvement of the miR156/SPLs/NLP7 modules in plant lateral root development and nitrogen uptake

Ruirui Xu, Peng Wang, Yunning Pang, Huilian Liu, Tianpeng Zhang, Ying Li, Shizhong Zhang

Planta

DOI

2025

MhIDA small peptides modulate the growth and development of roots in Malus hupehensis

Rui Xu, Shuna Jiang, Hongjuan Ge, Bu-Hang Zhang, Jing Shu, Tian-Peng Zhang, Li-Jun Cao, Shi-Zhong Zhang

Plant Cell Reports

DOI

2025

Detecting the physiological and molecular mechanisms by which abscisic acid (ABA) regulates the consistency of sweet cherry fruit maturity

Qian Qiao, Bingxue Shen, K. Lin, Dong-Zi Zhu, Po Hong, Lisi Zhang, Jia-Zheng Sun, Shan Sun, Yun Gao, Shi-Zhong Zhang, Jia-Wei Wang, Qing-Zhong Liu

Scientific Reports

DOI

2025

Regulation of the non-selective Na+ importer capacity of NRT1.2/NPF4.6/AIT1 by SOS2-mediated phosphorylation in Arabidopsis.

Xiaoxiao Liu, Lei Zhang, Zeqi Zhao, Yue Zheng, Yue Ren, Xiao-Min Zhao, Shi-Zhong Zhang, Guodong Yang, Jinguang Huang, K. Yan, Chun-Long Li, Chengchao Zheng, Chang-Ai Wu

Cell Reports

DOI

2024

Small peptide SiDVL/RTFLs from foxtail millet inhibit root growth through repressing auxin signaling in transgenic Arabidopsis

Chunyan Wang, Tongtong Wang, Miao Liu, Shizhong Zhang, Changai Wu

Plant Cell Reports

DOI

2024

An efficient genetic transformation system mediated by Rhizobium rhizogenes in fruit trees based on the transgenic hairy root to shoot conversion

Lin Liu, Jinghua Qu, Chunyan Wang, Miao Liu, Chunmeng Zhang, Xinyue Zhang, Cheng Guo, Changai Wu, Guodong Yang, Jinguang Huang, Kang Yan, Huairui Shu, Chengchao Zheng, Shizhong Zhang

Plant Biotechnology Journal

DOI

2024

N-glycosylation of SnRK2s affects NADPH maintenance in peroxisomes during prolonged ABA signalling

Junyao Lu, Ning Li, Gaojian Li, Ziang Tian, Lianping Shi, Yan Wang, Yingao Cai, Kaiyuan Zhang, Wanting Sun, Danyang Wang, Jinxin Lin, Jinguang Huang, Changai Wu, Kang Yan, Shizhong Zhang, Chengchao Zheng, Guodong Yang

Nature Communications

DOI

2024

A long non-coding RNA functions as a competitive endogenous RNA to modulate TaNAC018 by acting as a decoy for tae-miR6206

Wei-Bo Xu, Qian-Huan Guo, Peng Liu, Shuang Dai, Changai Wu, Guodong Yang, Jin-Guang Huang, Shi-Zhong Zhang, Jian-Min Song, Chengchao Zheng, K. Yan

Plant Molecular Biology

DOI

2023

Intronic microRNA‐directed regulation of mitochondrial reactive oxygen species enhances plant stress tolerance in Arabidopsis

Wei‐Bo Xu, Lei Zhao, Peng Liu, Qian‐Huan Guo, Changai Wu, Guodong Yang, Jinguang Huang, Shuxin Zhang, Shuxin Zhang, Xingqi Guo, Shizhong Zhang, Shizhong Zhang, Chengchao Zheng, Kang Yan

New Phytologist

DOI

2023

Regulation of drought tolerance in Arabidopsis involves the PLATZ4 ‐mediated transcriptional repression of plasma membrane aquaporin PIP2;8

Miao Liu, Chunyan Wang, Zhen Ji, Junyao Lu, Lei Zhang, Chunlong Li, Jinguang Huang, Guodong Yang, Kang Yan, Shizhong Zhang, Chengchao Zheng, Changai Wu

The Plant Journal

DOI

2023

Tyrosylprotein sulfotransferase suppresses ABA signaling via sulfation of SnRK2.2/2.3/2.6

Jun Wang, Chunyan Wang, Tianrun Wang, Shizhong Zhang, Kang Yan, Guodong Yang, Changai Wu, Chengchao Zheng, Jinguang Huang

