高珊｜中国海洋大学｜学者主页

2024

Emergence of crucial evidence catalyzing the origin tracing of SARS-CoV-2

Shunmei Chen, Cihan Ruan, Yutong Guo, Jia Chang, Hao-Ming Yan, Liang Chen, Yongzhong Duan, Guang-You Duan, Jin-Long Bei, Xin Li, Shan Gao

PLoS ONE

DOI

2023

The first discovery of Tc1 transposons in yeast

Jia Chang, Guang-You Duan, Wenjing Li, Tung-On Yau, Chang Liu, Jianlin Cui, Huai-Jun Xue, W. Bu, Yan-Ping Hu, Shan Gao

Frontiers in Microbiology

DOI

2023

PacBio full-length transcriptome analysis provides new insights into transcription of chloroplast genomes

Jinsong Shi, Shuang-Yong Yan, Wenjing Li, Xiurong Yang, Zhongqiu Cui, Junling Li, Guang-Sheng Li, Yue-Jiao Li, Yan-Ping Hu, Shan Gao

RNA Biology

DOI

2022

Full-Length Genome of an Ogataea polymorpha Strain CBS4732 ura3Δ Reveals Large Duplicated Segments in Subtelomeric Regions

Jia Chang, Jin-Long Bei, Qi-Miao Shao, Hemu Wang, Huan Fan, Tung-On Yau, W. Bu, J. Ruan, D. Wei, Shan Gao

Frontiers in Microbiology

DOI

2022

Precise annotation of Drosophila mitochondrial genomes leads to insights into AT-rich regions.

Guangcai Liang, Dong Mi, Jia Chang, Tung-On Yau, Guofeng Xu, J. Ruan, Wen-Jun Bu, Shan Gao

Mitochondrion (Amsterdam. Print)

DOI

2022

How the Replication and Transcription Complex Functions in Jumping Transcription of SARS-CoV-2

Jian-Guang Liang, Jinsong Shi, Shunmei Chen, Guang-You Duan, Fan Yang, Zhi Cheng, Xin Li, J. Ruan, Dong Mi, Shan Gao

bioRxiv

DOI

2021

Genomic Feature Analysis of Betacoronavirus Provides Insights Into SARS and COVID-19 Pandemics

Xin Li, Jia Chang, Shunmei Chen, Liangge Wang, Tung-On Yau, Qiang Zhao, Zhangyong Hong, J. Ruan, Guang-You Duan, Shan Gao

Frontiers in Microbiology

DOI

2021

Full-length Genome of the Ogataea polymorpha strain HU-11 reveals large duplicated segments in subtelomeric regions

Jia Chang, Jin-Long Bei, Hemu Wang, Jun Yang, Xin Li, Tung-On Yau, W. Bu, J. Ruan, Guang-You Duan, Shan Gao

DOI

2020

Full-length genome sequence of segmented RNA virus from ticks was obtained using small RNA sequencing data

Xiao-Feng Xu, Jin-Long Bei, Yibo Xuan, Jiayuan Chen, Defu Chen, S. C. Barker, S. Kelava, Xiao-Ai Zhang, Shan Gao, Ze Chen

bioRxiv

DOI

2020

A furin cleavage site was discovered in the S protein of the 2019 novel coronavirus

Xin Li, Guang-You Duan, Wei Zhang, Jinsong Shi, Jiayuan Chen, Shunmei Chen, Shan Gao, J. Ruan

2020

The discovery of a recombinant SARS2-like CoV strain provides insights into SARS and COVID-19 pandemics

Xin Li, Xiufeng Jin, Shunmei Chen, Liangge Wang, Tung-On Yau, Jian-Yi Yang, Zhangyong Hong, J. Ruan, Guang-You Duan, Shan Gao

bioRxiv

DOI

2020

Phylogenies from mitochondrial genomes of 120 species of ticks: Insights into the evolution of the families of ticks and of the genus Amblyomma.

