王扬帆｜中国海洋大学｜学者主页

2026

The first near-complete telomere-to-telomere genome of Atlantic salmon (Salmo salar) provides insights for genetic diversity

Xiaofei Yu, Baojun Zhao, Wentao Han, Yuxiang Liu, Ziyu Wang, Xinghai Zhu, Yangfan Wang, Lingzhao Fang, Shi Wang, Jingjie Hu, Zhenmin Bao

The Innovation Life

DOI

2025

基于卷积神经网络的仿刺参（Apostichopus japonicus）疣足全基因组选择初步研究

林涛，倪萍，包晓凯，李宇泽，韩泠姝，丁君，王扬帆

《海洋通报》

2025

Cardiac transcriptomic analysis of thermal stress and recovery reveals dynamic metabolic regulation in the Zhikong scallop (Chlamys farreri)

Shaoxuan Wu, Danyang Wang, Xiangfu Kong, Xinghai Zhu, Zujing Yang, Lisui Bao, Yangfan Wang, Jingjie Hu, Zhenmin Bao

Aquaculture

DOI

2025

Single-cell transcriptomic dynamics of scallop heart reveals the heterogeneous response to heat stress

Danyang Wang, Na Liu, Xiangfu Kong, Xinghai Zhu, Yangfan Wang, Jingjie Hu, Zhenmin Bao

BMC Biology

DOI

2024

Transcriptome Analysis Reveals the lncRNA-mRNA Co-expression Network Regulating the Aestivation of Sea Cucumber

Xiaomei Chen, Wentao Han, Rui Yang, Xuan Zhu, Shengwen Li, Yangfan Wang, Xue Sun, Yuli Li, Lisui Bao, Lingling Zhang, Shi Wang, Jing Wang

Marine Biotechnology

DOI

2024

Genomic prediction of growth traits in autotetraploid Pacific oyster (Crassostrea gigas) using whole-genome resequencing

Weijun Wang, Xiaokai Bao, Tao Lin, Yuting Meng, Zan Li, Guohua Sun, Yanwei Feng, Xiaohui Xu, Jianmin Yang, Yangfan Wang

Aquaculture

DOI

2024

Deep learning for genomic selection of aquatic animals

Yangfan Wang, Ping Ni, Marc Sturrock, Qifan Zeng, Bó Wáng, Zhenmin Bao, Jingjie Hu

Marine Life Science & Technology

DOI

2024

Advancing selective breeding in leopard coral grouper (P. leopardus) through development of a high-throughput image-based growth trait

Yangfan Wang, Chun Xin, Yurui Gao, Peiyu Li, Mingyi Wang, Shaoxuan Wu, Chaofan Jin, Lingling Zhang, Bo Wang, Zhenmin Bao, Jingjie Hu

Agriculture Communications

DOI

2022

棘皮动物育种数据管理与分析平台的开发及应用

李彬，王卫军，王扬帆，孙国华，徐晓辉，冯艳微，李赞，崔翠菊，杨建敏

《海洋与湖沼》

2022

基于卷积神经网络的仿刺参非侵入式标记方法的初步研究

刘洋，王扬帆，胡景杰，包振民，丁君，常亚青，杨建敏，侯虎

《中国水产科学》

2022

Deciphering the genetic basis and prediction genomic estimated breeding values of heat tolerance in Zhikong scallop Chlamys farreri

Haitao Yu, Mingyi Sui, Zujing Yang, Chang Cui, Xiujiang Hou, Zhi Liu, Xuefeng Wang, Xixi Dong, Ang Zhao, Yangfan Wang, Xiaoting Huang, Jingjie Hu, Zhenmin Bao

Aquaculture

DOI

2022

Development of a high-throughput SNP array for sea cucumber (Apostichopus japonicus) and its application in genomic selection with MCP regularized deep neural networks

Jia Lv, Yangfan Wang, Ping Ni, Ping Lin, Hu Hou, Jun Ding, Yaqing Chang, Jingjie Hu, Shi Wang, Zhenmin Bao

Genomics

DOI

2022

Fine-mapping and association analysis of candidate genes for papilla number in sea cucumber, Apostichopus japonicus