Journal of Integrative Plant Biology

DOI

2023

SiPLATZ12 transcription factor negatively regulates salt tolerance in foxtail millet (Setaria italica) by suppressing the expression of SiNHX, SiCBL and SiSOS genes

Shenghui Xiao, Lin-Lin Zhang, Yiman Wan, Shan Tang, Y. Sui, Yichao Bai, Yan Wang, Miao Liu, Jia-Yin Fan, Shi-Zhong Zhang, Jinguang Huang, Guodong Yang, K. Yan, Xianmin Diao, Cheng-Chao Zheng, Chang-Ai Wu

Environmental and Experimental Botany

DOI

2023

BREVIPEDICELLUS Positively Regulates Salt-Stress Tolerance in Arabidopsis thaliana

Hui-ming Cai, Yang Xu, K. Yan, Shi-Zhong Zhang, Guodong Yang, Chang-Ai Wu, Cheng-Chao Zheng, Jinguang Huang

International Journal of Molecular Sciences

DOI

2022

DEMETHYLATION REGULATOR 1 regulates DNA demethylation of the nuclear and mitochondrial genomes

Zhen Wang, Hao Zheng, Jinguang Huang, Guodong Yang, Kang Yan, Shizhong Zhang, Changai Wu, Chengchao Zheng

Journal of Integrative Plant Biology

DOI

2022

Maize Heat Up-regulated Gene 1 Plays Vital Roles in Thermoresistance.

Chen Xie, Liu Yang, Guixiang Jia, K. Yan, Shi-Zhong Zhang, Guo-Dong Yang, Chang-Ai Wu, Y. Gai, Cheng-Chao Zheng, Jinguang Huang

Journal of Experimental Botany

DOI

2022

Chromosome-level genome assembly provides new insights into Japanese chestnut (Castanea crenata) genomes

Jia-Wei Wang, Po Hong, Qian Qiao, Dong-Zi Zhu, Li-Si Zhang, Ke Lin, Shan Sun, Shuna Jiang, Bingxue Shen, Shi-Zhong Zhang, Qing-Zhong Liu

Frontiers in Plant Science

DOI

2022

Genome-wide analysis of the apple family 1 glycosyltransferases identified a flavonoid-modifying UGT, MdUGT83L3, which is targeted by MdMYB88 and contributes to stress adaptation.

Yanjie Li, Pan Li, Lei Zhang, J. Shu, M. Court, Zhuojing Sun, Lepu Jiang, Cheng-Chao Zheng, Huai-rui Shu, L. Ji, Shi-Zhong Zhang

Plant Science

DOI

2022

Growth or stress responses: TMK-FER balancing act.

Lei Zhang, Shi-Zhong Zhang, Cheng-Chao Zheng

Trends in Plant Science

DOI

2022

Root Breeding in the Post-Genomics Era: From Concept to Practice in Apple

Zhou Zhou, Lei Zhang, J. Shu, Mengyu Wang, Han-Hao Li, Huai-rui Shu, Xiaoyun Wang, Qinghua Sun, Shi-Zhong Zhang

Plants

DOI

2022

SiPLATZ12 transcript factor regulates multiple yield traits and salt tolerance in foxtail millet (Setaria italica)

Shenghui Xiao, Yiman Wan, Lin-Lin Zhang, Sha Tang, Y. Sui, Yichao Bai, Yan Wang, Miao Liu, Jia-Yin Fan, Shi-Zhong Zhang, Jinguang Huang, Guo-Dong Yang, K. Yan, Xianmin Diao, Cheng-Chao Zheng, Chang-Ai Wu

bioRxiv

DOI

2022

Identification of MdGRF genes and the necessary role of MdGRF02 in apple root growth regulation

Rui-Rui Xu, Ming Gao, Ming Li, S. Whitham, Shi-Zhong Zhang, Yang Xu

Scientia Horticulturae

DOI

2021

Regulation of the Stability and ABA Import Activity of NRT1.2/NPF4.6 by CEPR2-mediated Phosphorylation in Arabidopsis.

Lei Zhang, Zipeng Yu, Yang Xu, Miao Yu, Yue Ren, Shi-Zhong Zhang, Guodong Yang, Jinguang Huang, K. Yan, Chengchao Zheng, Chang-Ai Wu

Molecular Plant

DOI

2021

Dual roles of the Serine/Arginine-rich splicing factor SR45a in promoting and interacting with nuclear cap-binding complex to modulate the salt stress response in Arabidopsis.

Ying Li, Qian-Huan Guo, Peng Liu, Jinguang Huang, Shi-Zhong Zhang, Guo-Dong Yang, Chang-Ai Wu, Cheng-Chao Zheng, K. Yan

New Phytologist

DOI

2021

SiCEP3, a C-terminally encoded peptide from Setaria italica, promotes ABA import and signaling.