S. Kelava, B. Mans, R. Shao, M. M. Moustafa, K. Matsuno, A. Takano, H. Kawabata, Kozue Sato, H. Fujita, Ze Chen, O. Plantard, S. Hornok, Shan Gao, D. Barker, S. C. Barker, Ryo Nakao

Ticks and Tick-borne Diseases

DOI

2020

Bioinformatics analysis of the 2019 novel coronavirus genome

Jiayuan Chen, Jinsong Shi, Tung-On Yau, Chang Liu, Xin Li, Qiang Zhao, J. Ruan, Shan Gao

DOI

2020

A Negative Feedback Model to Explain Regulation of SARS-CoV-2 Replication and Transcription

Xin Li, Zhi Cheng, Fang Wang, Jia Chang, Qiang Zhao, Hao Zhou, Chang Liu, J. Ruan, Guang-You Duan, Shan Gao

bioRxiv

DOI

2020

Precise annotation of human, chimpanzee, rhesus macaque and mouse mitochondrial genomes leads to insight into mitochondrial transcription in mammals

Xiufeng Jin, Zhi Cheng, Bo Wang, Tung-On Yau, Ze Chen, S. C. Barker, Defu Chen, W. Bu, Da-Qing Sun, Shan Gao

RNA Biology

DOI

2019

铜绿假单胞菌褐藻胶合成抑制剂筛选模型的建立

苏杭，卢昶君，高珊，卜发倩，李德海，于文功，韩峰

《中国海洋药物》

DOI

2019

Precise annotation of human, chimpanzee, rhesus macaque and mouse mitochondrial genomes using 5’ and 3’ end small RNAs

Zhi Cheng, Haishuo Ji, Xiufeng Jin, Bo Wang, Tung-On Yau, Ze Chen, Defu Chen, W. Bu, Da-Qing Sun, Shan Gao

bioRxiv

DOI

2019

Precise annotation of tick mitochondrial genomes reveals multiple copy number variation of short tandem repeats and one transposon-like element

Ze Chen, Yibo Xuan, Guangcai Liang, Xiao-Long Yang, Zhi-Jun Yu, S. C. Barker, S. Kelava, W. Bu, Jing-Ze Liu, Shan Gao

BMC Genomics

DOI

2019

DNA segments of African Swine Fever Virus detected for the first time in hard ticks from sheep and bovines

Ze Chen, Xiao-Feng Xu, Yufeng Wang, Jin-Long Bei, Xiufeng Jin, Wei-hao Dou, Haishuo Ji, Yujie Duan, Xiaojun Yang, Shan Gao

Systematic and Applied Acarology

DOI

2019

Using Pan RNA-Seq Analysis to Reveal the Ubiquitous Existence of 5′ and 3′ End Small RNAs

Xiao-Feng Xu, Haishuo Ji, Xiufeng Jin, Zhi Cheng, Xue Yao, Yanqiang Liu, Qiang Zhao, Zhang Tao, J. Ruan, W. Bu, Ze Chen, Shan Gao

Frontiers in Genetics

DOI

2018

海洋细菌Thalassomonas sp.LD5中的褐藻胶裂解酶TsAly6A和TsAly17A的研究

高珊

《中国海洋大学》

2018

铜绿假单胞菌生物被膜研究进展

高珊，张哲伦，苏杭，韩峰

《中国海洋药物》

2018

铜绿假单胞菌中乙酰化褐藻胶的生物合成和功能研究进展

吴莹，高珊，韩峰

《中国海洋药物》

2018

Using high-resolution annotation of insect mitochondrial DNA to decipher tandem repeats in the control region

Haishuo Ji, Xiao-Feng Xu, Xiufeng Jin, Hong Yin, Jian-Xun Luo, Guang-Yuan Liu, Qiang Zhao, Ze Chen, W. Bu, Shan Gao

bioRxiv

DOI

2018

NormExpression: An R Package to Normalize Gene Expression Data Using Evaluated Methods

Zhen-Feng Wu, Wei-Xiang Liu, Xiufeng Jin, Haishuo Ji, Hua Wang, Gwênlyn Glusman, Max Robinson, Lin Liu, J. Ruan, Shan Gao

bioRxiv

DOI

2018

Data Analysis in Single-Cell Transcriptome Sequencing.

