洪旎｜上海海洋大学｜学者主页

2026

Establishment and Characterization of a Spermatogonial Stem Cell-like Line with Potential for Meiotic Differentiation in the Endangered Fish Rhinogobio nasutus

Yue Wang, Yanbin Liu, Muhammad Jawad, Haijing Xu, Qinjun Wu, Lang Gui, Ni Hong, Zongqiang Lian, Mingyou Li

Biology

DOI

2024

scMMO-atlas: a single cell multimodal omics atlas and portal for exploring fine cell heterogeneity and cell dynamics

Wen-Wen Cheng, Changhui Yin, Shiya Yu, Xi Chen, Ni Hong, Wenfei Jin

Nucleic Acids Research

DOI

2024

Sirpα on tumor-associated myeloid cells restrains antitumor immunity in colorectal cancer independent of its interaction with CD47

Chunliu Huang, Xuefei Wang, Ying-Zhao Wang, Yongyi Feng, Xiu-Mei Wang, Shan-Shan Chen, Peidong Yan, Jing Liao, Qi Zhang, Chengzhou Mao, Yang Li, Lixiang Wang, Xin-Yu Wang, Wei Yi, Wei-bin Cai, Shou-Deng Chen, Ni Hong, Weiling He, Jun Chen, Wenfei Jin

Nature Cancer

DOI

2024

Protocol for mapping T cell activation using single-cell RNA-seq

Hui Li, Yi-Fei Liu, Xuefei Wang, Shiya Yu, Junliang Wang, Yue Hu, Ni Hong, Wenfei Jin

STAR Protocols

DOI

2024

The chromatin accessibility dynamics during cell fate specifications in zebrafish early embryogenesis

Qiushi Xu, Yunlong Zhang, Wei Xu, Dong Liu, Wenfei Jin, Xi Chen, Ni Hong

bioRxiv

DOI

2024

Single-cell transcriptomic analysis of chondrocytes in cartilage and pathogenesis of osteoarthritis

Chang-Fen Huang, Bin Zeng, Bo Zhou, Guan-Ming Chen, Qi Zhang, W. Hou, Guozhi Xiao, Li Duan, Ni Hong, Wenfei Jin

Genes and Diseases

DOI

2023

Differentiation and migration of hematopoietic stem and progenitor cells cross multiple tissues

Shiya Yu, Hui Li, Xuefei Wang, Guan-Ming Chen, Hongwen Huang, Ni Hong, You-Qiang Song, Xuegong Zhang, Wenfei Jin

bioRxiv

DOI

2023

Anti-PD-1 therapy achieves favorable outcomes in HBV-positive non-liver cancer

Jie Zhou, Guan-Ming Chen, Jiuling Wang, Bo Zhou, Xuemin Sun, Jinsong Wang, Shuk-Kuen Tang, X. Xing, Xiao-Fei Hu, Yang Zhao, Yu Peng, Wenjiong Shi, Ting Zhao, Yu-Zhang Wu, Han-Bing Zhong, Ni Hong, Zhihua Ruan, Yi Zhang, Wenfei Jin

Oncogenesis

DOI

2023

Single cell analyses of cancer cells identified two regulatorily and functionally distinct categories in differentially expressed genes among tumor subclones

Wei Cao, Xuefei Wang, Kaiwen Luo, Yang Li, Jiahong Sun, R. Fu, Qi Zhang, Ni Hong, E. Cheung, Wenfei Jin

bioRxiv

DOI

2023

Exploring the dynamics and influencing factors of CD4 T cell activation using single-cell RNA-seq

Hui Li, Hong-Yi Liu, Yi-Fei Liu, Xuefei Wang, Shi-Ya Yu, Hongwen Huang, Xiang-Ling Shen, Qi Zhang, Ni Hong, Wenfei Jin

iScience

DOI

2023

Progress in single-cell multimodal sequencing and multi-omics data integration

Xuefei Wang, Xin-Chao Wu, Ni Hong, Wenfei Jin

Biophysical Reviews

DOI

2022

ISSAAC-seq enables sensitive and flexible multimodal profiling of chromatin accessibility and gene expression in single cells

Wei Xu, Wei-Long Yang, Yunlong Zhang, Yawen Chen, Ni Hong, Qian Zhang, Xuefei Wang, Yu-Kun Hu, Kun Song, Wenfei Jin, Xi Chen

bioRxiv

DOI

2021

A Comprehensive Characterization of Monoallelic Expression During Hematopoiesis and Leukemogenesis via Single-Cell RNA-Sequencing

Rui-Qing Fu, Peng-Fei Qin, Xianghui Zou, Zhang-Li Hu, Ni Hong, Yun Wang, Wenfei Jin

Frontiers in Cell and Developmental Biology

DOI

2021

Mesenchymal stem cell subpopulations and their heterogeneity of response to inductions revealed by single-cell RNA-seq

W. Hou, Lijuan Duan, Changyuan Huang, Xing-Fu Li, Xiao Xu, Peng-Fei Qin, Ni Hong, Da-Ping Wang, Wenfei Jin

bioRxiv

DOI

2021

Integrated decoding hematopoiesis and leukemogenesis using single-cell sequencing and its medical implication

Peng-Fei Qin, Y. Pang, W. Hou, Rui-Qing Fu, Yingchi Zhang, Xuefei Wang, Guo-Feng Meng, Qifa Liu, Xiao-Fan Zhu, Ni Hong, T. Cheng, Wenfei Jin