Lei Zhang, Yue Ren, Qian Xu, Yiman Wan, Shi-Zhong Zhang, Guo-Dong Yang, Jinguang Huang, K. Yan, Cheng-Chao Zheng, Chang-Ai Wu

Journal of Experimental Botany

DOI

2021

The thiol-disulfide exchange activity of AtPDI1 is involved in the response to abiotic stresses

Ying Lu, Li Yuan, Zhou Zhou, Mengyu Wang, Xiaoyun Wang, Shi-Zhong Zhang, Qinghua Sun

BMC Plant Biology

DOI

2021

Identification and functional characterization of a new flavonoid synthase gene MdFLS1 from apple

Pan Li, K. Lei, Lin Liu, Gui-Zhi Zhang, Hong-Juan Ge, Cheng-Chao Zheng, Huai-rui Shu, Shi-Zhong Zhang, L. Ji

Planta

DOI

2021

Molecular mechanism behind the involvement of apple flavonoid glycosyltransferase gene MdGT1 in the color of apple leaves

Pan Li, Hong-Juan Ge, Lei Zhang, J. Shu, Zhuojing Sun, Le Jiang, Cheng-Chao Zheng, Huai-rui Shu, Guang-li Sha, L. Ji, Shi-Zhong Zhang

2021

Salt responsive alternative splicing of a RING finger E3 ligase modulates the salt stress tolerance by fine-tuning the balance of COP9 signalosome subunit 5A

Yuan Zhou, Xiao-Hu Li, Qian-Huan Guo, Peng Liu, Ying Li, Chang-Ai Wu, Guo-dong Yang, Jinguang Huang, Shi-Zhong Zhang, Cheng-Chao Zheng, K. Yan

PLoS Genetics

DOI

2020

Chromosome-scale genome assembly of sweet cherry (Prunus avium L.) cv. Tieton obtained using long-read and Hi-C sequencing

Jia-Wei Wang, Weizhen Liu, Dong-Zi Zhu, Po Hong, Shi-Zhong Zhang, Shi-Jun Xiao, Yue Tan, Xin Chen, Li Xu, X. Zong, Li-Si Zhang, Hai-Rong Wei, Xiao-Hui Yuan, Qing-Zhong Liu

Horticulture Research

DOI

2020

AtPLATZ2 negatively regulates salt tolerance in Arabidopsis seedlings by directly suppressing the expression of the CBL4/SOS3 and CBL10/SCaBP8 genes.

Sha-Sha Liu, Rui-Ying Yang, Miao Liu, Shi-Zhong Zhang, K. Yan, Guo-Dong Yang, Jinguang Huang, Cheng-Chao Zheng, Chang-Ai Wu

Journal of Experimental Botany

DOI

2020

The CEPR 2-mediated phosphorylation of NRT 1 . 2 mainly regulates ABA import in 1 Arabidopsis 2

Zipeng Yu, Lei Zhang, Yang Xu, Miao Yu, Shi-Zhong Zhang, Guo-Dong Yang, Jinguang Huang, K. Yan, Cheng-Chao Zheng, Chang-Ai Wu

2020

Function identification of MdTIR1 in apple root growth benefited from the predicted MdPPI network

Lin Liu, Zipeng Yu, Yang Xu, Cheng Guo, Lei Zhang, Chang-Ai Wu, Guo-Dong Yang, Jinguang Huang, K. Yan, Huai-rui Shu, Cheng-Chao Zheng, Shi-Zhong Zhang

DOI

2020

Ethylenediaminetetraacetic acid promotes the accumulation of nitric oxide

Shi-Zhong Zhang, Sha-Sha Liu, Sheng-Ping Xiao, Min Li, Jinguang Huang, K. Yan, Guo-Dong Yang, Cheng-Chao Zheng, Chang-Ai Wu

bioRxiv

DOI

2020

Correction: Genome-Wide Comparative In Silico Analysis of the RNA Helicase Gene Family in Zea mays and Glycine max: A Comparison with Arabidopsis and Oryza sativa

Rui-Rui Xu, Shi-Zhong Zhang, Jinguang Huang, Cheng-Chao Zheng

PLoS ONE

DOI

2020

Genome-wide identification and expression analysis of asparagine synthetase family in apple

Xi-Sen Yuan, Zipeng Yu, Lin Liu, Yang Xu, Lei Zhang, De-Guo Han, Shi-Zhong Zhang

DOI

2020

The Brassicaceae-specific secreted peptides, STMPs, function in plant growth and pathogen defense.