Shan Gao

Methods in molecular biology

DOI

2018

Complemented Palindromic Small RNAs First Discovered from SARS Coronavirus

Chang Liu, Ze Chen, Yue Hu, Haishuo Ji, Deshui Yu, W. Shen, Siyu Li, J. Ruan, W. Bu, Shan Gao

Genes

DOI

2017

Two featured series of rRNA-derived RNA fragments (rRFs) constitute a novel class of small RNAs

Ze Chen, Yu Sun, Xiaojun Yang, Zhen-Feng Wu, Kaifei Guo, Xiaoran Niu, Qing-Song Wang, J. Ruan, W. Bu, Shan Gao

PLoS ONE

DOI

2017

Using Small RNA-seq Data to Detect siRNA Duplexes Induced by Plant Viruses

Xiaoran Niu, Yu Sun, Ze Chen, Ru-Gang Li, C. Padmanabhan, J. Ruan, J. Kreuze, K. Ling, Z. Fei, Shan Gao

Genes

DOI

2016

Two novel lncRNAs discovered in human mitochondrial DNA using PacBio full-length transcriptome data

Shan Gao, Xiao-Xuan Tian, Yu Sun, Zhen-Feng Wu, Zhi Cheng, Peng-Zhi Dong, Qiang Zhao, Bingjun He, J. Ruan, Wen-Jun Bu

bioRxiv

DOI

2016

The Complete Genome of Brucella Suis 019 Provides Insights on Cross-Species Infection

Yuan-Zhi Wang, Zhen Wang, Xin Chen, Hui Zhang, F. Guo, Ke Zhang, Han-Ping Feng, Wenyi Gu, Changxing Wu, Lei Ma, Tian-Sen Li, Chuangfu Chen, Shan Gao

Genes

DOI

2016

PacBio full-length transcriptome profiling of insect mitochondrial gene expression

Shan Gao, Yi-Peng Ren, Yu Sun, Zhen-Feng Wu, J. Ruan, Bingjun He, Tao Zhang, Xin Yu, Xiao-Xuan Tian, W. Bu

RNA Biology

DOI

2016

Full-length transcriptome sequencing on PacBio platform

W. Bu, Guo-Qing Liu, Bingjun He, Shan Gao, Jiaqing Zhang, Zhen-Feng Wu, Yi-Peng Ren, J. Ruan, Yu Sun

DOI

2016

Using Small RNA Deep Sequencing Data to Detect Human Viruses

Fang Wang, Yu Sun, J. Ruan, Rui Chen, Xin Chen, Chengjie Chen, J. Kreuze, Z. Fei, Xiao Zhu, Shan Gao

BioMed Research International

DOI

2015

SRD: A Universal Software Tool for DNA/Protein Sequence Relationship Visualization Based on Undirected Graphs

Ning Zhang, Shan Gao, Guang-You Duan, Yuanming Feng, J. Ruan, Tao Zhang

DOI

2014

Novel Computational Methods and Tools in Biomedicine and Biopharmacy

Yudong Cai, Tao Huang, Lei Chen, Shan Gao, Ning Zhang

Comput. Math. Methods Medicine

DOI

2014

Predicting the Outer/Inner BetaStrands in Protein Beta Sheets Based on the Random Forest Algorithm

Li Tang, Zhengyin Zhao, Lei Zhang, Zhang Tao, Shan Gao

International Conference on Intelligent Computing

DOI

2013

Statistical Analysis of Terminal Extensions of Protein β-Strand Pairs

Ning Zhang, Shan Gao, Lei Zhang, J. Ruan, Zhang Tao

Adv. Bioinformatics

DOI

2013

[Genome-scale sequence data processing and epigenetic analysis of DNA methylation].

Tingzhang Wang, Shan Gao, Jian-Hong Xu, Q. Xue

Yi chuan = Hereditas

DOI

2013

Using Multitask Learning Methods to Investigate Signal Peptides and Signal Anchors.

