Apr 27, 2021 Pathway and network analysis of more than 2500
F. Abascal, S. Amin, Gary D Bader, P. Bandopadhayay, R. Beroukhim, Johanna Bertl, K. Boroevich, John P. Busanovich, P. Campbell, Calvin Wing Yiu Chan, Ken Chen, J. Choi, J. Deu-Pons, Klev Diamanti, L. Feuerbach, J. Fink, Nuno A. Fonseca, J. Frigola, C. Gambacorti-Passerini, M. Gerstein, Qi Guo, M. P. Hamilton, N. Haradhvala, A. Harmanci, M. Helmy, C. Herrmann, J. Hess, A. Hobolth, Ermin Hodzic, Hong Chen, H. Hornshøj, Keren Isaev, Rory Johnson, Todd A. Johnson, Malene Juul, R. Juul, A. Kahles, Manolis Kellis, Jaegil Kim, J. K. Kim, Youngwook Kim, J. Komorowski, J. Korbel, Sushant Kumar, Andrés Lanzós, Erik Larsson, Shan-Tao Li, Xiaotong Li, Ziao Lin, E. Liu, L. Lochovsky, Shaoke Lou, Tobias Madsen, I. Martincorena, A. Martínez-Fundichely, Y. Maruvka, Patrick D. McGillivray, W. Meyerson, Ferran Muiños, L. Mularoni, H. Nakagawa, M. Nielsen, Keunchil Park, Kiejung Park, T. Pons, I. Reyes-Salazar, E. Rheinbay, C. Rubio-Perez, G. Saksena, L. Salichos, S. Schumacher, M. Shackleton, Ofer Shapira, Ci-Yue Shen, Shi-Min Shuai, L. Sieverling, J. Warrell, Jun-Rui Yu, Jing Zhang, Xuan Zhang, Yan Zhang, Zhongming Zhao, L. Zou
Integra-tivepathway
2020
Integrative pathway enrichment analysis of multivariate omics data
M. Paczkowska, J. Barenboim, N. Sintupisut, Natalie S. Fox, H. Zhu, Diala Abd-Rabbo, M. Mee, P. Boutros, F. Abascal, S. Amin, Gary D Bader, R. Beroukhim, Johanna Bertl, K. Boroevich, S. Brunak, P. Campbell, Joana Carlevaro-Fita, D. Chakravarty, Calvin Wing Yiu Chan, Ken Chen, J. Choi, J. Deu-Pons, P. Dhingra, Klev Diamanti, L. Feuerbach, J. Fink, Nuno A. Fonseca, J. Frigola, C. Gambacorti Passerini, D. Garsed, M. Gerstein, G. Getz, A. González-Pérez, Qian-Yun Guo, I. Gut, David Haan, M. P. Hamilton, N. Haradhvala, A. Harmanci, M. Helmy, C. Herrmann, J. Hess, A. Hobolth, Ermin Hodzic, Hong Chen, H. Hornshøj, Keren Isaev, J. M. Izarzugaza, Rory Johnson, T. Johnson, Malene Juul, R. Juul, A. Kahles, A. Kahraman, Manolis Kellis, E. Khurana, Jihoon Kim, Youngwook Kim, J. Komorowski, J. Korbel, S. Kumar, Andres Lanzos, M. Lawrence, Darlene Lee, K. Lehmann, Si-Liang Li, Xiaotong Li, Z. Lin, E. Liu, L. Lochovsky, Shaoke Lou, Tobias Madsen, K. Marchal, I. Martincorena, A. Martínez-Fundichely, Y. Maruvka, Patrick D. McGillivray, W. Meyerson, Ferran Muiños, L. Mularoni, H. Nakagawa, M. Nielsen, Kiejung Park, J. S. Pedersen, O. Pich, T. Pons, Sergio Pulido-Tamayo, Benjamin J. Raphael, I. Reyes-Salazar, Matthew A. Reyna, E. Rheinbay, M. Rubin, C. Rubio-Perez, R. Sabarinathan, S. Sahinalp, G. Saksena, L. Salichos, C. Sander, S. Schumacher, M. Shackleton, Ofer Shapira, Ci-Yue Shen, Raunak Shrestha, Shi-Min Shuai, Nikos D. Sidiropoulos, L. Sieverling, N. Sinnott-Armstrong, L. Stein, Joshua M. Stuart, D. Tamborero, Grace Tiao, T. Tsunoda, Husen M. Umer, Liis Uusküla-Reimand, Alfonso Valencia, M. Vazquez, L. Verbeke, C. Wadelius, L. Wadi, Jing Wang, J. Warrell, S. Waszak, J. Weischenfeldt, D. Wheeler, Guan-Ming Wu, Jun Yu, Jia-Shan Zhang, Xuanping Zhang, Yan Zhang, Zhongming Zhao, L. Zou, C. von Mering, J. Reimand
Passenger mutations in 2500 cancer genomes: Overall molecular functional impact and consequences
Sushant Kumar, J. Warrell, Shan-Tao Li, Patrick D. McGillivray, W. Meyerson, L. Salichos, A. Harmanci, A. Martínez-Fundichely, Calvin Wing Yiu Chan, M. Nielsen, L. Lochovsky, Yan Zhang, Xiaotong Li, Shaoke Lou, J. S. Pedersen, C. Herrmann, G. Getz, E. Khurana, M. Gerstein