Zipeng Yu, Yang Xu, Lifei Zhu, Lei Zhang, Lin Liu, Di Zhang, Dandan Li, Chang-Ai Wu, Jinguang Huang, Guo-Dong Yang, K. Yan, Shi-Zhong Zhang, Cheng-Chao Zheng

Journal of Integrative Plant Biology

DOI

2019

CEPR2 phosphorylates and accelerates the degradation of PYR/PYLs in Arabidopsis

Zipeng Yu, Di Zhang, Yang Xu, Songsong Jin, Lei Zhang, Shi-Zhong Zhang, Guo-Dong Yang, Jinguang Huang, K. Yan, Chang-Ai Wu, Cheng-Chao Zheng

Journal of Experimental Botany

DOI

2019

CYSTM3 negatively regulates salt stress tolerance in Arabidopsis

Yang Xu, Zipeng Yu, Shi-Zhong Zhang, Chang-Ai Wu, Guo-Dong Yang, K. Yan, Cheng-Chao Zheng, Jinguang Huang

Plant Molecular Biology

DOI

2019

The expression of a tubby-like protein from Malus domestica (MdTLP7) enhances abiotic stress tolerance in Arabidopsis

Jianing Xu, S. Xing, Qinghua Sun, Chun-Yan Zhan, Xin Liu, Shi-Zhong Zhang, Xiaoyun Wang

BMC Plant Biology

DOI

2019

SES1 positively regulates heat stress resistance in Arabidopsis.

Peiyan Guan, Jun Wang, Chen Xie, Chang-Ai Wu, Guo-Dong Yang, K. Yan, Shi-Zhong Zhang, Cheng-Chao Zheng, Jinguang Huang

Biochemical and Biophysical Research Communications - BBRC

DOI

2019

A B-box zinc finger protein, MdBBX10, enhanced salt and drought stresses tolerance in Arabidopsis

Xin Liu, R. Li, Yaqing Dai, Li Yuan, Qinghua Sun, Shi-Zhong Zhang, Xiaoyun Wang

Plant Molecular Biology

DOI

2019

The Importance of Conserved Serine for C-Terminally Encoded Peptides Function Exertion in Apple

Zipeng Yu, Yang Xu, Lin Liu, Yarong Guo, Xi-Sen Yuan, Xinyu Man, Chang Liu, Guo-Dong Yang, Jinguang Huang, K. Yan, Cheng-Chao Zheng, Chang-Ai Wu, Shi-Zhong Zhang

International Journal of Molecular Sciences

DOI

2019

Genome-Wide Analysis of mRNA Splicing vaRiants in Higher Plants

Ying Li, Qian-Huan Guo, Cheng-Chao Zheng, Shi-Zhong Zhang, K. Yan

DOI

2018

植物地下部与地上部远端相互调控研究进展

满欣雨，郭亚蓉，葛红娟，沙广利，张世忠

《植物生理学报》

2018

SENSITIVE TO SALT1, An Endoplasmic Reticulum-Localized Chaperone, Positively Regulates Salt Resistance1

Peiyan Guan, Jun Wang, Hui Li, Chen Xie, Shi-Zhong Zhang, Chang-Ai Wu, Guo-Dong Yang, K. Yan, Jinguang Huang, Cheng-Chao Zheng

Plant Physiology

DOI

2018

CYSTM, a Novel Non-Secreted Cysteine-Rich Peptide Family, Involved in Environmental Stresses in Arabidopsis thaliana

Yang Xu, Zipeng Yu, Di Zhang, Jinguang Huang, Chang-Ai Wu, Guo-Dong Yang, K. Yan, Shi-Zhong Zhang, Cheng-Chao Zheng

Plant and Cell Physiology

DOI

2017

Global evolution and expression analysis of BTB-containing ankyrin repeat genes in plants

Peiyan Guan, Li-Xue Sun, Rui-Ying Yang, Huiyang Gao, Pu Liu, Cheng-Chao Zheng, Shi-Zhong Zhang

DOI

2017

Apple, from omics to systemic function

Lin Liu, Xiao-cui Luo, Hong-Juan Ge, Cheng Guo, Guang-li Sha, Ze-sheng Jiang, Shi-Zhong Zhang, Huai-rui Shu

Plant growth regulation (Print)

DOI

2017

Genome expression profile analysis of two types of new roots in apple rootstock via Solexa sequencing

Cheng Guo, Hong-juan Ge, Iin Liu, Yarong Guo, Bingkun Ge, Ze-sheng Jiang, Shi-Zhong Zhang