Xinghai Zhu, Ping Ni, Marc Sturrock, Yangfan Wang, Jun Ding, Yaqing Chang, Jingjie Hu, Zhenmin Bao

Marine Life Science & Technology

DOI

2022

Aquaculture Molecular Breeding Platform (AMBP): a comprehensive web server for genotype imputation and genetic analysis in aquaculture

Qifan Zeng, Baojun Zhao, Hao Wang, Mengqiu Wang, Mingxuan Teng, Jingjie Hu, Zhenmin Bao, Yangfan Wang

Nucleic Acids Research

DOI

2021

仿刺参疣足数量SNP遗传力评估

倪萍，任强，王静，丁君，常亚青，王扬帆，胡景杰，包振民

《渔业科学进展》

DOI

2021

Genomic prediction of growth traits in scallops using convolutional neural networks

Xinghai Zhu, Ping Ni, Qiang Xing, Yangfan Wang, Xiaoting Huang, Xiaoli Hu, Jingjie Hu, Xiao‐Lin Wu, Zhenmin Bao

Aquaculture

DOI

2021

Estimating genetic parameters of muscle imaging trait with 2b-RAD SNP markers in Zhikong scallop (Chlamys farreri)

Yangfan Wang, Qiang Ren, Liang Zhao, Moli Li, Xiangfu Kong, Yiqiang Xu, Xiaoli Hu, Jingjie Hu, Zhenmin Bao

Aquaculture

DOI

2021

Variance Component Decomposition for Growth Traits of the Bay Scallop (Argopecten irradians irradians)

Hengde Li, Yangfan Wang, Qiang Xing, Qifan Zeng, Liang Zhao, Yaqun Zhang, Xiaoli Hu, Zhenmin Bao

Frontiers in Marine Science

DOI

2020

A Causality Perspective of Genomic Breed Composition for Composite Animals

Xiao‐Lin Wu, Zhi Li, Yangfan Wang, Jun He, Guilherme J. M. Rosa, Ryan Ferretti, John Genho, Richard G. Tait, Jamie T. Parham, Tom Schultz, Stewart W Bauck

Frontiers in Genetics

DOI

2020

Estimation of Genomic Breed Composition for Purebred and Crossbred Animals Using Sparsely Regularized Admixture Models

Yangfan Wang, Xiao‐Lin Wu, Zhi Li, Zhenmin Bao, Richard G. Tait, Stewart W Bauck, Guilherme J. M. Rosa

Frontiers in Genetics

DOI

2018

Predicting Growth Traits with Genomic Selection Methods in Zhikong Scallop (Chlamys farreri)

Yangfan Wang, Guidong Sun, Qifan Zeng, Zhihui Chen, Xiaoli Hu, Hengde Li, Shi Wang, Zhenmin Bao

Marine Biotechnology

DOI

2018

Estimating realized heritability for growth in Zhikong scallop (Chlamys farreri) using genome-wide complex trait analysis

Haobing Guo, Qifan Zeng, Yangping Li, Yangfan Wang, Zhihui Chen, Ping Lin, Shi Wang, Zhenmin Bao

Aquaculture

DOI

2018

Technical note: an R package for fitting sparse neural networks with application in animal breeding1

Yangfan Wang, Xue Mi, Guilherme J. M. Rosa, Zhihui Chen, Ping Lin, Shi Wang, Zhenmin Bao

Journal of Animal Science

DOI

2018

A Population Genetic Analysis of Continuously Selected Chlamys farreri Populations

Lu Zhang, Yuli Li, Yangping Li, Yangping Li, Yangping Li, Zhihui Yang, Yuqiang Li, Yuqiang Li, Yangfan Wang, Shi Wang, Zhenmin Bao

Journal of Ocean University of China

DOI

2018

Sea cucumber genome provides insights into saponin biosynthesis and aestivation regulation