A. Frankish, M. Diekhans, Irwin Jungreis, J. Lagarde, J. Loveland, Jonathan M. Mudge, Cristina Sisu, J. Wright, J. Armstrong, I. Barnes, Andrew E. Berry, A. Bignell, C. Boix, Sílvia Carbonell Sala, F. Cunningham, T. Di Domenico, S. Donaldson, Ian T. Fiddes, C. García Girón, J. Gonzalez, Tiago Grego, Matthew Hardy, Thibaut Hourlier, K. Howe, T. Hunt, Osagie G. Izuogu, Rory Johnson, Fergal J. Martin, Laura Martínez, Shamika Mohanan, Paul Muir, Fábio C. P. Navarro, A. Parker, Bai-Kang Pei, F. Pozo, Ferriol Calvet Riera, M. Ruffier, Bianca M. Schmitt, Eloise Stapleton, M. Suner, Irina Sycheva, Barbara Uszczynska-Ratajczak, Maxim Y. Wolf, Jinuri Xu, Yucheng T. Yang, Andrew D. Yates, D. Zerbino, Yan Zhang, Jyoti Choudhary, M. Gerstein, R. Guigó, T. Hubbard, Manolis Kellis, B. Paten, M. Tress, P. Flicek
GENCODE reference annotation for the human and mouse genomes
A. Frankish, M. Diekhans, Anne-Maud Ferreira, Rory Johnson, Irwin Jungreis, J. Loveland, Jonathan M. Mudge, Cristina Sisu, J. Wright, J. Armstrong, I. Barnes, Andrew E. Berry, A. Bignell, Sílvia Carbonell-Sala, J. Chrast, F. Cunningham, T. Di Domenico, S. Donaldson, Ian T. Fiddes, C. García Girón, J. Gonzalez, Tiago Grego, Matthew Hardy, Thibaut Hourlier, T. Hunt, Osagie G. Izuogu, J. Lagarde, Fergal J. Martin, Laura Martínez, Shamika Mohanan, Paul Muir, Fábio C. P. Navarro, A. Parker, Bai-Kang Pei, F. Pozo, M. Ruffier, Bianca M. Schmitt, Eloise Stapleton, M. Suner, Irina Sycheva, Barbara Uszczynska-Ratajczak, Jinuri Xu, Andrew D. Yates, D. Zerbino, Yan Zhang, B. Aken, Jyoti Choudhary, M. Gerstein, R. Guigó, T. Hubbard, Manolis Kellis, B. Paten, A. Reymond, M. Tress, P. Flicek
Abstract 1279: Passenger mutation landscape in cancer genomes
Sushant Kumar, Jonathan Warrel, Patrick D. McGillivray, W. Meyerson, Shan-Tao Li, L. Salichos, A. Harmanci, Alexander M. Fundichely, Calvin Wing Yiu Chan, C. Herrmann, M. Nielsen, L. Lochovsky, Yan Zhang, Xiaotong Li, E. Khurana, G. Getz, M. Gerstein
An integrated map of structural variation in 2,504 human genomes
P. Sudmant, T. Rausch, E. Gardner, R. Handsaker, A. Abyzov, J. Huddleston, Yan Zhang, Kai Ye, G. Jun, M. H. Fritz, M. Konkel, A. Malhotra, A. Stütz, Xing-Hua Shi, F. Casale, Jie-Ming Chen, F. Hormozdiari, G. Dayama, Ken Chen, M. Malig, M. Chaisson, Klaudia Walter, S. Meiers, S. Kashin, Erik P. Garrison, A. Auton, Hugo Y. K. Lam, X. Mu, C. Alkan, D. Antaki, Taejeong Bae, E. Cerveira, P. Chines, Z. Chong, L. Clarke, E. Dal, L. Ding, S. Emery, Xian Fan, M. Gujral, F. Kahveci, J. Kidd, Yu Kong, Eric-Wubbo Lameijer, Shane A. McCarthy, P. Flicek, R. Gibbs, G. Marth, C. Mason, A. Menelaou, D. Muzny, Bradley J. Nelson, Amina Noor, N. Parrish, M. Pendleton, A. Quitadamo, B. Raeder, E. Schadt, M. Romanovitch, A. Schlattl, R. Sebra, A. Shabalin, A. Untergasser, Jerilyn A. Walker, Min Wang, Fu-Li Yu, Cheng-Sheng Zhang, Jing Zhang, X. Zheng-Bradley, Wan-Ding Zhou, T. Zichner, J. Sebat, M. Batzer, S. Mccarroll, R. Mills, M. Gerstein, A. Bashir, O. Stegle, S. Devine, Charles Lee, E. Eichler, J. Korbel
Taras K. Oleksyk, Adam Gonçalo R. David M. Richard M. Gonçalo R. David R. Auton Abecasis Altshuler Durbin Abecasis Bentley C, Adam Gonçalo R. Auton Abecasis, Adam Auton, G. Abecasis, David M. Richard M. Gonçalo R. David R. Aravinda Andrew Altshuler Durbin Abecasis Bentley Chakravarti Clar, D. Altshuler, R. Durbin, D. Bentley, A. Chakravarti, A. Clark, P. Donnelly, E. Eichler, P. Flicek, S. Gabriel, R. Gibbs, E. Green, M. Hurles, B. Knoppers, J. Korbel, E. Lander, Charles Lee, H. Lehrach, E. Mardis, G. Marth, G. McVean, D. Nickerson, Jeanette P. Schmidt, S. Sherry, Jun Wang, Richard K. Wilson, Richard A. Eric Harsha Yi Viktoriya Christie Sandra Donna Gibbs Boerwinkle Doddapaneni Han Korchina Kovar Le, Richard A. Eric Harsha Yi Viktoriya Christie Sandra Donna Gibbs Boerwinkle Doddapaneni Han Korchina Kovar Le, E. Boerwinkle, H. Doddapaneni, Yi Han, V. Korchina, C. Kovar, Sandra Lee, D. Muzny, J. 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