DOI

2017

Genome-wide identification and phylogenetic, comparative genomic, alternative splicing, and expression analyses of TCP genes in plants

Rui-Rui Xu, Huiyang Gao, Shi-Zhong Zhang, Pu Liu, Xiao-Fei Wang, Yu-Jin Hao

DOI

2017

Global Identification, Classification, and Expression Analysis of MAPKKK genes: Functional Characterization of MdRaf5 Reveals Evolution and Drought-Responsive Profile in Apple

Mei-Hong Sun, Yang Xu, Jinguang Huang, Ze-sheng Jiang, Huai-rui Shu, Hua-Sen Wang, Shi-Zhong Zhang

Scientific Reports

DOI

2017

Arabidopsis MAPKKK18 positively regulates drought stress resistance via downstream MAPKK3.

Yuanyuan Li, Hui-ming Cai, Pu Liu, Chun-Yan Wang, Huiyang Gao, Chang-Ai Wu, K. Yan, Shi-Zhong Zhang, Jinguang Huang, Cheng-Chao Zheng

Biochemical and Biophysical Research Communications - BBRC

DOI

2016

Global identification and expression analysis of stress-responsive genes of the Argonaute family in apple

Rui-Rui Xu, Caiyun Liu, Ning Li, Shi-Zhong Zhang

Zeitschrift für Induktive Abstammungs- und Vererbungslehre

DOI

2016

Genome-wide comparative analysis of the codon usage patterns in plants

Ning Li, Yuanyuan Li, Cheng-Chao Zheng, Jinguang Huang, Shi-Zhong Zhang

Genes & Genomics

DOI

2016

Genome-wide analysis of the synonymous codon usage patterns in apple

Ning Li, Mei-Hong Sun, Ze-sheng Jiang, Huai-rui Shu, Shi-Zhong Zhang

DOI

2015

Genome-wide analysis of NAM-ATAF1,2-CUC2 transcription factor family in Solanum lycopersicum

Hong-Yan Su, Shi-Zhong Zhang, Yan-Lei Yin, Dong-Zi Zhu, Li-Ya Han

Journal of Plant Biochemistry and Biotechnology

DOI

2014

Genomewide identification and expression analysis of the ARF gene family in apple

Xiao-cui Luo, Mei-Hong Sun, Rui-Rui Xu, Huai-rui Shu, JIA-WEI Wang, Shi-Zhong Zhang

Journal Genetika

DOI

2014

A genome-wide analysis of the expansin genes in Malus × Domestica

Shi-Zhong Zhang, Rui-Rui Xu, Zheng Gao, Chang-Tian Chen, Ze-sheng Jiang, Huai-rui Shu

Zeitschrift für Induktive Abstammungs- und Vererbungslehre

DOI

2014

Gene expression profiling of rootstock ‘140Ru’ and Vitis vinifera L. cv. ‘Crimson Seedless’ grape roots infected with grape phylloxera

Yuan-Peng Du, En-Shun Jiang, Feng-Pan Wang, Shi-Zhong Zhang, H. Zhai

Plant growth regulation (Print)

DOI

2014

Genomewide analysis of TCP transcription factor gene family in Malus domestica

Rui-Rui Xu, P. Sun, Fengjuan Jia, Longtao Lu, Yuanyuan Li, Shi-Zhong Zhang, Jinguang Huang

Journal Genetika

DOI

2014

Genomewide analysis of LATERAL ORGAN BOUNDARIES Domain gene family in Zea mays

Yuemin Zhang, Shi-Zhong Zhang, Cheng-Chao Zheng

Journal Genetika

DOI

2013

苹果锚蛋白基因ANK家族生物信息学鉴定分析

许瑞瑞，张世忠，宿红艳，刘春香，曹慧，束怀瑞

《园艺学报》

DOI

2013

Expression analysis of GmPATs genes in Glycine max.

Xiaowei Yuan, Shi-Zhong Zhang, Mei-Hong Sun, Shi-Yang Liu, B. Qi, Xin-Zheng Li

DOI

2013

Genome Wide Analysis of the Apple MYB Transcription Factor Family Allows the Identification of MdoMYB121 Gene Confering Abiotic Stress Tolerance in Plants

Zhong-Hui Cao, Shi-Zhong Zhang, Rong-Kai Wang, Rui-Fen Zhang, Yu-Jin Hao

PLoS ONE

DOI

2013

Genome-wide identification and expression analysis of MAPK and MAPKK gene family in Malus domestica.