Cell Discovery

DOI

2021

Cross-Tissue Characterization of Heterogeneities of Mesenchymal Stem Cells and Their Differentiation Potentials

W. Hou, L. Duan, Changyuan Huang, Xing-Fu Li, Xiao Xu, Peng-Fei Qin, Ni Hong, Da-Ping Wang, Wenfei Jin

Frontiers in Cell and Developmental Biology

DOI

2021

Reinvestigation of Classic T Cell Subsets and Identification of Novel Cell Subpopulations by Single-Cell RNA Sequencing

Xuefei Wang, Xiang-Ling Shen, Shan Chen, Hong-Yi Liu, Ni Hong, Han-Bing Zhong, Xi Chen, Wenfei Jin

Journal of Immunology

DOI

2021

Comprehensive mapping of alternative polyadenylation site usage and its dynamics at single-cell resolution

Jun-Liang Wang, Wei Chen, Wen-Jun Yue, W. Hou, Feng Rao, Han-Bing Zhong, Yuan-Ming Qi, Ni Hong, Ting Ni, Wenfei Jin

bioRxiv

DOI

2020

Diploid genome architecture revealed by multi-omic data of hybrid mice

Zhi-Jun Han, Kai-Rong Cui, Katarzyna Placek, Ni Hong, Chengqi Lin, Wei Chen, Ke-Ji Zhao, Wenfei Jin

Genome Research

DOI

2020

Reclassification of classic T cell subsets and identification of novel cell types by single-cell RNA sequencing

Xiang-Ling Shen, Xuefei Wang, Shan Chen, Hong-Yi Liu, Ni Hong, Wenfei Jin

DOI

2019

Exploring the changing landscape of cell-to-cell variation after CTCF knockdown via single cell RNA-seq

Wei Wang, Gang Ren, Ni Hong, Wenfei Jin

BMC Genomics

DOI

2019

Principles of 3D Nucleus Organization and Epigenetic Regulation in Diploid Genome Revealed by Multi-omic Data from Hybrid Mouse

Zhi-Jun Han, Kai-Rong Cui, Katarzyna Placek, Ni Hong, Chengqi Lin, Wei Chen, Ke-Ji Zhao, Wenfei Jin

DOI

2011

Germ cell sex prior to meiosis in the rainbow trout

Mingyou Li, Qian Shen, Foong Mei Wong, Hongyan Xu, Ni Hong, Lingbing Zeng, Lin Liu, Qiwei Wei, Yunhan Hong

Protein & Cell

2010

青鳉干细胞及其应用

易梅生，洪旎，李振东，严彦，王丹科，赵浩斌，洪云汉

《中国科学:生命科学》

洪旎

精选作品

期刊论文

Establishment and Characterization of a Spermatogonial Stem Cell-like Line with Potential for Meiotic Differentiation in the Endangered Fish Rhinogobio nasutus

scMMO-atlas: a single cell multimodal omics atlas and portal for exploring fine cell heterogeneity and cell dynamics

Sirpα on tumor-associated myeloid cells restrains antitumor immunity in colorectal cancer independent of its interaction with CD47

Protocol for mapping T cell activation using single-cell RNA-seq

The chromatin accessibility dynamics during cell fate specifications in zebrafish early embryogenesis

Single-cell transcriptomic analysis of chondrocytes in cartilage and pathogenesis of osteoarthritis

Differentiation and migration of hematopoietic stem and progenitor cells cross multiple tissues

Anti-PD-1 therapy achieves favorable outcomes in HBV-positive non-liver cancer

Single cell analyses of cancer cells identified two regulatorily and functionally distinct categories in differentially expressed genes among tumor subclones

Exploring the dynamics and influencing factors of CD4 T cell activation using single-cell RNA-seq

Progress in single-cell multimodal sequencing and multi-omics data integration

ISSAAC-seq enables sensitive and flexible multimodal profiling of chromatin accessibility and gene expression in single cells

A Comprehensive Characterization of Monoallelic Expression During Hematopoiesis and Leukemogenesis via Single-Cell RNA-Sequencing

Mesenchymal stem cell subpopulations and their heterogeneity of response to inductions revealed by single-cell RNA-seq

Integrated decoding hematopoiesis and leukemogenesis using single-cell sequencing and its medical implication

Cross-Tissue Characterization of Heterogeneities of Mesenchymal Stem Cells and Their Differentiation Potentials

Reinvestigation of Classic T Cell Subsets and Identification of Novel Cell Subpopulations by Single-Cell RNA Sequencing

Comprehensive mapping of alternative polyadenylation site usage and its dynamics at single-cell resolution

Diploid genome architecture revealed by multi-omic data of hybrid mice

Reclassification of classic T cell subsets and identification of novel cell types by single-cell RNA sequencing

Exploring the changing landscape of cell-to-cell variation after CTCF knockdown via single cell RNA-seq

Principles of 3D Nucleus Organization and Epigenetic Regulation in Diploid Genome Revealed by Multi-omic Data from Hybrid Mouse

Germ cell sex prior to meiosis in the rainbow trout

青鳉干细胞及其应用

会议论文

青鳉鱼(Oryzias Latipes)中pax6基因复制后的分歧

研究方向