Ning Zhang, Shan Gao, Lei Chen, J. Ruan

DOI

2012

New insights of protein folding as learned from beta-sheets

Yuanming Feng, Shan Gao, J. Ruan, Ning Zhang, Tao Zhang

DOI

2012

Computational prediction and analysis of protein γ-carboxylation sites based on a random forest method.

Ning Zhang, Bi-Qing Li, Shan Gao, Ji-Shou Ruan, Yu-Dong Cai

Molecular Biosystems

DOI

2012

[Processing and analysis of ChIP-seq data].

Shan Gao, Ning Zhang, Bo Li, Shuo Xu, Yan-Bo Ye, J. Ruan

Yi chuan = Hereditas

DOI

2011

Population dynamics of marine ciliate Euplotes vannus (Protozoa, Ciliophora) in different artificial seawaters

许恒龙，朱明壮，姜勇，高珊，MIN Gi-Sik，AL-RASHEID Khaled A.S.

Journal of Oceanology and Limnology

2010

Reevaluation of cortical developmental patterns in Euplotes(s.l.), including a morphogenetic redescription of E.charon (Protozoa,Ciliophora,Euplotida)

邵晨，马洪钢，高珊，AL-RASHEID A.Khaled，宋微波

Journal of Oceanology and Limnology

2010

[The human variome project and its progress].

Shan Gao, Ning Zhang, Lei Zhang, Guang-You Duan, Zhang Tao

Yi chuan = Hereditas

DOI

2010

De novo assembly of human genomes with massively parallel short read sequencing.

Rui-Qiang Li, Hongmei Zhu, J. Ruan, W. Qian, Xiao-Dong Fang, Zhongbin Shi, Ying-Rui Li, Sheng-Ting Li, Shan Gao, K. Kristiansen, Song-Gang Li, Huan-Ming Yang, Jian Wang, Jun Wang

Genome Research

DOI

2010

Prediction of the parallel/antiparallel orientation of beta-strands using amino acid pairing preferences and support vector machines.

Ning Zhang, Guang-You Duan, Shan Gao, J. Ruan, Zhang Tao

Journal of Theoretical Biology

DOI

2009

Prediction of function changes associated with single‐point protein mutations using support vector machines (SVMs)

Shan Gao, Ning Zhang, Guang-You Duan, Zhuo Yang, Ji-Shou Ruan, Zhang Tao

Human Mutation

DOI

2009

StrandPairsViewer: A Toolkit for Visualization and Analysis of Amino Acids Pairs in Protein Sheet Structures

Ning Zhang, Shan Gao, Guang-You Duan, Zhuo Yang, Zhang Tao

International Conferences on Biomedical and Bioinformatics Engineering

DOI

2009

Component Vector method and Its Application in Detecting Similarities between Sequences

Guang-You Duan, Shan Gao, Ning Zhang, Zhuo Yang, Zhang Tao

International Conferences on Biomedical and Bioinformatics Engineering

DOI

2009

The interstrand amino acid pairs play a significant role in determining the parallel or antiparallel orientation of beta-strands.

Ning Zhang, J. Ruan, Guang-You Duan, Shan Gao, Tao Zhang

Biochemical and Biophysical Research Communications - BBRC

DOI

精选作品

期刊论文

Emergence of crucial evidence catalyzing the origin tracing of SARS-CoV-2

The first discovery of Tc1 transposons in yeast

PacBio full-length transcriptome analysis provides new insights into transcription of chloroplast genomes

Full-Length Genome of an Ogataea polymorpha Strain CBS4732 ura3Δ Reveals Large Duplicated Segments in Subtelomeric Regions

Precise annotation of Drosophila mitochondrial genomes leads to insights into AT-rich regions.