Shi-Zhong Zhang, Rui-Rui Xu, Xiao-cui Luo, Ze-sheng Jiang, Huai-rui Shu

Gene

DOI

2013

Apple gene function and gene family database: an integrated bioinformatics database for apple research

Shi-Zhong Zhang, Guang-Hui Chen, Yukun Liu, Hao Chen, Guo-Dong Yang, Xiaowei Yuan, Ze-sheng Jiang, Huai-rui Shu

Plant growth regulation (Print)

DOI

2013

The primers used for real-time PCR of ZmPATs genes in Zea mays .

Xiaowei Yuan, Shi-Zhong Zhang, Mei-Hong Sun, Shi-Yang Liu, B. Qi, Xin-Zheng Li

DOI

2013

Genome-Wide Comparative In Silico Analysis of the RNA Helicase Gene Family in Zea mays and Glycine max: A Comparison with Arabidopsis and Oryza sativa

Rui-Rui Xu, Shi-Zhong Zhang, Jinguang Huang, Cheng-Chao Zheng

PLoS ONE

DOI

2013

Superfamily of ankyrin repeat proteins in tomato.

Xiaowei Yuan, Shi-Zhong Zhang, Xiaohe Qing, Mei-Hong Sun, Shi-Yang Liu, Hong-Yan Su, Huai-rui Shu, Xin-Zheng Li

Gene

DOI

2013

Phylogenetic relationships between the PATs in plants.

Xiaowei Yuan, Shi-Zhong Zhang, Meihong Sun, Shi-Yang Liu, Bao Qi, Xin-Zheng Li

DOI

2013

Putative DHHC-Cysteine-Rich Domain S-Acyltransferase in Plants

Xiaowei Yuan, Shi-Zhong Zhang, Mei-Hong Sun, Shi-Yang Liu, B. Qi, Xin-Zheng Li

PLoS ONE

DOI

2013

A Genome-Wide Analysis of the LBD (LATERAL ORGAN BOUNDARIES Domain) Gene Family in Malus domestica with a Functional Characterization of MdLBD11

Xiao-Fei Wang, Shi-Zhong Zhang, L. Su, Xin Liu, Yu-Jin Hao

PLoS ONE

DOI

2013

Genome-Wide Identification and Analysis of Expression Profiles of Maize Mitogen-Activated Protein Kinase Kinase Kinase

Xiangpei Kong, Wei Lv, Dan Zhang, Shan-Shan Jiang, Shi-Zhong Zhang, De-Quan Li

PLoS ONE

DOI

2013

A genome-wide analysis of the RNA helicase gene family in Solanum lycopersicum.

Rui-Rui Xu, Shi-Zhong Zhang, Longtao Lu, Hui Cao, Cheng-Chao Zheng

Gene

DOI

2013

Evolutionary relationship and gene structure analysis of the OsPATs in Oryza sative .

Xiaowei Yuan, Shi-Zhong Zhang, Mei-Hong Sun, Shi-Yang Liu, B. Qi, Xin-Zheng Li

DOI

2013

Genome-wide analysis and identification of stress-responsive genes of the NAM-ATAF1,2-CUC2 transcription factor family in apple.

Hong-Yan Su, Shi-Zhong Zhang, Xiaowei Yuan, Chang-Tian Chen, Xiao-Fei Wang, Yu-Jin Hao

Plant physiology and biochemistry : PPB

DOI

2013

Global Analysis of Ankyrin Repeat Domain C3HC4-Type RING Finger Gene Family in Plants

Xiaowei Yuan, Shi-Zhong Zhang, Shi-Yang Liu, Ming-Li Yu, Hong-Yan Su, Huai-rui Shu, Xin-Zheng Li

PLoS ONE

DOI

2012

苹果功能基因组数据库的构建与使用

张世忠，付莹，周波，姜泽盛，许瑞瑞，束怀瑞

《园艺学报》

DOI

2012

苹果WRKY转录因子家族基因生物信息学分析

许瑞瑞，张世忠，曹慧，束怀瑞

《园艺学报》

DOI

2008

Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis

Tongtong Xue, Dong Wang, Shi-Zhong Zhang, J. Ehlting, F. Ni, Stephen Jakab, Cheng-Chao Zheng, Yuan Zhong

BMC Genomics

DOI

16 GGCACTTCTTCCATAGACCTT CATCACCCAATTCGTCTTTT MdNAC 24 ACTAGTATTCTGGCGGATGG GGCTGATGATGGCAAGTTCA MdNAC 30 GCCAATATAGATCAGAATC TGTCATCACCGTCAACTTCA MdNAC 32 CGGTTGCTATTATCGCTGAA CTGCCCTATTGGGTCTCG MdNAC 33 CAGCAAGGCCAAGGACAAA TTACTGCCAATGCCCGAAC MdNAC 41 AGGCTGCTTTTGTCGTGTGC AAGATCTCGGTCCAGCCTCA MdNA