Yuli Li, Ruijia Wang, Xiaogang Xun, Jing Wang, Lisui Bao, Ramesha B. Thimmappa, Jun Ding, Jingwei Jiang, Liheng Zhang, Tianqi Li, Jia Lv, Chuang Mu, Xiaoli Hu, Lingling Zhang, Jing Liu, Yuqiang Li, Lijie Yao, Wenqian Jiao, Yangfan Wang, Shanshan Lian, Zelong Zhao, Yaoyao Zhan, Xiaoting Huang, Huan Liao, Jia Wang, Hongzhen Sun, Xue Mi, Yu Xia, Qiang Xing, Wei Lu, Anne Osbourn, Zunchun Zhou, Yaqing Chang, Zhenmin Bao, Shi Wang

Cell Discovery

DOI

2017

Scallop genome provides insights into evolution of bilaterian karyotype and development

Shi Wang, Jinbo Zhang, Wenqian Jiao, Ji Li, Xiaogang Xun, Yan Sun, Ximing Guo, Pin Huan, Bo Dong, Lingling Zhang, Xiaoli Hu, Xiaoqing Sun, Jing Wang, Chengtian Zhao, Yangfan Wang, Dawei Wang, Xiaoting Huang, Ruijia Wang, Jia Lv, Yuli Li, Zhifeng Zhang, Baozhong Liu, Wei Lu, Yuanyuan Hui, Jun Liang, Zunchun Zhou, Rui Hou, Xue Li, Yunchao Liu, Hengde Li, Xianhui Ning, Yu Lin, Liang Zhao, Qiang Xing, Jinzhuang Dou, Yangping Li, Junxia Mao, Haobing Guo, Huaiqian Dou, Tianqi Li, Chuang Mu, Wenkai Jiang, Qiang Fu, Xiaoteng Fu, Yan Miao, Jian Liu, Qian Yu, Ruojiao Li, Huan Liao, Xuan Li, Yifan Kong, Zhi Jiang, Daniel Chourrout, Ruiqiang Li, Zhenmin Bao

Nature Ecology & Evolution，Vol. 10, No. 50

DOI

2017

Scallop genome reveals molecular adaptations to semi-sessile life and neurotoxins

Yuli Li, Xiaoqing Sun, Xiaoli Hu, Xiaogang Xun, Jinbo Zhang, Ximing Guo, Wenqian Jiao, Lingling Zhang, Weizhi Liu, Jing Wang, Ji Li, Yan Sun, Yan Miao, Xiaokang Zhang, Taoran Cheng, Guoliang Xu, Xiaoteng Fu, Yangfan Wang, Xinran Yu, Xiaoting Huang, Wei Lü, Jia Lv, Chuang Mu, Dawei Wang, Li Xu, Yu Xia, Yajuan Li, Zhihui Yang, Fengliang Wang, Lu Zhang, Qiang Xing, Huaiqian Dou, Xianhui Ning, Jinzhuang Dou, Yangping Li, Dexu Kong, Yaran Liu, Zhi Dong Jiang, Ruiqiang Li, Shi Wang, Zhenmin Bao

Nature Communications

DOI

2017

Performance comparison of two efficient genomic selection methods (gsbay & MixP) applied in aquacultural organisms

Hailin Su, Hengde Li, Wang Shi, Yangfan Wang, Zhenmin Bao

Journal of Ocean University of China

DOI

2016

贝类全基因组遗传育种评估与分析系统的开发

苏海林，王扬帆，胡晓丽，王师，包振民

《中国海洋大学学报(自然科学版)》

2016

Evaluation of the 2b-RAD method for genomic selection in scallop breeding

Jinzhuang Dou, Xue Li, Qiang Fu, Wenqian Jiao, Yangping Li, Tianqi Li, Yangfan Wang, Xiaoli Hu, Shi Wang, Zhenmin Bao

Scientific Reports

DOI

2015

Identification of SNPs with different allele frequencies in China and Japan population of Pacific abalone (Haliotis discus hannai)

Qian Yu, Yangping Li, Qiang Xing, Linhua Hao, Xue Li, Meiwei Zhang, Yangfan Wang, Xiaoli Hu, Zhenmin Bao

Conservation Genetics Resources

DOI

2015

Construction of a High-Density Genetic Map and Quantitative Trait Locus Mapping in the Sea Cucumber Apostichopus japonicus