How the Replication and Transcription Complex Functions in Jumping Transcription of SARS-CoV-2

Genomic Feature Analysis of Betacoronavirus Provides Insights Into SARS and COVID-19 Pandemics

Full-length Genome of the Ogataea polymorpha strain HU-11 reveals large duplicated segments in subtelomeric regions

Full-length genome sequence of segmented RNA virus from ticks was obtained using small RNA sequencing data

A furin cleavage site was discovered in the S protein of the 2019 novel coronavirus

The discovery of a recombinant SARS2-like CoV strain provides insights into SARS and COVID-19 pandemics

Phylogenies from mitochondrial genomes of 120 species of ticks: Insights into the evolution of the families of ticks and of the genus Amblyomma.

Bioinformatics analysis of the 2019 novel coronavirus genome

A Negative Feedback Model to Explain Regulation of SARS-CoV-2 Replication and Transcription

Precise annotation of human, chimpanzee, rhesus macaque and mouse mitochondrial genomes leads to insight into mitochondrial transcription in mammals

铜绿假单胞菌褐藻胶合成抑制剂筛选模型的建立

Precise annotation of human, chimpanzee, rhesus macaque and mouse mitochondrial genomes using 5’ and 3’ end small RNAs

Precise annotation of tick mitochondrial genomes reveals multiple copy number variation of short tandem repeats and one transposon-like element

DNA segments of African Swine Fever Virus detected for the first time in hard ticks from sheep and bovines

Using Pan RNA-Seq Analysis to Reveal the Ubiquitous Existence of 5′ and 3′ End Small RNAs

海洋细菌Thalassomonas sp.LD5中的褐藻胶裂解酶TsAly6A和TsAly17A的研究

铜绿假单胞菌生物被膜研究进展

铜绿假单胞菌中乙酰化褐藻胶的生物合成和功能研究进展

Using high-resolution annotation of insect mitochondrial DNA to decipher tandem repeats in the control region

NormExpression: An R Package to Normalize Gene Expression Data Using Evaluated Methods

Data Analysis in Single-Cell Transcriptome Sequencing.

Complemented Palindromic Small RNAs First Discovered from SARS Coronavirus

Two featured series of rRNA-derived RNA fragments (rRFs) constitute a novel class of small RNAs

Using Small RNA-seq Data to Detect siRNA Duplexes Induced by Plant Viruses

Two novel lncRNAs discovered in human mitochondrial DNA using PacBio full-length transcriptome data

The Complete Genome of Brucella Suis 019 Provides Insights on Cross-Species Infection

PacBio full-length transcriptome profiling of insect mitochondrial gene expression

Full-length transcriptome sequencing on PacBio platform

Using Small RNA Deep Sequencing Data to Detect Human Viruses

SRD: A Universal Software Tool for DNA/Protein Sequence Relationship Visualization Based on Undirected Graphs

Novel Computational Methods and Tools in Biomedicine and Biopharmacy

Predicting the Outer/Inner BetaStrands in Protein Beta Sheets Based on the Random Forest Algorithm

Statistical Analysis of Terminal Extensions of Protein β-Strand Pairs

[Genome-scale sequence data processing and epigenetic analysis of DNA methylation].

Using Multitask Learning Methods to Investigate Signal Peptides and Signal Anchors.

New insights of protein folding as learned from beta-sheets

Computational prediction and analysis of protein γ-carboxylation sites based on a random forest method.

[Processing and analysis of ChIP-seq data].

Population dynamics of marine ciliate Euplotes vannus (Protozoa, Ciliophora) in different artificial seawaters

Reevaluation of cortical developmental patterns in Euplotes(s.l.), including a morphogenetic redescription of E.charon (Protozoa,Ciliophora,Euplotida)

[The human variome project and its progress].

De novo assembly of human genomes with massively parallel short read sequencing.

Prediction of the parallel/antiparallel orientation of beta-strands using amino acid pairing preferences and support vector machines.

Prediction of function changes associated with single‐point protein mutations using support vector machines (SVMs)

StrandPairsViewer: A Toolkit for Visualization and Analysis of Amino Acids Pairs in Protein Sheet Structures

Component Vector method and Its Application in Detecting Similarities between Sequences

The interstrand amino acid pairs play a significant role in determining the parallel or antiparallel orientation of beta-strands.