Hong-Yan Su, Shi-Zhong Zhang, Xiaowei Yuan, Chang-Tian Chen, Xiao-Fei Wang, Yu-Jin Hao

Comparative genomic analysis of protein phosphatase 2 C gene family in rice and Arabidopsis

J. Núñez, M. J. Greenberg, D. Price, Dagit, Dominique, Tongtong Xue, Shi-Zhong Zhang, J. Ehlting, Cheng-Chao Zheng

精选作品

期刊论文

苹果根系生物学特性及其调控技术

Pan-species genome-wide evolution of the RGF peptide gene family and its impact on adventitious root regeneration in apple

A TAF10‐ERF109 Transcriptional Module Directs Flavonoid‐Based Stress Resilience and Yield Enhancement in Foxtail Millet and Wheat

The ZAT7-OTU11-DOA9-CYS13 module enhances salt resistance via suppressing NPF2.4-mediated chloride uptake in Arabidopsis.

Unraveling branch point–driven SR45a splicing dynamics in heat stress for plant adaptation

The pan genome analysis of WOX gene family in apple and the two sides of MdWUS-1 in promoting leaf-borne shoot

Arabidopsis MAPKKK18–MAPKK3–MAPK1/2/7/14 cascade positively regulates flowering by phosphorylating NF‐YB2

SRAS1.1 E3 ligase mediates DSK2A degradation to regulate autophagy and drought tolerance in Arabidopsis

Involvement of the miR156/SPLs/NLP7 modules in plant lateral root development and nitrogen uptake

MhIDA small peptides modulate the growth and development of roots in Malus hupehensis

Detecting the physiological and molecular mechanisms by which abscisic acid (ABA) regulates the consistency of sweet cherry fruit maturity

Regulation of the non-selective Na+ importer capacity of NRT1.2/NPF4.6/AIT1 by SOS2-mediated phosphorylation in Arabidopsis.

Small peptide SiDVL/RTFLs from foxtail millet inhibit root growth through repressing auxin signaling in transgenic Arabidopsis

An efficient genetic transformation system mediated by Rhizobium rhizogenes in fruit trees based on the transgenic hairy root to shoot conversion

N-glycosylation of SnRK2s affects NADPH maintenance in peroxisomes during prolonged ABA signalling

A long non-coding RNA functions as a competitive endogenous RNA to modulate TaNAC018 by acting as a decoy for tae-miR6206

Intronic microRNA‐directed regulation of mitochondrial reactive oxygen species enhances plant stress tolerance in Arabidopsis

Regulation of drought tolerance in Arabidopsis involves the PLATZ4 ‐mediated transcriptional repression of plasma membrane aquaporin PIP2;8

Tyrosylprotein sulfotransferase suppresses ABA signaling via sulfation of SnRK2.2/2.3/2.6

SiPLATZ12 transcription factor negatively regulates salt tolerance in foxtail millet (Setaria italica) by suppressing the expression of SiNHX, SiCBL and SiSOS genes

BREVIPEDICELLUS Positively Regulates Salt-Stress Tolerance in Arabidopsis thaliana

DEMETHYLATION REGULATOR 1 regulates DNA demethylation of the nuclear and mitochondrial genomes

Maize Heat Up-regulated Gene 1 Plays Vital Roles in Thermoresistance.

Chromosome-level genome assembly provides new insights into Japanese chestnut (Castanea crenata) genomes

Genome-wide analysis of the apple family 1 glycosyltransferases identified a flavonoid-modifying UGT, MdUGT83L3, which is targeted by MdMYB88 and contributes to stress adaptation.

Growth or stress responses: TMK-FER balancing act.

Root Breeding in the Post-Genomics Era: From Concept to Practice in Apple

SiPLATZ12 transcript factor regulates multiple yield traits and salt tolerance in foxtail millet (Setaria italica)

Identification of MdGRF genes and the necessary role of MdGRF02 in apple root growth regulation

Regulation of the Stability and ABA Import Activity of NRT1.2/NPF4.6 by CEPR2-mediated Phosphorylation in Arabidopsis.

Dual roles of the Serine/Arginine-rich splicing factor SR45a in promoting and interacting with nuclear cap-binding complex to modulate the salt stress response in Arabidopsis.

SiCEP3, a C-terminally encoded peptide from Setaria italica, promotes ABA import and signaling.