Meilin Tian, Yangping Li, Jing Jing, Chuang Mu, Huixia Du, Jinzhuang Dou, Junxia Mao, Xue Li, Wenqian Jiao, Yangfan Wang, Xiaoli Hu, Shi Wang, Ruijia Wang, Zhenmin Bao

Scientific Reports

DOI

2015

Forty-nine SNP markers developed from the genome dataset of Pacific abalone (Haliotis discus hannai) and their application in population genetic analysis

Qian Yu, Yangping Li, Qiang Xing, Xue Li, Liang Zhao, Yangfan Wang, Xiaoli Hu, Zhenmin Bao

Conservation Genetics Resources

DOI

精选作品

期刊论文

The first near-complete telomere-to-telomere genome of Atlantic salmon (Salmo salar) provides insights for genetic diversity

基于卷积神经网络的仿刺参（Apostichopus japonicus）疣足全基因组选择初步研究

Cardiac transcriptomic analysis of thermal stress and recovery reveals dynamic metabolic regulation in the Zhikong scallop (Chlamys farreri)

Single-cell transcriptomic dynamics of scallop heart reveals the heterogeneous response to heat stress

Transcriptome Analysis Reveals the lncRNA-mRNA Co-expression Network Regulating the Aestivation of Sea Cucumber

Genomic prediction of growth traits in autotetraploid Pacific oyster (Crassostrea gigas) using whole-genome resequencing

Deep learning for genomic selection of aquatic animals

Advancing selective breeding in leopard coral grouper (P. leopardus) through development of a high-throughput image-based growth trait

棘皮动物育种数据管理与分析平台的开发及应用

基于卷积神经网络的仿刺参非侵入式标记方法的初步研究

Deciphering the genetic basis and prediction genomic estimated breeding values of heat tolerance in Zhikong scallop Chlamys farreri

Development of a high-throughput SNP array for sea cucumber (Apostichopus japonicus) and its application in genomic selection with MCP regularized deep neural networks

Fine-mapping and association analysis of candidate genes for papilla number in sea cucumber, Apostichopus japonicus

Aquaculture Molecular Breeding Platform (AMBP): a comprehensive web server for genotype imputation and genetic analysis in aquaculture

仿刺参疣足数量SNP遗传力评估

Genomic prediction of growth traits in scallops using convolutional neural networks

Estimating genetic parameters of muscle imaging trait with 2b-RAD SNP markers in Zhikong scallop (Chlamys farreri)

Variance Component Decomposition for Growth Traits of the Bay Scallop (Argopecten irradians irradians)

A Causality Perspective of Genomic Breed Composition for Composite Animals

Estimation of Genomic Breed Composition for Purebred and Crossbred Animals Using Sparsely Regularized Admixture Models

Predicting Growth Traits with Genomic Selection Methods in Zhikong Scallop (Chlamys farreri)

Estimating realized heritability for growth in Zhikong scallop (Chlamys farreri) using genome-wide complex trait analysis

Technical note: an R package for fitting sparse neural networks with application in animal breeding1

A Population Genetic Analysis of Continuously Selected Chlamys farreri Populations

Sea cucumber genome provides insights into saponin biosynthesis and aestivation regulation

Scallop genome provides insights into evolution of bilaterian karyotype and development

Scallop genome reveals molecular adaptations to semi-sessile life and neurotoxins

Performance comparison of two efficient genomic selection methods (gsbay & MixP) applied in aquacultural organisms

贝类全基因组遗传育种评估与分析系统的开发

Evaluation of the 2b-RAD method for genomic selection in scallop breeding

Identification of SNPs with different allele frequencies in China and Japan population of Pacific abalone (Haliotis discus hannai)

Construction of a High-Density Genetic Map and Quantitative Trait Locus Mapping in the Sea Cucumber Apostichopus japonicus

Forty-nine SNP markers developed from the genome dataset of Pacific abalone (Haliotis discus hannai) and their application in population genetic analysis

会议论文

基于图像纹理分析的虾夷扇贝贝壳纹路特征提取

书籍章节

Genomic selection

研究方向