The thiol-disulfide exchange activity of AtPDI1 is involved in the response to abiotic stresses

Identification and functional characterization of a new flavonoid synthase gene MdFLS1 from apple

Molecular mechanism behind the involvement of apple flavonoid glycosyltransferase gene MdGT1 in the color of apple leaves

Salt responsive alternative splicing of a RING finger E3 ligase modulates the salt stress tolerance by fine-tuning the balance of COP9 signalosome subunit 5A

Chromosome-scale genome assembly of sweet cherry (Prunus avium L.) cv. Tieton obtained using long-read and Hi-C sequencing

AtPLATZ2 negatively regulates salt tolerance in Arabidopsis seedlings by directly suppressing the expression of the CBL4/SOS3 and CBL10/SCaBP8 genes.

The CEPR 2-mediated phosphorylation of NRT 1 . 2 mainly regulates ABA import in 1 Arabidopsis 2

Function identification of MdTIR1 in apple root growth benefited from the predicted MdPPI network

Ethylenediaminetetraacetic acid promotes the accumulation of nitric oxide

Correction: Genome-Wide Comparative In Silico Analysis of the RNA Helicase Gene Family in Zea mays and Glycine max: A Comparison with Arabidopsis and Oryza sativa

Genome-wide identification and expression analysis of asparagine synthetase family in apple

The Brassicaceae-specific secreted peptides, STMPs, function in plant growth and pathogen defense.

CEPR2 phosphorylates and accelerates the degradation of PYR/PYLs in Arabidopsis

CYSTM3 negatively regulates salt stress tolerance in Arabidopsis

The expression of a tubby-like protein from Malus domestica (MdTLP7) enhances abiotic stress tolerance in Arabidopsis

SES1 positively regulates heat stress resistance in Arabidopsis.

A B-box zinc finger protein, MdBBX10, enhanced salt and drought stresses tolerance in Arabidopsis

The Importance of Conserved Serine for C-Terminally Encoded Peptides Function Exertion in Apple

Genome-Wide Analysis of mRNA Splicing vaRiants in Higher Plants

植物地下部与地上部远端相互调控研究进展

SENSITIVE TO SALT1, An Endoplasmic Reticulum-Localized Chaperone, Positively Regulates Salt Resistance1

CYSTM, a Novel Non-Secreted Cysteine-Rich Peptide Family, Involved in Environmental Stresses in Arabidopsis thaliana

Global evolution and expression analysis of BTB-containing ankyrin repeat genes in plants

Apple, from omics to systemic function

Genome expression profile analysis of two types of new roots in apple rootstock via Solexa sequencing

Genome-wide identification and phylogenetic, comparative genomic, alternative splicing, and expression analyses of TCP genes in plants

Global Identification, Classification, and Expression Analysis of MAPKKK genes: Functional Characterization of MdRaf5 Reveals Evolution and Drought-Responsive Profile in Apple

Arabidopsis MAPKKK18 positively regulates drought stress resistance via downstream MAPKK3.

Global identification and expression analysis of stress-responsive genes of the Argonaute family in apple

Genome-wide comparative analysis of the codon usage patterns in plants

Genome-wide analysis of the synonymous codon usage patterns in apple

Genome-wide analysis of NAM-ATAF1,2-CUC2 transcription factor family in Solanum lycopersicum

Genomewide identification and expression analysis of the ARF gene family in apple

A genome-wide analysis of the expansin genes in Malus × Domestica

Gene expression profiling of rootstock ‘140Ru’ and Vitis vinifera L. cv. ‘Crimson Seedless’ grape roots infected with grape phylloxera

Genomewide analysis of TCP transcription factor gene family in Malus domestica

Genomewide analysis of LATERAL ORGAN BOUNDARIES Domain gene family in Zea mays

苹果锚蛋白基因ANK家族生物信息学鉴定分析

Expression analysis of GmPATs genes in Glycine max.

Genome Wide Analysis of the Apple MYB Transcription Factor Family Allows the Identification of MdoMYB121 Gene Confering Abiotic Stress Tolerance in Plants

Genome-wide identification and expression analysis of MAPK and MAPKK gene family in Malus domestica.

Apple gene function and gene family database: an integrated bioinformatics database for apple research

The primers used for real-time PCR of ZmPATs genes in Zea mays .

Genome-Wide Comparative In Silico Analysis of the RNA Helicase Gene Family in Zea mays and Glycine max: A Comparison with Arabidopsis and Oryza sativa

Superfamily of ankyrin repeat proteins in tomato.

Phylogenetic relationships between the PATs in plants.